TCONS_00007209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007209
Unique NameTCONS_00007209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007209 ID=TCONS_00007209|Name=TCONS_00007209|organism=Clytia hemisphaerica|type=transcript|length=1874bp
catgtacacatgtgttgttATTCAAGAGCTGATAAAAATGAATGTCATCT
TGAGACAGAGATTAagacatttgaaaaattctaaCACAACTACAGCTGGC
TATTGGTTAAGATGTATGTCAACACTAGAAACCATTGAATTAAATGGACG
CAATTACAAGAAAGATCACATGACCAATGTCCCTCAAAATATTATCAGCA
GACTCAATAAACAATTACACAACACAAAGGATCACCCATTAGAGATTGTA
AAATCAAAGATAGTGGATTATTTTCATGGATACTTTCGTAACCGTCATGG
TGGATGTGTTTTTGCCTCTATAGACAATATCAGCCCTGTTGTAACTGTAC
AACAGAATTTTGACAATTTGTTAGTACCAAAAGACCATGTGAGCCGTAGT
AAAAATGACAATTATTATATCAATGATCTTCAGATGTTGAGAGCTCACAC
TACAGCCCATGAAATTGATTTAATAAGCAGTGGTTGGAATGCTTTCTTGA
ACACTGGGGATTGTTACAGAAGAGATGCAATTGATAAGAGTCATTTCCCA
GTTTTCCATCAGTTAGAAGGTGTACGTATCTTTGATGACTTCGAACTGTT
CGAGGAAACAAAGGATAATTCCTTACGTATTTTGGAGAAAACTGCATCAA
TGAGGacagaagaaaaacaagcagaACACACGATAGATGCTGCACGAATC
ACAGAGTTTAATTTAAAATATACTCTAATGAAACTTGTGGAAAATCTTTT
TGGTGATAACGTTGAAATGAGATGGGTAGATGCTTATTTTCCATTCACTC
ATCCCTCATGGGAACTTGAAGTCAAGTTGAACGGTGAGTGGATGGAAATG
TTGGGGTGTGGCATCTTGGAACAACAGATCTTAAAATATGCTGGTGCAGG
TGATCGGATTGGTTGGGCTTTTGGTCTCGGTTTAGAGAGATTCGCCATGA
AGTTGTTTGATATTCCTGATATCAGGTTATTCTGGAGTGAAGACGAACGT
TTTCTTAAGCAGTTCAAGACAGGTGTTGACACCACATTCCAGCCGTTCAG
TAAATATCCGCCTTCTTACAAAGACATTTCATTTTGGGTGAATGATGGGA
ATTTCTCGTCAAATGATTTATTTGAAATCGCAAGAAGTGTAGGTGGAGAT
GTTATTGAAGAGATGACATTAGTGGACCAATTCGTACATCCAAAAACACA
ACGCGAATCTCATTGTTACCGCATCACGTACAGAGCTATGGATAGAACAC
TTAGAGACGAAGAAGTCAATgatgtccaaaacaaactaaGATCTGAGGCT
GCGAAATTACTGCATATTGAACTAAGATGATCATCAAGTCTAGattgttt
tattggtttgttGTTATGAAAAGTAGATTCAAGATGTTTCTCAACAACAC
ATACAACATGCTACCCAACATGCTACCACTACACTCCTACACCAGCACAT
TAAATGTCCACAGATTTGTTCACAGACAACAGTTTTTCCTGAGTGAGGAA
TCTGGATTGGTGAAATAGCTCTAGTAATTGaatggatgaaaattgaaatt
acaaTTCTCAAAAATGAAAGTCTTATCGTATTGAGAAGTATCCAATTTTA
TGGTctgttaaaaataaaacaaaaacctgAGACTTCAAATTATCGGTATG
GTGCAGTATGGTGTTGTATTTTATAGAGTTTTCAGTGTTTAACTTGGAGT
TAATTTTAGTGCACAAGTCATGTCACGGTCTAATACCTTGAGATAAAGat
gacaaaataaaaatgtaaaattgtaaatacattttgaaaaattaggaTAA
ATGAAATTGCATTTTTATACTAGGTTTTCATAATATATATTTATGTAGCA
TATAGTCAGAGaatgaaagaacaa
Run BLAST on NCBI

protein sequence of TCONS_00007209-protein

>TCONS_00007209-protein ID=TCONS_00007209-protein|Name=TCONS_00007209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MYTCVVIQELIKMNVILRQRLRHLKNSNTTTAGYWLRCMSTLETIELNGR
