TCONS_00007213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007213
Unique NameTCONS_00007213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007213 ID=TCONS_00007213|Name=TCONS_00007213|organism=Clytia hemisphaerica|type=transcript|length=359bp
gaaaaaatggcgaatttcatcattgcattgccTTTCATCCTTTTCATAAG
CTTTTCAACTTGTGACACAAAAACCATATCatcaaatgtgaaaaaagaTC
TGGACAGAAATACAAGGTGTGTTACAATAGCATTCGTAACATGTCATGgc
caaaaatctttgaaagatTTCTTCAAATGTTCACGAAAAGTGTTAAGCGA
ATGCCGTGAAGTAACACCACAAGGAGATGGAGGAAGCTTGTCAACTTGCG
ACACCGAAGATGTTCGTGATACAGCAAGAATGTGTTTTGATGAAATACAT
TGCCAGGATATTGATTTCACTTATCTCAAATGCAAGATCAAAACGAACGG
AAAAAGACA
Run BLAST on NCBI

protein sequence of TCONS_00007213-protein

>TCONS_00007213-protein ID=TCONS_00007213-protein|Name=TCONS_00007213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
EKMANFIIALPFILFISFSTCDTKTISSNVKKDLDRNTRCVTIAFVTCHG
QKSLKDFFKCSRKVLSECREVTPQGDGGSLSTCDTEDVRDTARMCFDEIH
CQDIDFTYLKCKIKTNGKR
Run BLAST on NCBI

transcript from alignment at sc0000074:14518..14876

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007213 ID=TCONS_00007213|Name=TCONS_00007213|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at sc0000074:14518..14876 (Clytia hemisphaerica)
TGTCTTTTTCCGTTCGTTTTGATCTTGCATTTGAGATAAGTGAAATCAAT
ATCCTGGCAATGTATTTCATCAAAACACATTCTTGCTGTATCACGAACAT
CTTCGGTGTCGCAAGTTGACAAGCTTCCTCCATCTCCTTGTGGTGTTACT
TCACGGCATTCGCTTAACACTTTTCGTGAACATTTGAAGAAatctttcaa
agatttttggcCATGACATGTTACGAATGCTATTGTAACACACCTTGTAT
TTCTGTCCAGAtcttttttcacatttgatGATATGGTTTTTGTGTCACAA
GTTGAAAAGCTTATGAAAAGGATGAAAggcaatgcaatgatgaaattcgc
cattttttc

Coding sequence (CDS) from alignment at sc0000074:14518..14876

>TCONS_00007213 ID=TCONS_00007213|Name=TCONS_00007213|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000074:14518..14876 (Clytia hemisphaerica)
TCTTTTTCCGTTCGTTTTGATCTTGCATTTGAGATAAGTGAAATCAATAT
CCTGGCAATGTATTTCATCAAAACACATTCTTGCTGTATCACGAACATCT
TCGGTGTCGCAAGTTGACAAGCTTCCTCCATCTCCTTGTGGTGTTACTTC
ACGGCATTCGCTTAACACTTTTCGTGAACATTTGAAGAAatctttcaaag
atttttggcCATGACATGTTACGAATGCTATTGTAACACACCTTGTATTT
CTGTCCAGAtcttttttcacatttgatGATATGGTTTTTGTGTCACAAGT
TGAAAAGCTTATGAAAAGGATGAAAggcaatgcaatgatgaaattcgcca
ttttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004044XLOC_004044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007213-exon-sc0000074-1491911889:14518..14876TCONS_00007213-exon-sc0000074-1491911889:14518..14876Clytia hemisphaericaexon
TCONS_00007213-exon-sc0000074-1510915933:14518..14876TCONS_00007213-exon-sc0000074-1510915933:14518..14876Clytia hemisphaericaexon
TCONS_00007213-exon-sc0000074-1575043694:14518..14876TCONS_00007213-exon-sc0000074-1575043694:14518..14876Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007213-proteinTCONS_00007213-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:14518..14876 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.157301	0	0	0	0.887767	0.363973	0.251424	2.63097	0.457358	0	0	0.246548	0.253939	0.226635	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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