TCONS_00007197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007197
Unique NameTCONS_00007197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007197 ID=TCONS_00007197|Name=TCONS_00007197|organism=Clytia hemisphaerica|type=transcript|length=634bp
ctacttttgatatataaaagaACTATCTATCCGAACACTTGAGAACAGCG
CATAAACTGTTCAGCAGGAGCAGGGTCTAAAAGAAAACGCGAACCACATA
CACACCGAAGAATTGGAATTCTAAGAtgaacaaaacacaaaaaattctAT
TGATCACGTGTCTATCATGCATTCTATTGGTTAGCCAATCAACGGCGCTG
ATGAGCCTTGGGGAAAATATTCGAGCCAAAACAATGACTGCACAGGGGAG
TAAACGATACCAACGAACAGCCAAAGAAAACAGAATTACTAATgaTATCT
TAGAAGTTTCAAAATTGAGGAAAAGGATCATTGCAGAACGTTTGAACTTA
TTGGATGAATTAGAGTACATATTGAGATCACGAAATAAGAGGAAATGAAA
ATATAATGACGTCACCATCAATTTGGAAATTTGTAGTATAGCATCAACAT
CGCTCCACGGACGAAATGGCCAAGATccgaaaattcgaaaaagaagAATT
CTCCTCGTGGGAAAAAGAAGACAAGAAGGCCCAACTTTTGtagaataatt
tgaaaaaaaacaacaattatcttttagaaattaaaaaaaattgtttttgt
ttttgtttttctttacacAGTACcatcaaaacta
Run BLAST on NCBI

transcript from alignment at sc0000074:471941..475023-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007197 ID=TCONS_00007197|Name=TCONS_00007197|organism=Clytia hemisphaerica|type=transcript|length=3083bp|location=Sequence derived from alignment at sc0000074:471941..475023- (Clytia hemisphaerica)
CTACTTTTGATATATAAAAGAACTATCTATCCGAACACTTGAGAACAGCG
CATAAACTGTTCAGCAGGAGCAGGGTCTAAAAGAAAACGCGAACCACATA
CACACCGAAGAATTGGAATTCTAAGGTCAGTCTTTTATTTTGTCTTCTCT
TTATCATAAACTTTCTCATTTCACACTACTGAAAATGATTGGGAAACCCT
TTCCAAATTTTTTTTCTGGATTCAAATAAAATGCATTAGATTCTCCGTAG
ATCGAACACGCACACGCATGGGGAATGCAAATGTGTTCGAGTTATGGAGT
AAGCTTTATAAGGCATTGTTAACTGAAGGGATCATAAAACTTGTTTGAGT
TAAGGAGACATTCGAGTTAACAGAGAATCCACTGAATGGAATAATAATTT
ACAAACACTTTTTTAATGAAATTTCAAGTATTTAGAAGGCATGACGAGTT
TCCCGCCGTCAAATAATTCTTCTCAGTCAACAAATTTCGTTCGAATTGGG
AAGATGATTTTTCGGTGGCCGTAGATCTGTTTGACTATCTTGTATATATT
TAATGCTGAATGAAAGATGAAAAGTTTTTACCGGAAGGGTTGCATCATTG
CTTACCTATCACGCTTTGAAATTCCTAGTCTATTTATCTGGTGTGAAATC
GCTTTTTTAAAGAATATTCTTGCCACTGGGACTGGATATGGACTCGATTA
GATTTGATACAAAGCATGCTTAAAATAAGAGCTGATGCTTCTAAGCTATT
TCTATTTAATGATTCTGATGGATGCGTTGTCGGGTGATATAAAAACAATT
CCTTCAATTTTACAGCGTTGGCCTCGTCACATCGTAGAATCATTTATCGG
CTCTGGACCGCGAGGATGAGACTCTTGTTACGAATTTGACACTTATCTTT
GTTTTTCAGATGAACAAAACACAAAAAATTCTATTGATCACGTGTCTATC
ATGCATTCTATTGGTTAGCCAATCAACGGCGCTGATGAGCCTTGGGGAAA
ATATTCGAGCCAAAACAATGACTGCACAGGGGAGTAAACGATACCAACGA
ACAGCCAAAGAAAACAGAATTACTAATGTAAGTACAGTTAACAGTTGCCT
GGATAATTTGTCTGACTTTGATTATTAAGTTTAAGCCCTTTGTATATTTT
ACATTTTCAAACAGGATACCCTAACCTGATAGCAGATGTGACGTTTTCTT
AACGCAACACGCTTTAAAGATCGCTGAAACCTACCTGTATATTTTTGCCT
ACGTCTTAATCGCTTTAGCATACTGGGACAGAAAATATGCAATCTGCTAT
AAGCTTTAATATATAAGCAGGTTTTTAATACAAAAGGTCGTCGACGTAAA
CTTCATTTTCGACCTTTTGAAGGGGCAGGGATGTTGGAAGTCGATAACAA
ACGACGTCATTTTTTAAGATAAACAAGCCTCCATAGCTTGGAGAAAAAAA
TTATATGATAGTATGGAAAATCTTAAATCAATGAAAAAAATTCTAAACAA
ATTTCATAAGTTTAGAAATTTCTCTTTTATCTAAAATCTAAAAAAGCAGG
CTTATCACTATTAACCACTGAGGAGTGTAAGAGCTGCAATCAAAGTCATA
ACATTTGAGAAAAAAGGGAAATTCCAACCAAATCTTATAACCACAAACAA
TTTGGAAATGGTCTAACTTAGACTGGAAGGGTAGAGTTTTAACAGGATCT
GAGGATCCAAAAGTTCAAGAATGGTCCAATAGGGCTCAGAATATAGCGTG
GAAGTCTATAAAGCCCCGAATTGAAATATTCGATTAAATTTATCTATTAG
CCCAAAAGCAACTTTCTCGCCCGAGCTCTAAAAATGAGGAATTAACCAAA
ATTCTCAATATATTTTACCAAGATTTTAGACCGAGATTGCGAGTAAAGTA
ACCACTTCTCGGCATTTTTTAAGCTATTGAGGATTTGAAAAGATGTAAAA
ACTTTGTCCTAGCAGACAATCATGAAAGTATAGCATACATTGATAACAAA