NYKKDHMTNVPQNIISRLNKQLHNTKDHPLEIVKSKIVDYFHGYFRNRHG
GCVFASIDNISPVVTVQQNFDNLLVPKDHVSRSKNDNYYINDLQMLRAHT
TAHEIDLISSGWNAFLNTGDCYRRDAIDKSHFPVFHQLEGVRIFDDFELF
EETKDNSLRILEKTASMRTEEKQAEHTIDAARITEFNLKYTLMKLVENLF
GDNVEMRWVDAYFPFTHPSWELEVKLNGEWMEMLGCGILEQQILKYAGAG
DRIGWAFGLGLERFAMKLFDIPDIRLFWSEDERFLKQFKTGVDTTFQPFS
KYPPSYKDISFWVNDGNFSSNDLFEIARSVGGDVIEEMTLVDQFVHPKTQ
RESHCYRITYRAMDRTLRDEEVNDVQNKLRSEAAKLLHIELR
Run BLAST on NCBI

transcript from alignment at sc0000074:645397..649753-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007209 ID=TCONS_00007209|Name=TCONS_00007209|organism=Clytia hemisphaerica|type=transcript|length=4357bp|location=Sequence derived from alignment at sc0000074:645397..649753- (Clytia hemisphaerica)
CATGTACACATGTGTTGTTATTCAAGAGGTAAGAGTAAGACTAGTTAGTT
TCTAATCCTATAGGGTTTTAAGCTTAGACTGATGGGTGGTTGAAAACAAA
GGTGATAAAGAGAATGAAAAATAATAATAAAGCGATAGTGGTCAGGGGAA
GAATGTGAAAATGGACATTTTCGCCTTTCCATTCACCATTGTATGTCAAA
ATTCTGGTGGCCGAAGTGCCGTGGCGGAATTCCCTTAGAAAGTATGCAAA
ACATATGCAAAAGAAAGTATTAAAAAAACTTACATGCAGAATTGGCACCA
TATTGAAGTGTAATCTTGTAGATGAAAGATTAAATTTGCTTCTCTTGAAA
ACTAAAAATAATTATATTCGCTCATCTCTTAGAACGAGCACTTCAAAAAA
CCATAACATTAGACATAAACTCAAGCTGAAAAATCACCAGCAACTAGGTA
CAAAAATAATCCTTATTCGGCTGGCGGTAAATTGTTCTCCTGGGAGTAAA
ACCGGTAAATGAAATAATTGATGTTTTTTGTTTTTTTGGGTCCCTTGGAA
CATAAGCTACAATAAGATGTCACAAAACATTATTGCAATTTTCGAAATAC
CGAATAATTTTGCCAAAATTTCCGAAATTCTGTAAAAAAAGTACTTGCAA
TTCTGATACTGATTTTTTGGGGGTATTTTTCCTCGCTTTGACTAAGTTTT
CATCAAATTTGATTTTTCATGTATGAATTCCGAAAAAGGGGGACAAAAAC
TTTATAATACTGAAATTTTGAAGCAAAAATTAATAAATTTTCCATACCGA
AACAATTTCAGAATTCCGAATTACCGAAGGAATTTTGCCCGATTTCTAAA
ATTTATAAGAAAAAGGGTCAATTTCCGCAATTCCGAAATACCGTACGCCC
CCATTATATTGGAACTCTATTTTCTTGTCTAACACTGCCTAATAGCCAGA
GAGGTTTTCGATATTCCTTTCTGTTATGCTAATAAACTAGCAAACTTATA
AGTTGCTTGTTTTTATTGCATTTTGTCTAACTTCAGAGTACTGTAAGTTG
GTCTAATGTCAACAACCCCTTCCAATCTAGACTCCTTTTTTAGGGCTGAG
AGGAAGATGGAAAAAGAAAAGACAGAATTGCTGATTAAATTTTTTTTTAA
TCTCTGGTCGCTAAGTAAAGACATATTTTCTAGTGATTCTGACCTTAAAA
AGAACCAAAGAAAGAAGGGTGATGAAATTAGTTAGAGGGTTGTCGACATT
TTAGACTAACTTATGGTAATTATAATTAAATGTTGAACAGTGAAAAAAAA
TGCGACTATAATATTTTGATTTTTCCCCAACATGTTTCGGATCCGGACCG
TTCTCAAGGGAATGGGATGGTAATTATTTTTTCCAAAAAACATTTTTATT
TTCTCTCAATCAAATTTTAACTTGTAACGCGTTGTGTTATGATAGCCAAT
CAATAATTTCCACAAGTTTTTTAAAGACAATTTCTTGTTTCATTGAGAAA
TTTGTGTATCGTCATAACATGGAAAAGTTTATTATTTAGGGAAACTTAAT
AATGATTTTATGTTACATCATCATAATTTTAGCTGATAAAAATGAATGTC
ATCTTGAGACAGAGATTAAGACATTTGAAAAATTCTAACACAACTACAGC
