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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007166 ID=TCONS_00007166|Name=TCONS_00007166|organism=Clytia hemisphaerica|type=transcript|length=2123bp
TCGCAGTGTAGAcataataaaaacaacaaaacaatgcGTTCTTTGCTGGC
AGTGCTGTGTTTATCATTCATTGTTTGTGAGGCAGCATCTATTGTCAAAA
AAGATGCTTCTGTTAAGAAAGAAGTTCAACCAGAAGAAGATATAGAACCG
GCCGTTATTTACACCGAAGCTGTTGTGGATGAGAACGGAAATGTTCTCGA
AAAAGACACGATCATCAAAGGTTCTAAAGGACGAATGTTCATCAACAAAG
ATACATACGACAAGGAGACTAGAAAGCGCAGTACCGATACTCTAGTCCAA
GGGTCTGACGGCAAAGCCTCGATTTATAGTACTGACATCAATGGAAAGAA
GGAGCTTGTTTTGGTTGAAGAACCAGACGGTAGCATTGATGCTGTCGACG
AGAAAGAACTTGAAGAGGCTCTGGAAGAGGAGGAGGAAGAGGAAGAAGCA
GGAATGAAAAAGAAACGTGAAAAATCTGGCCCTGGAATCCTTCTAAGAGG
TCCTGGATCACGATTTATGTTCGGTCGAAAGCGTGAAGGCCCTGGAATTC
TTTTACGAGGCCCAGGATCAAGATTCCTGTTCGGTAGAATGGTTGAAGGT
GAAGAGAAAACCAAGAAAGAGGCTGGTCCTGGAATTTTACTTCGTGGTCC
AGGTAGTCGGTTTTTGTTTGGCCGTGAccaaaaggaaaagaaagaaaaat
caaatgaagaatcaagcaaagaaaagaaagaagcaGGACCCGGAATCTTA
CTGAGGGGCCCTGGAAGTCGGTTCTTATTCGGCAGAGATGCAAAAGAGAG
CCAAAAGAAAGAAGCAGGCCCTGGAATTTTGTTACGTGGTCCAGGAAGCC
GTTTTTTATTTGGTCGGGATGCCAGTAAAGACACTACTAATGCTGAATTA
AAAACACTGATCAAAAAAGCTTTATCAGAAGCTAAGGagaaacaatcaaa
atcgaCAACAAAGAAGAGTGAATAGATCTTTTGTACTTATTATATCGTGA
TAATGTGTGAAATTAAGTTTCGAGTACCCATGTCCGTCACCAGGTAGCCC
AAAGTTTTAAGttttttagaaaTACGCTAAGCTCTCCTCGCCAATGGATT
GAAACTGCTCCGTTAAACCTTTattcgaatttgaaaaaaacaaacacatt
TTTTAGAAACTCTAATTGGTATATCAGCagataataaaattttgaataac
gaGCAAATTTTCCTCCAACTGTGGTATTTCACCCCTCCAGTTCAACCCTC
aatcaaaaacttttcttcagGCTTCTGAAATAGGGATGTAAATTTATGTT
GAAGGCAATCGAATTCGTCTCCGGGTAaggttcaaaattttcaatagaac
ttagacagtgaaaaaaaaacaacgtgagaatttaagttttttgaatCGAC
CATGTCTTAATGAAAAGACTAGTATCTGAGTTGATAAAATTTCTAGACTG
GCTCTTTTAAGCTAAAATTCCTATTCCCTACATTATCGGCCTTTAGAACG
CCTGTCCTGGTTAAACGCAAGTCGTTCTCGCACCGGTCTTTATTCCAAAA
CGAGTGAACATAATCAATAAAGACGGGCCGACAAAATTTATGCACACTTA
TTGAGTTCAGAAAGTGtcttattttatttctttgtcaCTTAGTTTCAGAA
ACCCAAGTAAAGGAGAAACTTTTTGTTCCTTTCTACTTCACTGACTATAT
CCAGTAGTGTCACTATATTTAATTATCATCACTACTTAATTTTATGTACA
TaaataaagaattattttaaccaagaaaaattgtatttcatAAGATGTTG
AAAATTCGTGCCGTTGCATATTACCTTACTCAGTTTTAAGAACCCTAAGA
TTGTGGAACTCGAAGCAGGAGAGATTTTCTTCGTCTAGAGAAGGAAATTA
AAGGTCTAACTGAATAAAAACAGCCTTCCAAATCCAAGCAACAACGAATT
TTCTTAAATAGGATGATATTCCAGGTTCTTACTTGCATTTGAGATGAGCG
TGGAAGAGCGGGAAAGAGATACCTTTATAATGAATGTTAACCTAAAATCA
GGTTTATCTCAGTTGGTTTGGCAATACAAGGGTGAATCATGGTACAAGTT
TGAGCCCTAGTGGCTGCTACCGA Run BLAST on NCBI protein sequence of TCONS_00007166-protein >TCONS_00007166-protein ID=TCONS_00007166-protein|Name=TCONS_00007166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
