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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007208 ID=TCONS_00007208|Name=TCONS_00007208|organism=Clytia hemisphaerica|type=transcript|length=1844bpRun BLAST on NCBI protein sequence of TCONS_00007208-protein >TCONS_00007208-protein ID=TCONS_00007208-protein|Name=TCONS_00007208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp MMLEFVEFLSSSDDEEEHEMDECDWTRTNQSKGETATNEAIEEHTDSDDNRun BLAST on NCBI transcript from alignment at sc0000074:634006..645066- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007208 ID=TCONS_00007208|Name=TCONS_00007208|organism=Clytia hemisphaerica|type=transcript|length=11061bp|location=Sequence derived from alignment at sc0000074:634006..645066- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000074:634006..645066- >TCONS_00007208 ID=TCONS_00007208|Name=TCONS_00007208|organism=Clytia hemisphaerica|type=CDS|length=22722bp|location=Sequence derived from alignment at sc0000074:634006..645066- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007208 vs. Swiss-Prot (Human)
Match: CC112 (Coiled-coil domain-containing protein 112 OS=Homo sapiens GN=CCDC112 PE=1 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 8.650e-34 Identity = 87/218 (39.91%), Postives = 135/218 (61.93%), Query Frame = 2
Query: 410 LEEMENKYNSQRKIERETLKDNLSKTGIKLERFKRDKLPAQKSPANXXXXXXXXXXXXADIMQMKEKQKLIYEDLMMEEKSLSIEIESCNKKFDNWS--NKTLPIPQSAIKKKNEEGK--DERLPEEVILFEKFVQVTNGHQGGWDDIDHQLFVKLQKQYKKPSQFMEKALESIPTHTENEIKQHVEWYQQYTVLNEKKREAIRKWKKNKTNRKDDML 1051
LEE+ENK RK ER ++ L+K +++ + + +P +EKL+ +MEEIE I KE+Q+LIYE+L+ EEK+ + E+ + ++K D W+ N AI K K LPEEV+ FEKF+Q T G QG WDD DHQ FVK++ ++K FME+ LE +P T++E++QH +WYQ++ L E+K+E+I+ WK K +++++
Sbjct: 23 LEELENKLIHSRKTERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMMEEIENAINTFKEEQRLIYEELIKEEKTTNNELSAISRKIDTWALGNSETEKAFRAISSKVPVDKVTPSTLPEEVLDFEKFLQQTGGRQGAWDDYDHQNFVKVRNKHKGKPTFMEEVLEHLPGKTQDEVQQHEKWYQKFLALEERKKESIQIWKTKKQQKREEIF 240 The following BLAST results are available for this feature:
BLAST of TCONS_00007208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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