TGGCTATTGGTTAAGATGTATGTCAACACTAGAAACCATTGAATTAAATG
GACGCAATTACAAGAAAGATCACATGACCAATGTCCCTCAAAATATTATC
AGCAGACTCAATAAACAATTACACAACACAAAGGATCACCCATTAGAGAT
TGTAAAATCAAAGATAGTGGATTATTTTCATGGATACTTTCGTAACCGTC
ATGGTGGATGTGTTTTTGCCTCTATAGACAATATCAGCCCTGTTGTAACT
GTACAACAGAATTTTGACAATTTGTTAGTACCAAAAGACCATGTGAGCCG
TAGTAAAAATGACAATTATTATATCAATGATCTTCAGATGTTGAGAGCTC
ACACTACAGCCCATGAAATTGATTTAATAAGCAGTGGTTGGAATGCTTTC
TTGAACACTGGGGATTGTTACAGAAGAGATGCAATTGATAAGAGTCATTT
CCCAGTTTTCCATCAGTTAGAAGGTGTACGTATCTTTGATGACTTCGAAC
TGTTCGAGGAAACAAAGGTTTGTTTTAATACTATTTCTTGACTATAATAA
TTCAAAGTCATTATATATGCATAATGTGATGCCTTGCCCCAATATTATTG
GCTTTTTTTTAAGAAGATTTTTGTCAATTTTTTATGTCTTTAGCCAGGAT
TTTAGCAGAGATGAGTTTTTTTTATCAAAGTGGCTGAACTGTTGCAAAGG
GCATGTTTGTGCTGTTAATTTTTGGTACATATATTTTGAAATTTTGTCCT
TTGTAGGATAATTCCTTACGTATTTTGGAGAAAACTGCATCAATGAGGAC
AGAAGAAAAACAAGCAGAACACACGATAGATGCTGCACGAATCACAGAGT
TTAATTTAAAATATACTCTAATGAAACTTGTGGAAAATCTTTTTGGTGAT
AACGTTGAAATGAGATGGGTAGATGCTTATTTTCCATTCACTCATCCCTC
ATGGGAACTTGAAGTCAAGTTGAACGGTGAGTGGATGGAAATGTTGGGGT
GTGGCATCTTGGAACAACAGATCTTAAAATATGGTAAAACTGTTTGTTTA
TGGTAAATTTTAAGTTAAAGCTATAAAGCTAAGAAGAGTTTTGCGAGAGT
TTCAATTATAAAAAACTTCGCTAAGCCAAAAGCTCAGTTGAGATTTTCTA
ATTCATTTTGTTAGATGTAAAAGTTTCTTATGAAAAAAATTCTCTATACT
TTCCAAACATCTTCATATAATATTTTTCTTGAGAAAATTACAGTTTCAGT
TTGCTTTAAATCAAAAGTAAATAAATCAATTTCTGTTCATCTATAGCTGG
TGCAGGTGATCGGATTGGTTGGGCTTTTGGTCTCGGTTTAGAGAGATTCG
CCATGAAGTTGTTTGATATTCCTGATATCAGGTTATTCTGGAGTGAAGAC
GAACGTTTTCTTAAGCAGTTCAAGACAGGTGTTGACACCACATTCCAGCC
GTTCAGTAAATATCCGCCTTCTTACAAAGACATTTCATTTTGGGTGAATG
ATGGGAATTTCTCGTCAAATGATTTATTTGAAATCGCAAGAAGTGTAGGT
GGAGATGTTATTGAAGAGGTAAAAACAATACATTCTTTTAAACTGTATCA
TTTGAAAGAAAAAAGTTCAAACAGTCAACAAACGAGAACATTTTATATCG
ACTTATCAACATTTTATGTGTCTTTCTCAAAGTGATTATCTTACCCACAT
CGTATTATAATTTTTGAAGCAATTTTTATCAGAAAAAATAAATTCATGTA
TCGGTCATAATCTCATAATTGCCCTCGATTTTTTCATCTTGCATTTAATT
AAATGGAAATTCAAATTTTATTATGATCTTCTCTCTCAATTCATACTGTG
AAACAGTTAAATAGGAGAAATTTCGAATCCTTTTTGTCTTCAAAATTTCC
TAGTAAAAATGTTTGTGAAATGTTTTTTTAATTTCAAATTTTTGATTTTT
GAGAGGACAAAGTCCTTTATTTTCTATCTCATTCTTTCTCTTCAGATGAC
ATTAGTGGACCAATTCGTACATCCAAAAACACAACGCGAATCTCATTGTT
ACCGCATCACGTACAGAGCTATGGATAGAACACTTAGAGACGAAGAAGTC
AATGATGTCCAAAACAAACTAAGATCTGAGGCTGCGAAATTACTGCATAT
TGAACTAAGATGATCATCAAGTCTAGATTGTTTTATTGGTTTGTTGTTAT
GAAAAGTAGATTCAAGATGTTTCTCAACAACACATACAACATGCTACCCA
ACATGCTACCACTACACTCCTACACCAGCACATTAAATGTCCACAGATTT
GTTCACAGACAACAGTTTTTCCTGAGTGAGGAATCTGGATTGGTGAAATA
GCTCTAGTAATTGAATGGATGAAAATTGAAATTACAATTCTCAAAAATGA
