TCONS_00007179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007179
Unique NameTCONS_00007179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007179 ID=TCONS_00007179|Name=TCONS_00007179|organism=Clytia hemisphaerica|type=transcript|length=604bp
GAAATATTCAAAAGAAGTAATGAGGAGGTCAATAATTTTATTCCTTTCCA
TTTTATGCACACTTCAATTTTGTCATTGCTTCTCAACAAACAGATTTACT
GAGaTCAAAGCTTGGGAAAGCTTGAGGGAAATTGAACCACCTCCTTTGCA
CGAAAGCGATGAAGATTTCCCGCCTGCACTGCACGCCAAACGCCTTGCAT
CTGCTTTCAGGCCACGCCCCGGGAAAAGATCAAACCTAGAAGAATTGAGA
GATTTAGTTTCCCGTGAGCTTGAAACACTATCTAacttagaaaaagaaaa
tgacaacTTTGCTAGACAAGAAACTCTCCCTCCACAATTTCAATACTATT
GGAGACAAGGAAAGAGAGCAGAGAAACCACGCTACATTGGGATCAGGATG
GGAAAATGAATCAAAAGAAGTTGTGGCTTGCAATTTTATTATTCATTAAA
ACTTCCTATTTTATatttaatgtttaatatttaCACGGTCAAACAATTGA
CTCAAAAATTATTATTCAAGTTGAAAGCATACCCTTTCCACTGATGAAGT
ATTGCACtatgattttatattttatgaaaaaatcacACAGAGACCAATTC
TAAC
Run BLAST on NCBI

protein sequence of TCONS_00007179-protein

>TCONS_00007179-protein ID=TCONS_00007179-protein|Name=TCONS_00007179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
KYSKEVMRRSIILFLSILCTLQFCHCFSTNRFTEIKAWESLREIEPPPLH
ESDEDFPPALHAKRLASAFRPRPGKRSNLEELRDLVSRELETLSNLEKEN
DNFARQETLPPQFQYYWRQGKRAEKPRYIGIRMGK
Run BLAST on NCBI

transcript from alignment at sc0000074:117502..119950-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007179 ID=TCONS_00007179|Name=TCONS_00007179|organism=Clytia hemisphaerica|type=transcript|length=2449bp|location=Sequence derived from alignment at sc0000074:117502..119950- (Clytia hemisphaerica)
GAAATATTCAAAAGAAGTAATGAGGAGGTCAATAATTTTATTCCTTTCCA
TTTTATGCACACTTCAATTTTGTCATTGCTTCTCAACAAACAGATTTACT
GAGGTAAGATATTCGTCCGTTAGTCTGAATCAATCAAGTTTAAACCCGAA
AGGGCCAGAATTGAATCTCCTCAGTAGGATTTGAAGCCTACCAAATCCTA
CAAAAGTTGCGCGGCCAAGCGCGGTCCGCCTGGTTTATACACAAATGACA
GAGATTGGAACTAAAATGTACATCTAAATTTTAAAAATGAATTACTCGAA
AAAAAGGAATTGCTACAATCCTGGCCAAAATATATTGAGAATTTAGCTTA
TTTCCTCGTTTTTCAAAATTTGGAATTCGGGCGAGAAAGTCGTTTTTGGG
CTAATTGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTCTA
ACCTAATTTAGAGCGCTTCCAAAATACTTGTGGTTATAAGATTTCGTGGG
AATTTCCCTTTTGTCTCAAATATTATGGCCAGGATTGTAGATTCAATTCG
TCGTCAAAAATACGGTGCATATTTTAAGGCTTCACTTTTTCTTGCCTGAG
AAAGGTTAAAGATTCGATTCTAGCCCTTCGGGCTTATACTTCATTAGTTT
TAATGTAGCACGTTTGATCGTAGTATAATGGTAGAGTGCTAAGCTACGGT
GCCCATGATTGTTGATTCAATCCCCTGGCCGGGTCATACGAAAGATTTTG
TACTTAGTACAAAATTGGTACTCGAGACATCTCTGCTTGTTGCTTGTTTC
AATTGATGAAAAAGAGTATCAAGGTTGACTGGAACAATTTAGGGATAAAA
AATCGTGCCCTCCCCTACCTTCAGGTGGATAGTTAGAATGGATAGAAATT
GTAAAAGAAACAGCAAAGTGGCCTTTGACAACATTCATGAAATTCCTAAC
ACTCCTTTAAGCGTTGACTATAACCTGAAGTTCAAAATTTATATAAAACA
TTCAAAAGCCATTAATTTGTAAATACCTCAAATTTTCATTTTTTCTAGAT
CAAAGCTTGGGAAAGCTTGAGGGAAATTGAACCACCTCCTTTGCACGAAA
GCGATGAAGATTTCCCGCCTGCACTGCACGCCAAACGCCTTGCATCTGCT
TTCAGGCCACGCCCCGGGAAAAGATCAAACCTAGAAGAATTGAGAGATTT
AGTTTCCCGTGAGCTTGAAACACTATCTAACTTAGAAAAAGAAAATGACA
ACTTTGCTAGACAAGAAACTCTCCCTCCACAATTTCAATACTATTGGAGA
CAAGGAAAGAGAGCAGAGAAACCACGCTACATTGGGATCAGGATGGGAAA
ATGAATCAAAAGAAGTTGTGGCTTGCAATTTTATTATTCATTAAAACTTC
CTATTTTATATTTAATGTTTAATATTTACACGGTCAAACAATTGACTCAA
AAATTATTATTCAAGTTGAAAGCATACCCTTTCCACTGATGAAGTATTGC
ACTATGATTTTATATTTTATGAAAAAATCACACAGAGACCAATTCTAAC