TGGATATATGTTTTACAGTCCTAAGACTTTAACCCTAGGCTAAAACTTTT
ACAGATATACCTGCGATTCTTTGCACCAAAGGAATCCATCATCTCGAGCG
CGCTCGGAAGATGATAATTCATTTCAATTTCTTTTTTAGGATATCTTAGA
AGTTTCAAAATTGAGGAAAAGGATCATTGCAGAACGTTTGAACTTATTGG
ATGAATTAGAGTACATATTGAGATCACGAAATAAGAGGAAATGAAAATAT
AATGACGTCACCATCAATTTGGAAATTTGTAGTATAGGTACATGTTAAAC
CTCTTGTAGAACGCTTTTGTTGATCTCATTTGTTTACAATTTTATTTTTG
AAGTTCGGTTCCCTCAGATCAATTGAGAAGTGTGGTATACAGTTAACAGT
CTCTAACTCGATCTTCAAGGGACCAAGAAATTTCCTCGAAAGATTCGAAT
TATAGAGACAATTTCACACTGCTTTCCAGGAGGGGCTTATTTTCAGTTCG
AATTACAGAAAGAGTCGAATTATAGAGGTTCGAAATAGAGAAACTTGACT
GTATACAACTTTTTCAATTTCCAATCTTTTATATCCTTCCGAACATTTAC
TCACTACTGACAATCACGTAGATGGACAAACCCGACCCTTAGAACCAATC
CTTTCCCCGAAGTTACGGATCTGCTTTGCCGACTTCCCTTACCTACATTG
TTCTATGGGCCAGAGACTTCTCACCTCGGAGATTTGCTGCGGTTATGAGT
ACGAAGGGACGAGAAAATCTATCTGCCCCCCGACTTTTGATTCACGAACC
ATCTATTATTTGTTCTCCAGATTAATATAACAACTACAACGGTTATATTA
ATAAGTTTGAATTTTTCATTTTTTCGTTGTACGTATATAGCATCAACATC
GCTCCACGGACGAAATGGCCAAGATCCGAAAATTCGAAAAAGAAGAATTC
TCCTCGTGGGAAAAAGAAGACAAGAAGGCCCAACTTTTGTAGAATAATTT
GAAAAAAAACAACAATTATCTTTTAGAAATTAAAAAAAATTGTTTTTGTT
TTTGTTTTTCTTTACACAGTACCATCAAAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004035XLOC_004035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007197-exon-sc0000074-1575043694:474899..475023TCONS_00007197-exon-sc0000074-1575043694:474899..475023Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1575043694:473947..474114TCONS_00007197-exon-sc0000074-1575043694:473947..474114Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1575043694:472737..472884TCONS_00007197-exon-sc0000074-1575043694:472737..472884Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1575043694:471941..472133TCONS_00007197-exon-sc0000074-1575043694:471941..472133Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1510915933:474899..475023TCONS_00007197-exon-sc0000074-1510915933:474899..475023Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1510915933:473947..474114TCONS_00007197-exon-sc0000074-1510915933:473947..474114Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1510915933:472737..472884TCONS_00007197-exon-sc0000074-1510915933:472737..472884Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1510915933:471941..472133TCONS_00007197-exon-sc0000074-1510915933:471941..472133Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1491911889:474899..475023TCONS_00007197-exon-sc0000074-1491911889:474899..475023Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1491911889:473947..474114TCONS_00007197-exon-sc0000074-1491911889:473947..474114Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1491911889:472737..472884TCONS_00007197-exon-sc0000074-1491911889:472737..472884Clytia hemisphaericaexon
TCONS_00007197-exon-sc0000074-1491911889:471941..472133TCONS_00007197-exon-sc0000074-1491911889:471941..472133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:471941..475023 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.083477	0	0	0.0924701	0.112573	0.0889571	230.606	238.266	21.9003	38.0416	13.8807	7.3399	14.4699	13.609	0.142203	0.22442	29.5807	32.9437	35.9216	40.1109	68.5612	66.1492	17.4198	23.3405	24.1093	21.7569	0.114464	0.122159	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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