AAGTCTTATCGTATTGAGAAGTATCCAATTTTATGGTCTGTTAAAAATAA
AACAAAAACCTGAGACTTCAAATTATCGGTATGGTGCAGTATGGTGTTGT
ATTTTATAGAGTTTTCAGTGTTTAACTTGGAGTTAATTTTAGTGCACAAG
TCATGTCACGGTCTAATACCTTGAGATAAAGATGACAAAATAAAAATGTA
AAATTGTAAATACATTTTGAAAAATTAGGATAAATGAAATTGCATTTTTA
TACTAGGTTTTCATAATATATATTTATGTAGCATATAGTCAGAGAATGAA
AGAACAA

Coding sequence (CDS) from alignment at sc0000074:645397..649753-

>TCONS_00007209 ID=TCONS_00007209|Name=TCONS_00007209|organism=Clytia hemisphaerica|type=CDS|length=6645bp|location=Sequence derived from alignment at sc0000074:645397..649753- (Clytia hemisphaerica)
ATGACATTAGTGGACCAATTCGTACATCCAAAAACACAACGCGAATCTCA
TTGTTACCGCATCACGTACAGAGCTATGGATAGAACACTTAGAGACGAAG
AAGTCAATGATGTCCAAAACAAACTAAGATCTGAGGCTGCGAAATTACTG
CATATTGAACTAAGATGACTGGTGCAGGTGATCGGATTGGTTGGGCTTTT
GGTCTCGGTTTAGAGAGATTCGCCATGAAGTTGTTTGATATTCCTGATAT
CAGGTTATTCTGGAGTGAAGACGAACGTTTTCTTAAGCAGTTCAAGACAG
GTGTTGACACCACATTCCAGCCGTTCAGTAAATATCCGCCTTCTTACAAA
GACATTTCATTTTGGGTGAATGATGGGAATTTCTCGTCAAATGATTTATT
TGAAATCGCAAGAAGTGTAGGTGGAGATGTTATTGAAGAGGATAATTCCT
TACGTATTTTGGAGAAAACTGCATCAATGAGGACAGAAGAAAAACAAGCA
GAACACACGATAGATGCTGCACGAATCACAGAGTTTAATTTAAAATATAC
TCTAATGAAACTTGTGGAAAATCTTTTTGGTGATAACGTTGAAATGAGAT
GGGTAGATGCTTATTTTCCATTCACTCATCCCTCATGGGAACTTGAAGTC
AAGTTGAACGGTGAGTGGATGGAAATGTTGGGGTGTGGCATCTTGGAACA
ACAGATCTTAAAATATGCTGATAAAAATGAATGTCATCTTGAGACAGAGA
TTAAGACATTTGAAAAATTCTAACACAACTACAGCTGGCTATTGGTTAAG
ATGTATGTCAACACTAGAAACCATTGAATTAAATGGACGCAATTACAAGA
AAGATCACATGACCAATGTCCCTCAAAATATTATCAGCAGACTCAATAAA
CAATTACACAACACAAAGGATCACCCATTAGAGATTGTAAAATCAAAGAT
AGTGGATTATTTTCATGGATACTTTCGTAACCGTCATGGTGGATGTGTTT
TTGCCTCTATAGACAATATCAGCCCTGTTGTAACTGTACAACAGAATTTT
GACAATTTGTTAGTACCAAAAGACCATGTGAGCCGTAGTAAAAATGACAA
TTATTATATCAATGATCTTCAGATGTTGAGAGCTCACACTACAGCCCATG
AAATTGATTTAATAAGCAGTGGTTGGAATGCTTTCTTGAACACTGGGGAT
TGTTACAGAAGAGATGCAATTGATAAGAGTCATTTCCCAGTTTTCCATCA
GTTAGAAGGTGTACGTATCTTTGATGACTTCGAACTGTTCGAGGAAACAA
AGATGTACACATGTGTTGTTATTCAAGAGATGACATTAGTGGACCAATTC
GTACATCCAAAAACACAACGCGAATCTCATTGTTACCGCATCACGTACAG
AGCTATGGATAGAACACTTAGAGACGAAGAAGTCAATGATGTCCAAAACA
AACTAAGATCTGAGGCTGCGAAATTACTGCATATTGAACTAAGATGACTG
GTGCAGGTGATCGGATTGGTTGGGCTTTTGGTCTCGGTTTAGAGAGATTC
GCCATGAAGTTGTTTGATATTCCTGATATCAGGTTATTCTGGAGTGAAGA
CGAACGTTTTCTTAAGCAGTTCAAGACAGGTGTTGACACCACATTCCAGC
CGTTCAGTAAATATCCGCCTTCTTACAAAGACATTTCATTTTGGGTGAAT
GATGGGAATTTCTCGTCAAATGATTTATTTGAAATCGCAAGAAGTGTAGG
TGGAGATGTTATTGAAGAGGATAATTCCTTACGTATTTTGGAGAAAACTG