SQCRHNKNNKTMRSLLAVLCLSFIVCEAASIVKKDASVKKEVQPEEDIEP
AVIYTEAVVDENGNVLEKDTIIKGSKGRMFINKDTYDKETRKRSTDTLVQ
GSDGKASIYSTDINGKKELVLVEEPDGSIDAVDEKELEEALEEEEEEEEA
GMKKKREKSGPGILLRGPGSRFMFGRKREGPGILLRGPGSRFLFGRMVEG
EEKTKKEAGPGILLRGPGSRFLFGRDQKEKKEKSNEESSKEKKEAGPGIL
LRGPGSRFLFGRDAKESQKKEAGPGILLRGPGSRFLFGRDASKDTTNAEL
KTLIKKALSEAKEKQSKSTTKKSE Run BLAST on NCBI transcript from alignment at sc0000074:40410..43473- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007166 ID=TCONS_00007166|Name=TCONS_00007166|organism=Clytia hemisphaerica|type=transcript|length=3064bp|location=Sequence derived from alignment at sc0000074:40410..43473- (Clytia hemisphaerica)
TCGCAGTGTAGACATAATAAAAACAACAAAACAATGCGTTCTTTGCTGGC
AGTGCTGTGTTTATCATTCATTGTTTGTGAGGCAGCATCTATTGTCAAAA
AAGGTAACAATTTCTTTTACAACTAAGTAGAAAAACAATCTCACAAAAAT
TCCCAGGATCACTCAAATTTTTAGGATCAGACAATATTTGCTTCTTTACA
AAATCATTGCTCTAAAAGTTATTTACAAAATATTGGAATGCTGGTCATTT
CTGAGCATCAGATGCAATTAGATACTGTGAAAAAGTTAATTATATCTCGA
ACATTTCTTTCGCAGATGCTTCTGTTAAGAAAGAAGTTCAACCAGAAGAA
GATATAGAACCGGCCGTTATTTACACCGAAGCTGTTGTGGATGAGAACGG
AAATGTTCTCGAAAAAGACACGATCATCAAAGGTTCTAAAGGACGAATGT
TCATCAACAAAGATACATACGACAAGGAGACTAGAAAGCGCAGTACCGAT
ACTCTAGTCCAAGGGTCTGACGGCAAAGCCTCGATTTATAGTACTGACAT
CAATGGAAAGAAGGAGCTTGTTTTGGTTGAAGAACCAGACGGTAGCATTG
ATGCTGTCGACGAGAAAGAACTTGAAGAGGCTCTGGAAGAGGAGGAGGAA
GAGGAAGAAGCAGGAATGAAAAAGAAACGTGAAAAATCTGGCCCTGGAAT
CCTTCTAAGAGGTCCTGGATCACGATTTATGTTCGGTCGAAAGCGTGAAG
GCCCTGGAATTCTTTTACGAGGCCCAGGATCAAGATTCCTGTTCGGTAGA
ATGGTTGAAGGTGAAGAGAAAACCAAGAAAGAGGCTGGTCCTGGAATTTT
ACTTCGTGGTCCAGGTAGTCGGTTTTTGTTTGGTCGTGACNTGGTAGAAT
GGTTGAAGGTGAAGATAAAACCAAGAAAGAGGCTGGTCCTGGAATTTTAC
TTCGTGGTCCAGGTAGTCGGTTTTTGTTTGGCCGTGACCAAAAGGAAAAG
AAAGAAAAATCAAATGAAGAATCAAGCAAAGAAAAGAAAGAAGCAGGACC
CGGAATCTTACTGAGGGGCCCTGGAAGTCGGTTCTTATTCGGCAGAGATG
CAAAAGAGAGCCAAAAGAAAGAAGCAGGCCCTGGAATTTTGTTACGTGGT
CCAGGAAGCCGTTTTTTATTTGGTCGGGATGCCAGTAAAGACACTACTAA
TGCTGAATTAAAAACACTGATCAAAAAAGCTTTATCAGAAGCTAAGGAGA
AACAATCAAAATCGACAACAAAGAAGAGTGAATAGATCTTTTGTACTTAT
TATATCGTGATAATGTGTGAAATTAAGTTTCGAGTACCCATGTCCGTCAC
CAGGTAGCCCAAAGTTTTAAGTTTATTAAAGTCTATTCACGATAAGTGTG
CACTCTTTTTTCATTTACCTATAACTTTTGAAGGAATTCTTCAATCTTTA
CAAATTTGGTATCATTGGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTCCAACGATACCAAACTTTTAAAGATTGAAGAAT
TCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAA
CAGACTTTAGAAATACGCTAAGCTCTCCTCGCCAATGGATTGAAACTGCT
CCGTTAAACCTTTATTCGAATTTGAAAAAAACAAACACATTTTTTAGAAA
CTCTAATTGGTATATCAGCAGATAATAAAATTTTGAATAACGAGCAAATT
TTCCTCCAACTGTGGTATTTCACCCCTCCAGTTCAACCCTCAATCAAAAA
