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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007203 ID=TCONS_00007203|Name=TCONS_00007203|organism=Clytia hemisphaerica|type=transcript|length=4426bpRun BLAST on NCBI protein sequence of TCONS_00007203-protein >TCONS_00007203-protein ID=TCONS_00007203-protein|Name=TCONS_00007203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1116bp MRAESLDLISLMQKNAANIRNICILAHVDHGKTTLADSLIASNGIISSRLRun BLAST on NCBI transcript from alignment at sc0000074:607777..627737- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007203 ID=TCONS_00007203|Name=TCONS_00007203|organism=Clytia hemisphaerica|type=transcript|length=19961bp|location=Sequence derived from alignment at sc0000074:607777..627737- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000074:607777..627737- >TCONS_00007203 ID=TCONS_00007203|Name=TCONS_00007203|organism=Clytia hemisphaerica|type=CDS|length=67020bp|location=Sequence derived from alignment at sc0000074:607777..627737- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007203 vs. Swiss-Prot (Human)
Match: EFL1 (Elongation factor-like GTPase 1 OS=Homo sapiens GN=EFL1 PE=1 SV=2) HSP 1 Score: 1130.55 bits (2923), Expect = 0.000e+0 Identity = 600/1182 (50.76%), Postives = 786/1182 (66.50%), Query Frame = 1
Query: 61 MRAESLDLISLMQKNAANIRNICILAHVDHGKTTLADSLIASNGIISSRLAGKLRYMDSREDEQQRGITMKSSAISLYHMKDKQNYLVNLIDSPGHIDFSSEVSTAVRLCDGAIVIVDVVEGVCPQTNAVLRQAWLEGIKPCLVLNKMDRLITELKLTPLEAFYHLQKVLEQVNAITGSLFSTKIMEESSKXXXXXXX--XXXXXXXVFDWSSGLDDADDENLYFSPESGNVVFASAIDGWAFGIDTFADLYSAKLGISKRILVKTLWGDYFLNMKAKKILKGAYTKGKKPLFVQFILDNLWILYEAVLNRDKPKITKIVESLNVKITS--VKFSEPKVHLQAILRQWLPLSSSILDLVCSYLPSPLEMREDRVKKLMCSGFKKFESYPDDTQKLKDDFLKCSSREDAPVIVFVSKMISVDAASLPEKRRRPLTXXXXXXXXXXXXQRHAEKNIQRQ------------------EGEEGDNTEQNXXXXXXXXXXXXXXXXXXHFVAFARVFSGTLKKGMKLYVLGPKYDP--SLKIVEKSHTEVPATSSKSQHQFDSQQLVSSNGAVLCEIKDLYLMMGKEFEALDEVPAGNMIGINGFSDSILKSGTASTSLACPPFTSMTFEAKPIVRVAVEPRQPSQLQQLVRGMRLLNQADPCVEVMVQESGEYVIVAAGEVHLQRCLDDLTERFAKIKIRASDPIVPFRESVVNPPKIDMVNEEISEINKSMAHHTQRLPAFMLKEIQSFSDLIHKHGEETAVQGGPDESSDVILSKNQVIEAKKSAKMKEKTGLIEAFTANKQYCMCLQAKPLSSDIVDFLDKNFELLKIIQKLSTEPNIEDRKIAIKELTTEIRASIKNLYNQLDTLFENSGKDWRKAIDRIWAVGPKGSFTNILFNNVPDYNRSNIWFGXXXXXXXXXXXXXRMREYDNSIVSGFQLAVQSGPMCEEPMRGVAFMVSDWSIQ--------------------------------------EKQTAE--ESSIK--HGPLSGQHISSFREGCRRAVMAQPMRLMAAMYTCEIQATTEVLGKVYSVINKRLGKILSEDLKEGSDIFDIHAELPVAESFGFAEEIRKKTSGLASPQLIFNRWQVLDEDPFWIPTTEEEYELYGEKADSENQALKYVNKVRHRKGLYVEKKTVEHAEKQRTLKRNK 3408
M SLD + +QKN ANIRNIC+LAHVDHGKTTLAD LI+SNGIISSRLAGKLRYMDSREDEQ RGITMKSSAISL++ + YL+NLIDSPGH+DFSSEVSTAVR+CDG I++VD VEGVCPQT AVLRQAWLE I+P LV+NK+DRLI ELK TP EA+ HL+ +LEQ+NA+TG+LF++K++EE ++ + +E V+DWS+GL+D DD +LYFSPE GNVVF SAIDGW FGI+ FA +YS K+GI K +L+KTLWGDY++NMKAKKI+KG KGKKPLFVQ IL+N+W LY+AVL +DK KI KIV SL +KI + + S+PKV + AI QWLP+S ++L +VC LPSPL++ +RV++LMC+G + F+S+P +TQ LK F+KC S + APVI+FVSKM +VDA +LP+ + RPLT+EE+A++ E A+QRHAEK Q +GEE EQ + +E +++ F+AFARVFSG ++G K++VLGPKY P L+ V + P + H C +++LYL+MG+E E L+EVP GN++GI G D +LKS T + +CPPF + FEA PIVRVAVEP+ PS++ QLV+GM+LLNQADPCV++++QE+GE+V+V AGEVHLQRCLDDL ERFAKI I S+PI+PFRE++ PPK+DMVNEEI + K H +KE QS + G SD GLI T NK + ++A PL ++ L++N +L++ +++L++ N + I + T E K Q T G+ WR +D+IW+ GP+ NIL N D+ S +W G + R R+ NSIVSGFQLA SGPMCEEP+ GV F++ W + EK+T++ ES + +GP SGQ I++ +E CR A+ +P RLMAAMYTC+I AT +VLG+VY+V++KR G++L E++KEG+D+F I A LPVAESFGFA+EIRK+TSGLASPQL+F+ W+++ DPFW+PTTEEEY +GEKADSENQA KY+N VR RKGLYVE+K VEHAEKQRTL +NK
Sbjct: 1 MVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAISLHYATGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLMKTLWGDYYINMKAKKIMKGDQAKGKKPLFVQLILENIWSLYDAVLKKDKDKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDITAERVERLMCTGSQTFDSFPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTQEEIAQRRERARQRHAEKLAAAQGQAPLEPTQDGSAIETCPKGEEPRGDEQQVESMTPKPVLQEENNQES-FIAFARVFSGVARRGKKIFVLGPKYSPLEFLRRVPLGFSAPPDGLPQVPHM------------AYCALENLYLLMGRELEYLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIHISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIH-------QMKEDQS------------KIPEGIQVDSD---------------------GLITITTPNKLATLSVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLT-----GRRWRNIVDQIWSFGPRKCGPNILVNKSEDFQNS-VWTG---PADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK 1120 The following BLAST results are available for this feature:
BLAST of TCONS_00007203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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