CATCAATGAGGACAGAAGAAAAACAAGCAGAACACACGATAGATGCTGCA
CGAATCACAGAGTTTAATTTAAAATATACTCTAATGAAACTTGTGGAAAA
TCTTTTTGGTGATAACGTTGAAATGAGATGGGTAGATGCTTATTTTCCAT
TCACTCATCCCTCATGGGAACTTGAAGTCAAGTTGAACGGTGAGTGGATG
GAAATGTTGGGGTGTGGCATCTTGGAACAACAGATCTTAAAATATGCTGA
TAAAAATGAATGTCATCTTGAGACAGAGATTAAGACATTTGAAAAATTCT
AACACAACTACAGCTGGCTATTGGTTAAGATGTATGTCAACACTAGAAAC
CATTGAATTAAATGGACGCAATTACAAGAAAGATCACATGACCAATGTCC
CTCAAAATATTATCAGCAGACTCAATAAACAATTACACAACACAAAGGAT
CACCCATTAGAGATTGTAAAATCAAAGATAGTGGATTATTTTCATGGATA
CTTTCGTAACCGTCATGGTGGATGTGTTTTTGCCTCTATAGACAATATCA
GCCCTGTTGTAACTGTACAACAGAATTTTGACAATTTGTTAGTACCAAAA
GACCATGTGAGCCGTAGTAAAAATGACAATTATTATATCAATGATCTTCA
GATGTTGAGAGCTCACACTACAGCCCATGAAATTGATTTAATAAGCAGTG
GTTGGAATGCTTTCTTGAACACTGGGGATTGTTACAGAAGAGATGCAATT
GATAAGAGTCATTTCCCAGTTTTCCATCAGTTAGAAGGTGTACGTATCTT
TGATGACTTCGAACTGTTCGAGGAAACAAAGATGTACACATGTGTTGTTA
TTCAAGAGATGACATTAGTGGACCAATTCGTACATCCAAAAACACAACGC
GAATCTCATTGTTACCGCATCACGTACAGAGCTATGGATAGAACACTTAG
AGACGAAGAAGTCAATGATGTCCAAAACAAACTAAGATCTGAGGCTGCGA
AATTACTGCATATTGAACTAAGATGACTGGTGCAGGTGATCGGATTGGTT
GGGCTTTTGGTCTCGGTTTAGAGAGATTCGCCATGAAGTTGTTTGATATT
CCTGATATCAGGTTATTCTGGAGTGAAGACGAACGTTTTCTTAAGCAGTT
CAAGACAGGTGTTGACACCACATTCCAGCCGTTCAGTAAATATCCGCCTT
CTTACAAAGACATTTCATTTTGGGTGAATGATGGGAATTTCTCGTCAAAT
GATTTATTTGAAATCGCAAGAAGTGTAGGTGGAGATGTTATTGAAGAGGA
TAATTCCTTACGTATTTTGGAGAAAACTGCATCAATGAGGACAGAAGAAA
AACAAGCAGAACACACGATAGATGCTGCACGAATCACAGAGTTTAATTTA
AAATATACTCTAATGAAACTTGTGGAAAATCTTTTTGGTGATAACGTTGA
AATGAGATGGGTAGATGCTTATTTTCCATTCACTCATCCCTCATGGGAAC
TTGAAGTCAAGTTGAACGGTGAGTGGATGGAAATGTTGGGGTGTGGCATC
TTGGAACAACAGATCTTAAAATATGCTGATAAAAATGAATGTCATCTTGA
GACAGAGATTAAGACATTTGAAAAATTCTAACACAACTACAGCTGGCTAT
TGGTTAAGATGTATGTCAACACTAGAAACCATTGAATTAAATGGACGCAA
TTACAAGAAAGATCACATGACCAATGTCCCTCAAAATATTATCAGCAGAC
TCAATAAACAATTACACAACACAAAGGATCACCCATTAGAGATTGTAAAA
TCAAAGATAGTGGATTATTTTCATGGATACTTTCGTAACCGTCATGGTGG
ATGTGTTTTTGCCTCTATAGACAATATCAGCCCTGTTGTAACTGTACAAC
AGAATTTTGACAATTTGTTAGTACCAAAAGACCATGTGAGCCGTAGTAAA
AATGACAATTATTATATCAATGATCTTCAGATGTTGAGAGCTCACACTAC
AGCCCATGAAATTGATTTAATAAGCAGTGGTTGGAATGCTTTCTTGAACA
CTGGGGATTGTTACAGAAGAGATGCAATTGATAAGAGTCATTTCCCAGTT
TTCCATCAGTTAGAAGGTGTACGTATCTTTGATGACTTCGAACTGTTCGA
GGAAACAAAGATGTACACATGTGTTGTTATTCAAGAGATGACATTAGTGG
ACCAATTCGTACATCCAAAAACACAACGCGAATCTCATTGTTACCGCATC
ACGTACAGAGCTATGGATAGAACACTTAGAGACGAAGAAGTCAATGATGT
CCAAAACAAACTAAGATCTGAGGCTGCGAAATTACTGCATATTGAACTAA