Coding sequence (CDS) from alignment at sc0000074:117502..119950-

>TCONS_00007179 ID=TCONS_00007179|Name=TCONS_00007179|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000074:117502..119950- (Clytia hemisphaerica)
ATCAAAGCTTGGGAAAGCTTGAGGGAAATTGAACCACCTCCTTTGCACGA
AAGCGATGAAGATTTCCCGCCTGCACTGCACGCCAAACGCCTTGCATCTG
CTTTCAGGCCACGCCCCGGGAAAAGATCAAACCTAGAAGAATTGAGAGAT
TTAGTTTCCCGTGAGCTTGAAACACTATCTAACTTAGAAAAAGAAAATGA
CAACTTTGCTAGACAAGAAACTCTCCCTCCACAATTTCAATACTATTGGA
GACAAGGAAAGAGAGCAGAGAAACCACGCTACATTGGGATCAGGATGGGA
AAATGAAAATATTCAAAAGAAGTAATGAGGAGGTCAATAATTTTATTCCT
TTCCATTTTATGCACACTTCAATTTTGTCATTGCTTCTCAACAAACAGAT
TTACTGAGATCAAAGCTTGGGAAAGCTTGAGGGAAATTGAACCACCTCCT
TTGCACGAAAGCGATGAAGATTTCCCGCCTGCACTGCACGCCAAACGCCT
TGCATCTGCTTTCAGGCCACGCCCCGGGAAAAGATCAAACCTAGAAGAAT
TGAGAGATTTAGTTTCCCGTGAGCTTGAAACACTATCTAACTTAGAAAAA
GAAAATGACAACTTTGCTAGACAAGAAACTCTCCCTCCACAATTTCAATA
CTATTGGAGACAAGGAAAGAGAGCAGAGAAACCACGCTACATTGGGATCA
GGATGGGAAAATGAAAATATTCAAAAGAAGTAATGAGGAGGTCAATAATT
TTATTCCTTTCCATTTTATGCACACTTCAATTTTGTCATTGCTTCTCAAC
AAACAGATTTACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004025XLOC_004025Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007179-proteinTCONS_00007179-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007179-exon-sc0000074-1575043694:119848..119950TCONS_00007179-exon-sc0000074-1575043694:119848..119950Clytia hemisphaericaexon
TCONS_00007179-exon-sc0000074-1575043694:117502..118002TCONS_00007179-exon-sc0000074-1575043694:117502..118002Clytia hemisphaericaexon
TCONS_00007179-exon-sc0000074-1510915933:119848..119950TCONS_00007179-exon-sc0000074-1510915933:119848..119950Clytia hemisphaericaexon
TCONS_00007179-exon-sc0000074-1510915933:117502..118002TCONS_00007179-exon-sc0000074-1510915933:117502..118002Clytia hemisphaericaexon
TCONS_00007179-exon-sc0000074-1491911889:119848..119950TCONS_00007179-exon-sc0000074-1491911889:119848..119950Clytia hemisphaericaexon
TCONS_00007179-exon-sc0000074-1491911889:117502..118002TCONS_00007179-exon-sc0000074-1491911889:117502..118002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:117502..119950 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	2.98673	2.35733	0	0	0	0.0691088	12.3166	11.8893	0.868402	0.508292	1.23579	1.68527	2.12152	1.80734	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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