TCONS_00007186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007186
Unique NameTCONS_00007186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007186 ID=TCONS_00007186|Name=TCONS_00007186|organism=Clytia hemisphaerica|type=transcript|length=1632bp
CCGGACAGCGGACGTTGCTGAGAAGGAAAGATCTTTTATTGgtcattttt
ttttggaaaccaCATTGAGTTTTTAAAAAGGAATACAAACTGATTTGTTT
GATACTTAATCATTTAACACTGATAACGCGCGTTCATTATGTCCACAACA
CGTAGAGCCGTGCTCTTAAGAAATCATAGTCATTCTTTATCACTGTCACC
ACGAGAAACTGATGAATACTTCCCGGAGTTCTTCAAAGTGAAGCCATGGA
ATTCTGAAGAATCATTAGCCGCTTCAACTTTATCACAAGATGGACGAAAC
AAACAGAGCAGCTTGAACAGTAGCACGGCTTCTTTGAAAGCTAGTCCGTT
GATGACCCGCAAAGATAATTTCGACTTTATCATCCCAAAATCACCGACAA
CGTCACGTGTCGGAAGTTACAACAACATCGACGCACCACACGTCGGATCG
ATCGACGTCAAACATTATCTATCAACGGAAGAAGTCCAAGAGTTAGAGGA
AGTTGGTACACAACTCCGTCTTGGTGAAGTCAAATTTTCAATGATGTATA
AAGACACAGACGAGAAGCTCAAATTCATATTGAAATCTGTTTCAGTTTTT
CTCAAACCCAGTCCTTCAGTTGTAGGTTGTAATTGGGTTTGTGAGACAAA
CACAGTGCTCGAGgttttaaattCCAAAAAGAAGCCAATCGAAGTCAGTA
ACGGTCAAGAACTTCTTGTTGATTTCAAAAAGACTGACGTCACTGACCAT
ACATTACGTCTCACCGTTTACGACAATCGACGTAAGCACGTAAAGAACCC
CGTCGGTCACGTGATTTTTCCGTTACGTGATGCAAGAAACCTGGGTAAAA
TGAACAGTTATTCGAAGAAACTAACCTTTTATTCTCAGCCTGCAGGATTT
AACAGAGGAAACGTAAACATCGCACTGTCGTGGGGTATATCAGCTCAAAG
GCTGGATGTGAAAATTGGTGACGTAACAAACTTAAGATGTCCAGCTTATG
GTGTCAACGGAAAAGAATTCTTCATCAAGACGATCGTATTCATATTGGAT
AACAAATACAAGTCATACAAAACACCTCTACAACGCGCCACACCTGAACT
AACATTCAAGGAAAAATTCACTATCCCTCTCACATCTCCACAACTCAAAG
ACTCCACAATTACATTCCAATTATATTTAAAACATTATAATAAAAAGAAG
ATTGGACATAAAGTGTTGGTTGGCAAAACAGTGATTGGACCTTACATGAG
ACATGGGGATCGTTCACTTTCCCAATGGGAAAAAATGATTACTAATCCAT
TGGAAGAGGTATCTGAAcaacacattttatttttatgatgatttCTGTAA
ACGCTGTTAATTGGTAGACACTACTTCGTCTTACATATAGCtgccataaa
aaagtttctccaCAATATTACTGAGGCAGAGGTGTGAGTAACCTCAGAAT
CAAGGAGGAGCTATAGATTTCCTAAATGAGTTCGTTAATATGATAAAACA
ACAAAAGATTAACAAAGAGGTCGCCATTATCACCATTAATTCTATATTAT
ATGTTTAATTATTTTCTAGATGttattgtaaataattttttcaaatgatt
caacttttaagtttcaaatttttgttgaCAAG
Run BLAST on NCBI

transcript from alignment at sc0000074:168364..174036-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007186 ID=TCONS_00007186|Name=TCONS_00007186|organism=Clytia hemisphaerica|type=transcript|length=5673bp|location=Sequence derived from alignment at sc0000074:168364..174036- (Clytia hemisphaerica)
CCGGACAGCGGACGTTGCTGAGAAGGAAAGATCTTTTATTGGTCATTTTT
TTTTGGAAACCACATTGAGTTTTTAAAAAGGAATACAAACTGATTTGTTT
GATACTTAATCATTTAACACTGATAACGCGCGTTCATTATGTCCACAACA
CGTAGAGCCGTGCTCTTAAGAAATCATAGTCATTCTTTATCACTGTCACC
ACGAGAAACTGATGAATACTTCCCGGAGGTAACCAAACTAGTTTAATTTT
GAAAATTTATAGAATTCACTGAAACCTCTCGTATTAATTTCTACTTTGGT
TTGCCGTCGTGATCGAGTTTAAAGTCTCGAAGGACCTAGAGAGGAATCTT
CGACCTTTCACAAGAAAAAAATAAAGCTTTAAGATTTGCAGCACCTTTGA
GATGACGGATTAAATCTAGCGCTTTCTTTGTTTTCACGTGGTAAACCTGG
CGATTTTGTTTTCAATCCGTTGTTCATGTGAAAACCTCGGGGGTCAAGTG
CTCTAGATTGGAAATAAAGGGCTTCATTTCCCATGTATGATTTTCCACTC
TAGTTCCTTTCGGGGTTCTAAACTCAATGCGGAGACACCTGAAAAAGATT