GATGACTGGTGCAGGTGATCGGATTGGTTGGGCTTTTGGTCTCGGTTTAG
AGAGATTCGCCATGAAGTTGTTTGATATTCCTGATATCAGGTTATTCTGG
AGTGAAGACGAACGTTTTCTTAAGCAGTTCAAGACAGGTGTTGACACCAC
ATTCCAGCCGTTCAGTAAATATCCGCCTTCTTACAAAGACATTTCATTTT
GGGTGAATGATGGGAATTTCTCGTCAAATGATTTATTTGAAATCGCAAGA
AGTGTAGGTGGAGATGTTATTGAAGAGGATAATTCCTTACGTATTTTGGA
GAAAACTGCATCAATGAGGACAGAAGAAAAACAAGCAGAACACACGATAG
ATGCTGCACGAATCACAGAGTTTAATTTAAAATATACTCTAATGAAACTT
GTGGAAAATCTTTTTGGTGATAACGTTGAAATGAGATGGGTAGATGCTTA
TTTTCCATTCACTCATCCCTCATGGGAACTTGAAGTCAAGTTGAACGGTG
AGTGGATGGAAATGTTGGGGTGTGGCATCTTGGAACAACAGATCTTAAAA
TATGCTGATAAAAATGAATGTCATCTTGAGACAGAGATTAAGACATTTGA
AAAATTCTAACACAACTACAGCTGGCTATTGGTTAAGATGTATGTCAACA
CTAGAAACCATTGAATTAAATGGACGCAATTACAAGAAAGATCACATGAC
CAATGTCCCTCAAAATATTATCAGCAGACTCAATAAACAATTACACAACA
CAAAGGATCACCCATTAGAGATTGTAAAATCAAAGATAGTGGATTATTTT
CATGGATACTTTCGTAACCGTCATGGTGGATGTGTTTTTGCCTCTATAGA
CAATATCAGCCCTGTTGTAACTGTACAACAGAATTTTGACAATTTGTTAG
TACCAAAAGACCATGTGAGCCGTAGTAAAAATGACAATTATTATATCAAT
GATCTTCAGATGTTGAGAGCTCACACTACAGCCCATGAAATTGATTTAAT
AAGCAGTGGTTGGAATGCTTTCTTGAACACTGGGGATTGTTACAGAAGAG
ATGCAATTGATAAGAGTCATTTCCCAGTTTTCCATCAGTTAGAAGGTGTA
CGTATCTTTGATGACTTCGAACTGTTCGAGGAAACAAAGATGTACACATG
TGTTGTTATTCAAGAGATGACATTAGTGGACCAATTCGTACATCCAAAAA
CACAACGCGAATCTCATTGTTACCGCATCACGTACAGAGCTATGGATAGA
ACACTTAGAGACGAAGAAGTCAATGATGTCCAAAACAAACTAAGATCTGA
GGCTGCGAAATTACTGCATATTGAACTAAGATGACTGGTGCAGGTGATCG
GATTGGTTGGGCTTTTGGTCTCGGTTTAGAGAGATTCGCCATGAAGTTGT
TTGATATTCCTGATATCAGGTTATTCTGGAGTGAAGACGAACGTTTTCTT
AAGCAGTTCAAGACAGGTGTTGACACCACATTCCAGCCGTTCAGTAAATA
TCCGCCTTCTTACAAAGACATTTCATTTTGGGTGAATGATGGGAATTTCT
CGTCAAATGATTTATTTGAAATCGCAAGAAGTGTAGGTGGAGATGTTATT
GAAGAGGATAATTCCTTACGTATTTTGGAGAAAACTGCATCAATGAGGAC
AGAAGAAAAACAAGCAGAACACACGATAGATGCTGCACGAATCACAGAGT
TTAATTTAAAATATACTCTAATGAAACTTGTGGAAAATCTTTTTGGTGAT
AACGTTGAAATGAGATGGGTAGATGCTTATTTTCCATTCACTCATCCCTC
ATGGGAACTTGAAGTCAAGTTGAACGGTGAGTGGATGGAAATGTTGGGGT
GTGGCATCTTGGAACAACAGATCTTAAAATATGCTGATAAAAATGAATGT
CATCTTGAGACAGAGATTAAGACATTTGAAAAATTCTAACACAACTACAG
CTGGCTATTGGTTAAGATGTATGTCAACACTAGAAACCATTGAATTAAAT
GGACGCAATTACAAGAAAGATCACATGACCAATGTCCCTCAAAATATTAT
CAGCAGACTCAATAAACAATTACACAACACAAAGGATCACCCATTAGAGA
TTGTAAAATCAAAGATAGTGGATTATTTTCATGGATACTTTCGTAACCGT
CATGGTGGATGTGTTTTTGCCTCTATAGACAATATCAGCCCTGTTGTAAC
TGTACAACAGAATTTTGACAATTTGTTAGTACCAAAAGACCATGTGAGCC
GTAGTAAAAATGACAATTATTATATCAATGATCTTCAGATGTTGAGAGCT
CACACTACAGCCCATGAAATTGATTTAATAAGCAGTGGTTGGAATGCTTT
