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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007224 ID=TCONS_00007224|Name=TCONS_00007224|organism=Clytia hemisphaerica|type=transcript|length=1016bp
ATTCTGATCATAAAAATGTGTATGTGATTTACTTTTGCAATTCACCCAAT
CATTTAGGAAATATTAAAGAAATATGGAATTTTACAAGGATTACAAAGAG
GCATGTCAATCTGGCAAGACAGAAGAACTTTATGAGAAGCACGCAATGGA
CTATGATGAGAGCGTTGATAAATATGGGTGGTCTTGCATCAATGAGTACT
GTGCTAATCTTTTGAGTCACTATTTGACGGGCAAAGATAACGGTGCCCAG
TCAATTAGGATTGATGAAAACGAGGCTGTTTTAGATCTTGGTTGTGGTAC
TGGAATATCGGGaatgtttttacaaaaatcgggGTTTCAGAATATAATCG
GAATAGATGGATCGCAGGAAATGATTGAACAAGCTCAATCCAAAAATTTG
TATAATAAACTATACAAAGGAAAACTcgctgaaaatgaagatttcagTAG
TTTAATTGAAGATAGTTTTTTCCGTTCTATTTTATGTGTAGGCTGTATAA
GTGTTGGGCATATCCGGATCACCGAATATCTACCGGAAATATCACGGATT
TTGAAAGATGGTGGGATAGCTGTGTACACAGTTAGCTCAACACTAAACCA
TTTACAAGTGTTGAAAGAACATGTCAATTACTTGGATACAGCTGAAAATT
CAAATCTGGAATTATTGAGAATAGAAcgtaaattttatttcaaatcacCC
GACGGAATTGTCAATCATTGTTATGTCTATGtagtaaagaaaatttcaaa
cttttagaaAAGAATTAAAAGACAATCTATGATATTTATGCAACATAAAT
atgtaattttcaaattttcaataattttgattatctaaaataatatgtaa
tacaatttttagcaaaacttgaaaaattaattattgtTTTCAACAGaact
aaatttttgaaaccgTAGGGCGGGGCGGGGATGTGTACTTTGGCTATTGG
TGGTTATTGGCATGTGCCACACCATTAAGACCACCTTTTTTGGACATTCA
AAACTCCACTAAGGGT Run BLAST on NCBI protein sequence of TCONS_00007224-protein >TCONS_00007224-protein ID=TCONS_00007224-protein|Name=TCONS_00007224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MEFYKDYKEACQSGKTEELYEKHAMDYDESVDKYGWSCINEYCANLLSHY
LTGKDNGAQSIRIDENEAVLDLGCGTGISGMFLQKSGFQNIIGIDGSQEM
IEQAQSKNLYNKLYKGKLAENEDFSSLIEDSFFRSILCVGCISVGHIRIT
EYLPEISRILKDGGIAVYTVSSTLNHLQVLKEHVNYLDTAENSNLELLRI
ERKFYFKSPDGIVNHCYVYVVKKISNF Run BLAST on NCBI transcript from alignment at sc0000074:360048..361063 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007224 ID=TCONS_00007224|Name=TCONS_00007224|organism=Clytia hemisphaerica|type=transcript|length=1016bp|location=Sequence derived from alignment at sc0000074:360048..361063 (Clytia hemisphaerica)
ACCCTTAGTGGAGTTTTGAATGTCCAAAAAAGGTGGTCTTAATGGTGTGG
CACATGCCAATAACCACCAATAGCCAAAGTACACATCCCCGCCCCGCCCT
AcggtttcaaaaatttagttCTGTTGAAAacaataattaatttttcaagt
tttgctaaaaattgtattacatattattttagataatcaaaattattgaa
aatttgaaaattacatATTTATGTTGCATAAATATCATAGATTGTCTTTT
AATTCTTttctaaaagtttgaaattttctttactaCATAGACATAACAAT
GATTGACAATTCCGTCGGgtgatttgaaataaaatttacgTTCTATTCTC
AATAATTCCAGATTTGAATTTTCAGCTGTATCCAAGTAATTGACATGTTC
TTTCAACACTTGTAAATGGTTTAGTGTTGAGCTAACTGTGTACACAGCTA
TCCCACCATCTTTCAAAATCCGTGATATTTCCGGTAGATATTCGGTGATC
CGGATATGCCCAACACTTATACAGCCTACACATAAAATAGAACGGAAAAA
ACTATCTTCAATTAAACTActgaaatcttcattttcagcgAGTTTTCCTT
TGTATAGTTTATTATACAAATTTTTGGATTGAGCTTGTTCAATCATTTCC
TGCGATCCATCTATTCCGATTATATTCTGAAACcccgatttttgtaaaaa
cattCCCGATATTCCAGTACCACAACCAAGATCTAAAACAGCCTCGTTTT
CATCAATCCTAATTGACTGGGCACCGTTATCTTTGCCCGTCAAATAGTGA
CTCAAAAGATTAGCACAGTACTCATTGATGCAAGACCACCCATATTTATC
AACGCTCTCATCATAGTCCATTGCGTGCTTCTCATAAAGTTCTTCTGTCT
TGCCAGATTGACATGCCTCTTTGTAATCCTTGTAAAATTCCATATTTCTT
TAATATTTCCTAAATGATTGGGTGAATTGCAAAAGTAAATCACATACACA
TTTTTATGATCAGAAT Coding sequence (CDS) from alignment at sc0000074:360048..361063 >TCONS_00007224 ID=TCONS_00007224|Name=TCONS_00007224|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000074:360048..361063 (Clytia hemisphaerica)
ctaaaagtttgaaattttctttactaCATAGACATAACAATGATTGACAA
TTCCGTCGGgtgatttgaaataaaatttacgTTCTATTCTCAATAATTCC
AGATTTGAATTTTCAGCTGTATCCAAGTAATTGACATGTTCTTTCAACAC
TTGTAAATGGTTTAGTGTTGAGCTAACTGTGTACACAGCTATCCCACCAT
CTTTCAAAATCCGTGATATTTCCGGTAGATATTCGGTGATCCGGATATGC
CCAACACTTATACAGCCTACACATAAAATAGAACGGAAAAAACTATCTTC
AATTAAACTActgaaatcttcattttcagcgAGTTTTCCTTTGTATAGTT
TATTATACAAATTTTTGGATTGAGCTTGTTCAATCATTTCCTGCGATCCA
TCTATTCCGATTATATTCTGAAACcccgatttttgtaaaaacattCCCGA
TATTCCAGTACCACAACCAAGATCTAAAACAGCCTCGTTTTCATCAATCC
TAATTGACTGGGCACCGTTATCTTTGCCCGTCAAATAGTGACTCAAAAGA
TTAGCACAGTACTCATTGATGCAAGACCACCCATATTTATCAACGCTCTC
ATCATAGTCCATTGCGTGCTTCTCATAAAGTTCTTCTGTCTTGCCAGATT
GACATGCCTCTTTGTAATCCTTGTAAAATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007224-exon-sc0000074-1491911889:360048..361063 | TCONS_00007224-exon-sc0000074-1491911889:360048..361063 | Clytia hemisphaerica | exon |
| TCONS_00007224-exon-sc0000074-1510915933:360048..361063 | TCONS_00007224-exon-sc0000074-1510915933:360048..361063 | Clytia hemisphaerica | exon |
| TCONS_00007224-exon-sc0000074-1575043694:360048..361063 | TCONS_00007224-exon-sc0000074-1575043694:360048..361063 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:360048..361063 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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