TTGAAAGCCCTTGATAAAAAACAGACAAAGTCGATCGATATCAATTATAA
AGAATGGTAGAACAGAAAACCAGACAGAAAGAATAGATATAGAATTTTGT
TAAAAAAGTGGTTCCTGCAGCTACAAGCTCAAGCTAAAGTATCCATGTAA
CAACCTCAAAAATATTTCAGTCAATAAGAAGAAAGGATTATTAAATAACT
TCACATTAAAATGGATGACACATCATTTTATCTTCTCGGTGACCAAGTTA
AGAAAAGTCCAATAAATACCGTCAAAAAGGTTCTTGTAGTTTTCAAATTT
GTTTTTATGAGAATAAAGAATAAAGCTGGGATGCATAAAACTCGAATCTC
CATATCTTAACTTAATCATATAATCATTACTAGAACGGTTTTTCTGGTTC
TTTGAAATGTCTTAGTGTGCTTGACTGTACCCCGAGCTTTTACGGATAAA
CGATTAGATTACTGGTTACCACTTTGTGTTTGAGCGTACAGTTGTATTAA
CGTTTGTCTTAACTACCCTCTTAGCAGATTTATATGATCTAAATGTTTTT
GCATCAAATTCACAATATCTTTTGGAAAATGTAGCAAGTAGTATCAAAGA
CTTGACACTTATTGAATCCTTTTTTATTTATTTCCTTTCGTAGTTCTTCA
AAGTGAAGCCATGGAATTCTGAAGAATCATTAGCCGCTTCAACTTTATCA
CAAGGTATTTACAACTTTCATATACCAATCTATAGTAAAAACTCATTTAA
CGTATGTAAGTTATTAATGTTACTGGGCACTGAATTCGGACGGCTAAATT
TTGATTATCTACACTCTGACTGACTGAGAACAACAGTAAATCAGCACTTT
TACAGCCCCCGATTTTGCGGATCAGAAAAAACATAGGTTTTCCAATCGTT
TCAGTCACTCCGCCCACTGACCTTTATATACCCTGGACAAAGCTTCTCAA
TCCCAGCCAAGCAAAATCTTTGATCGGAGTTTTTTGAAAATTGGTACCCT
AATGTCGGCACTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTAACATTGCAATGGCTTCTCCTTGGGTA
CCAATTCTAAAAAAACTCCAATCAAAGATGGCAGATATTGTTTGGTCCAG
GGTTATATAAAGGTCAGTGACTCCGCCGTCCTAAAAAGCGCAAATACATA
AACTCACTGACATCTAAATTCTTTGGAGACCTGTATTTTTGGACAAGGAT
TGTACCAGCTCAGCTCACTGGAAGCAAATAGTAGAATCCTACCAACTGAC
TGTCAAAGGGATAAGGAACATTTTTACTTGAATAACGTGTTCGCTTAGAT
GAAAATACTTTTCTTACTACTTCTAGATGGACGAAACAAACAGAGCAGCT
TGAACAGTAGCACGGCTTCTTTGAAAGCTAGTCCGTTGATGACCCGCAAA
GGTACGCTATTATTTCATTACTTTACTAAGTCCTTAAGATGCTTTAGCTA
AGTTGGTCACTGTAGAAAGATAGGATAGAAGGGCTGAGGATAGTGCGTTG
GCTAATGTGACATTAATACTCGTTTTTTCATAAAAACAGATTCTATAAGA
ACATATGGCTACGATGGCCAAAGAAAAATCTAAGAACATTTTAAGGCTTT
TCGATCTCTTAAACATCAATCCCTTAAAAATTGCATAAAATACTCACGAA
TTATTAAAAAATAGGACTACTTTAAGAACATTTTTAAGTTTAAAGCATGA
AAAGTTAAGAAGATCCGATTATACTACTATATTACGTTGTTCCATACTTG
TTTGGGCGTTATGGGTTTTTAACTTTATTAGTTCCAATTGTAAAGAAGAA
ACTGTAATCGTTTCAGATAATTTCGACTTTATCATCCCAAAATCACCGAC
AACGTCACGTGTCGGAAGTTACAACAACATCGACGCACCACACGTCGGAT
CGATCGACGTCAAACATTATCTATCAACGGAAGAAGTCCAAGAGTTAGAG
GTAACTTTTTGCTCGAAAAAGGTCGGGTGGGATTGAAATAATTAATCCCA
CTTTAATGGACGTTCTATGGACGTTGATATAACGTTTTGAGAGAATGGCA
CTTGTATTTAGGAAAAGTATTACACTTTTTTCTTTTATAAGAAAAATTTA
AGAAGAATGCTGATCATGAAAATACTCAATTAAAAATAGGGTACAAAGCC
TGAAATACCTCAATAAGACCCTATAAATAAAAACAGGATAAGAACAATCT
GAAGCTCAAAGTACTAAAAAAGTAAGAACAGCCGAGTCTCTGTAAGTTTA
CTGGTTCTTATAATTAAAGTGTATAGTGAGAGGTATTAGTAGAGAATTTT
TTAAATTCTTTTGTATCTCTTGCCGAACATTATGCAAGATAAATCACAAA
TACGAGACTCTATTATTCGAATCTCTCTGTAATTCGAACAAATAATATTC
CCGACCAAGTTCGAATCAGTGAGAGTCAACTGTACTAGACTTTCAGTTCC
ATGTCTACAAAATATTTCATCTTCCAGGAAGTTGGTACACAACTCCGTCT
TGGTGAAGTCAAATTTTCAATGATGTATAAAGACACAGACGAGAAGCTCA
AATTCATATTGAAATCTGTTTCAGTTTTTCTCAAACCCAGTCCTTCAGTT
GTAGGTTGTAATTGGGTTTGTGAGACAAACACAGTGCTCGAGGTATGACA
TAGTCTTGTAATTTGACATTTAGATTTTCATCATAAATTGCGGTTGATCC
TACTTCTTTTAATTTCAAAACAATTAAAAAAAAAGGTTATTTACGACGTT
TCTGTGTCATCCTACCACTATCAGCATCAGTTATTTCTTTAAATTTTTTT