CTTGAACACTGGGGATTGTTACAGAAGAGATGCAATTGATAAGAGTCATT
TCCCAGTTTTCCATCAGTTAGAAGGTGTACGTATCTTTGATGACTTCGAA
CTGTTCGAGGAAACAAAGATGTACACATGTGTTGTTATTCAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004041XLOC_004041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007209-exon-sc0000074-1575043694:649726..649753TCONS_00007209-exon-sc0000074-1575043694:649726..649753Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1575043694:647587..648171TCONS_00007209-exon-sc0000074-1575043694:647587..648171Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1575043694:647071..647347TCONS_00007209-exon-sc0000074-1575043694:647071..647347Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1575043694:646536..646807TCONS_00007209-exon-sc0000074-1575043694:646536..646807Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1575043694:645397..646108TCONS_00007209-exon-sc0000074-1575043694:645397..646108Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1510915933:649726..649753TCONS_00007209-exon-sc0000074-1510915933:649726..649753Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1510915933:647587..648171TCONS_00007209-exon-sc0000074-1510915933:647587..648171Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1510915933:647071..647347TCONS_00007209-exon-sc0000074-1510915933:647071..647347Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1510915933:646536..646807TCONS_00007209-exon-sc0000074-1510915933:646536..646807Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1510915933:645397..646108TCONS_00007209-exon-sc0000074-1510915933:645397..646108Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1491911889:649726..649753TCONS_00007209-exon-sc0000074-1491911889:649726..649753Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1491911889:647587..648171TCONS_00007209-exon-sc0000074-1491911889:647587..648171Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1491911889:647071..647347TCONS_00007209-exon-sc0000074-1491911889:647071..647347Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1491911889:646536..646807TCONS_00007209-exon-sc0000074-1491911889:646536..646807Clytia hemisphaericaexon
TCONS_00007209-exon-sc0000074-1491911889:645397..646108TCONS_00007209-exon-sc0000074-1491911889:645397..646108Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007209-proteinTCONS_00007209-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:645397..649753 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
62.3897	61.4008	18.7941	14.4453	32.4992	23.2971	26.4907	29.032	20.5953	19.9726	14.248	11.7217	11.3087	8.99208	12.8132	15.1918	24.8575	28.2653	6.43283	7.11074	23.7744	20.801	50.5972	46.6665	19.972	22.2347	12.0668	7.82659	26.0388	28.2403
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005121Fdx_antiC-bd
IPR004530Phe-tRNA-synth_IIc_mito
IPR002319Phenylalanyl-tRNA_Synthase
IPR006195aa-tRNA-synth_II
Vocabulary: Biological Process
TermDefinition
GO:0006432phenylalanyl-tRNA aminoacylation
GO:0043039tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0004826phenylalanine-tRNA ligase activity
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0000049tRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006432 phenylalanyl-tRNA aminoacylation
biological_process GO:0043039 tRNA aminoacylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004826 phenylalanine-tRNA ligase activity
molecular_function GO:0000049 tRNA binding
Blast
[Close]
BLAST of TCONS_00007209 vs. Swiss-Prot (Human)
Match: SYFM (Phenylalanine--tRNA ligase, mitochondrial OS=Homo sapiens GN=FARS2 PE=1 SV=1)

HSP 1 Score: 468.774 bits (1205), Expect = 4.035e-159
Identity = 211/403 (52.36%), Postives = 293/403 (72.70%), Query Frame = 2 
Query:  131 TIELNGRNYKKDHMTNVPQNIISRLNKQLHNTKDHPLEIVKSKIVDYFHGYFRNRHGGCVFASIDNISPVVTVQQNFDNLLVPKDHVSRSKNDNYYINDLQMLRAHTTAHEIDLISSGWNAFLNTGDCYRRDAIDKSHFPVFHQLEGVRIFDDFELFEETKDN-SLRILEKTASMRTEEKQAEHTIDAARITEFNLKYTLMKLVENLFGDNVEMRWVDAYFPFTHPSWELEVKLNGEWMEMLGCGILEQQILKYAGAGDRIGWAFGLGLERFAMKLFDIPDIRLFWSEDERFLKQF---KTGVDTTFQPFSKYPPSYKDISFWVNDGNFSSNDLFEIARSVGGDVIEEMTLVDQFVHPKTQRESHCYRITYRAMDRTLRDEEVNDVQNKLRSEAAKLLHIELR 1327
             +EL G++Y +D  +N+ + +++R+ + LHN + HPL ++K ++ ++F+  +  R G  +F+  DN+SPVVT  QNFD+LL+P DH SR K DNYY+N   MLRAHT+AH+ DL+ +G +AFL  GD YRRD ID  H+P+FHQLE VR+F   ELF   KD  SL++ E+++  R+  KQ  HT++A ++ EF+LK TL +L+ +LFGD +E+RWVD YFPFTHPS+E+E+  +GEW+E+LGCG++EQQ++  AGA DRIGWAFGLGLER AM L+DIPDIRLFW EDERFLKQF          FQP SKYP    DISFW+   N++ ND +++ R++GGD++E++ L+D+FVHPKT + SHCYRITYR M+RTL   EV  +   L+  A +LL +E R
Sbjct:   50 VVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSS--RSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 450
The following BLAST results are available for this feature:
BLAST of TCONS_00007209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYFM4.035e-15952.36Phenylalanine--tRNA ligase, mitochondrial OS=Homo ... [more]
back to top