TTTGAAGTTTATTTTTCATCCCCAAGAAGAAAGTACACTTGTAGATATCG
TATCCAAAGGTTCTAGTCTTTGTTCCTGAATTCAGTGCCTTGAATTTTTA
CATATAATTCGGTTATAACGTCAGATGAACTGGAAAATCGATTGTTTTAG
TGGGAAGCAGACAAACAATTCTCATCCAATTATTACTGGTCAAAGTCATG
AATAAAGCTAAAGGAATCTATGATAACCATCTTTATTAATTTTAAAGGTT
TTAAATTCCAAAAAGAAGCCAATCGAAGTCAGTAACGGTCAAGAACTTCT
TGTTGATTTCAAAAAGACTGACGTCACTGACCATACATTACGTCTCACCG
TTTACGACAATCGACGTAAGCACGTAAAGAACCCCGTCGGTCACGTGATT
TTTCCGTTACGTGATGCAAGAAACCTGGGTAAAATGAACAGTTATTCGAA
GAAACTAACCTTTTATTCTCAGGTGAGTTGACGTAGTTTCTCAAAACTGA
ATTAGGTTTAAAGCAACAGTTTTTNACCTTTTATTCTCAGGTGAGTTGAC
GTAGTTTCTCAAAACTGAATTAAGTTTAAAGCAACAGTTTTTTCAGATCC
AAATTAGGATGCTGTTCCCAAAAACTTCTTAGGACGGATTGTAAGATTTG
ACATCGAATTTGCCTTAAAAACTCTATAGTGATGTCAAAACGCTGGTACT
ACTTATTATTACCTTTCCTTTCCTTTTCTGCTCTGTTCATTTATGCTGTG
GTGGATGTATAAATGGACTTTAATTTCAAAAGGTTGCAAAGAATTTCAGA
GCAGTCCGTTTTACCTTCGACATTTGTCGTGATTTAGGGTTACTATATTA
TTATACATCGTATAAAGGGCTAGGTGTAACTTCATTCTTATTCTTCTCCT
TCGTCTAGCCTGCAGGATTTAACAGAGGAAACGTAAACATCGCACTGTCG
TGGGGTATATCAGCTCAAAGGCTGGATGTGAAAATTGGTGACGTAACAAA
CTTAAGATGTCCAGCTTATGGTGTCAACGGAAAAGGTAGAGACTTATTAA
AGATATTTGTTAAAAGACTTCACTAAAAAGTAATTTTGCGTCAAACTACT
ATGTACTTTCAGGAAGAGATACAAACTGTTCGAACATGCTCGGTGGAAAT
CCTTCCCACAGTGGGGATGAAAATTTCTTTTGAAATCACGATGGGGATAG
AAATTTCATTGTCCCAGGTCAAAAAGGAGTGCAATTTTTTATAGTAAATT
TACAAATATGGATGATGGCCCCGATGATACACTATGATAGTCAATTTCTA
AGCCAGGCTTGTAGAGCATATCTCCCACCAGGGACGAAATTTAGGCCAAA
TTTCTTAGTTGGGCGGGGAGGGGGGTGTTTCCCACCGGGTCTGTGATACG
GGTGTGAAAATTATTTGATTATCTTAACTAACCATTTTATTCTTTACTTT
CTTTAGAATTCTTCATCAAGACGATCGTATTCATATTGGATAACAAATAC
AAGTCATACAAAACACCTCTACAACGCGCCACACCTGAACTAACATTCAA
GGAAAAATTCACTATCCCTCTCACATCTCCACAACTCAAAGACTCCACAA
TTACATTCCAATTATATTTAAAACATTATAATAAAAAGAAGATTGGACAT
AAAGTGTTGGTTGGCAAAACAGTGATTGGACCTTACATGAGACATGGGGA
TCGTTCACTTTCCCAATGGGAAAAAATGATTACTAATCCATTGGAAGAGG
TATCTGAACAACACATTTTATTTTTATGATGATTTCTGTAAACGCTGTTA
ATTGGTAGACACTACTTCGTCTTACATATAGCTGCCATAAAAAAGTTTCT
CCACAATATTACTGAGGCAGAGGTGTGAGTAACCTCAGAATCAAGGAGGA
GCTATAGATTTCCTAAATGAGTTCGTTAATATGATAAAACAACAAAAGAT
TAACAAAGAGGTCGCCATTATCACCATTAATTCTATATTATATGTTTAAT
TATTTTCTAGATGTTATTGTAAATAATTTTTTCAAATGATTCAACTTTTA
AGTTTCAAATTTTTGTTGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004030XLOC_004030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007186-exon-sc0000074-1575043694:173809..174036TCONS_00007186-exon-sc0000074-1575043694:173809..174036Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1575043694:172733..172793TCONS_00007186-exon-sc0000074-1575043694:172733..172793Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1575043694:171836..171910TCONS_00007186-exon-sc0000074-1575043694:171836..171910Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1575043694:171287..171420TCONS_00007186-exon-sc0000074-1575043694:171287..171420Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1575043694:170595..170759TCONS_00007186-exon-sc0000074-1575043694:170595..170759Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1575043694:169965..170189TCONS_00007186-exon-sc0000074-1575043694:169965..170189Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1575043694:169402..169528TCONS_00007186-exon-sc0000074-1575043694:169402..169528Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1575043694:168364..168980TCONS_00007186-exon-sc0000074-1575043694:168364..168980Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1510915933:173809..174036TCONS_00007186-exon-sc0000074-1510915933:173809..174036Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1510915933:172733..172793TCONS_00007186-exon-sc0000074-1510915933:172733..172793Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1510915933:171836..171910TCONS_00007186-exon-sc0000074-1510915933:171836..171910Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1510915933:171287..171420TCONS_00007186-exon-sc0000074-1510915933:171287..171420Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1510915933:170595..170759TCONS_00007186-exon-sc0000074-1510915933:170595..170759Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1510915933:169965..170189TCONS_00007186-exon-sc0000074-1510915933:169965..170189Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1510915933:169402..169528TCONS_00007186-exon-sc0000074-1510915933:169402..169528Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1510915933:168364..168980TCONS_00007186-exon-sc0000074-1510915933:168364..168980Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1491911889:173809..174036TCONS_00007186-exon-sc0000074-1491911889:173809..174036Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1491911889:172733..172793TCONS_00007186-exon-sc0000074-1491911889:172733..172793Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1491911889:171836..171910TCONS_00007186-exon-sc0000074-1491911889:171836..171910Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1491911889:171287..171420TCONS_00007186-exon-sc0000074-1491911889:171287..171420Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1491911889:170595..170759TCONS_00007186-exon-sc0000074-1491911889:170595..170759Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1491911889:169965..170189TCONS_00007186-exon-sc0000074-1491911889:169965..170189Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1491911889:169402..169528TCONS_00007186-exon-sc0000074-1491911889:169402..169528Clytia hemisphaericaexon
TCONS_00007186-exon-sc0000074-1491911889:168364..168980TCONS_00007186-exon-sc0000074-1491911889:168364..168980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:168364..174036 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.9321	1.08269	0.644104	0.576496	0.415066	3.88762	3.2709	1.79615	0	0	0	0.159795	6.83038	7.90938	0	0	0	0.246661	2.30944	2.06043	0.288191	0.295591	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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