CTTTTCTTCAGGCTTCTGAAATAGGGATGTAAATTTATGTTGAAGGCAAT
CGAATTCGTCTCCGGGTAAGGTTCAAAATTTTCAATAGAACTTAGACAGT
GAAAAAAAAACAACGTGAGAATTTAAGTTTTTTGAATCGACCATGTCTTA
ATGAAAAGACTAGTATCTGAGTTGATAAAATTTCTAGACTGGCTCTTTTA
AGCTAAAATTCCTATTCCCTACATTATCGGCCTTTAGAACGCCTGTCCTG
GTTAAACGCAAGTCGTTCTCGCACCGGTCTTTATTCCAAAACGAGTGAAC
ATAATCAATAAAGACGGGCCGACAAAATTTATGCACACTTATTGAGTTCA
GAAAGTGTCTTATTTTATTTCTTTGTCACTTAGTTTCAGAAACCCAAGTA
AAGGAGAAACTTTTTGTTCCTTTCTACTTCACTGACTATATCCAGTAGTG
TCACTATATTTAATTATCATCACTACTTAATTTTATGTACATAAATAAAG
AATTATTTTAACCAAGAAAAATTGTATTTCATAAGATGTTGAAAATTCGT
GCCGTTGCATATTACCTTACTCAGTTTTAAGAACCCTAAGATTGTGGAAC
TCGAAGCAGGAGAGATTTTCTTCGTCTAGAGAAGGAAATTAAAGGTCTAA
CTGAATAAAAACAGCCTTCCAAATCCAAGCAACAACGAATTTTCTTAAAT
AGGATGATATTCCAGGTTCTTACTTGCATTTGAGATGAGCGTGGAAGAGC
GGGAAAGAGATACCTTTATAATGAATGTTAACCTAAAATCAGGTTTATCT
CAGTTGGTTTGGCAATACAAGGGTGAATCATGGTACAAGTTTGAGCCCTA
GTGGCTGCTACCGA Coding sequence (CDS) from alignment at sc0000074:40410..43473- >TCONS_00007166 ID=TCONS_00007166|Name=TCONS_00007166|organism=Clytia hemisphaerica|type=CDS|length=2925bp|location=Sequence derived from alignment at sc0000074:40410..43473- (Clytia hemisphaerica)
GCTGGTCCTGGAATTTTACTTCGTGGTCCAGGTAGTCGGTTTTTGTTTGG
CCGTGACCAAAAGGAAAAGAAAGAAAAATCAAATGAAGAATCAAGCAAAG
AAAAGAAAGAAGCAGGACCCGGAATCTTACTGAGGGGCCCTGGAAGTCGG
TTCTTATTCGGCAGAGATGCAAAAGAGAGCCAAAAGAAAGAAGCAGGCCC
TGGAATTTTGTTACGTGGTCCAGGAAGCCGTTTTTTATTTGGTCGGGATG
CCAGTAAAGACACTACTAATGCTGAATTAAAAACACTGATCAAAAAAGCT
TTATCAGAAGCTAAGGAGAAACAATCAAAATCGACAACAAAGAAGAGTGA
ATAGATGCTTCTGTTAAGAAAGAAGTTCAACCAGAAGAAGATATAGAACC
GGCCGTTATTTACACCGAAGCTGTTGTGGATGAGAACGGAAATGTTCTCG
AAAAAGACACGATCATCAAAGGTTCTAAAGGACGAATGTTCATCAACAAA
GATACATACGACAAGGAGACTAGAAAGCGCAGTACCGATACTCTAGTCCA
AGGGTCTGACGGCAAAGCCTCGATTTATAGTACTGACATCAATGGAAAGA
AGGAGCTTGTTTTGGTTGAAGAACCAGACGGTAGCATTGATGCTGTCGAC
GAGAAAGAACTTGAAGAGGCTCTGGAAGAGGAGGAGGAAGAGGAAGAAGC
AGGAATGAAAAAGAAACGTGAAAAATCTGGCCCTGGAATCCTTCTAAGAG
GTCCTGGATCACGATTTATGTTCGGTCGAAAGCGTGAAGGCCCTGGAATT
CTTTTACGAGGCCCAGGATCAAGATTCCTGTTCGGTAGAATGGTTGAAGG
TGAAGAGAAAACCAAGAAAGAGTCGCAGTGTAGACATAATAAAAACAACA
AAACAATGCGTTCTTTGCTGGCAGTGCTGTGTTTATCATTCATTGTTTGT
GAGGCAGCATCTATTGTCAAAAAAGGCTGGTCCTGGAATTTTACTTCGTG
GTCCAGGTAGTCGGTTTTTGTTTGGCCGTGACCAAAAGGAAAAGAAAGAA
AAATCAAATGAAGAATCAAGCAAAGAAAAGAAAGAAGCAGGACCCGGAAT
CTTACTGAGGGGCCCTGGAAGTCGGTTCTTATTCGGCAGAGATGCAAAAG
AGAGCCAAAAGAAAGAAGCAGGCCCTGGAATTTTGTTACGTGGTCCAGGA
AGCCGTTTTTTATTTGGTCGGGATGCCAGTAAAGACACTACTAATGCTGA
ATTAAAAACACTGATCAAAAAAGCTTTATCAGAAGCTAAGGAGAAACAAT
CAAAATCGACAACAAAGAAGAGTGAATAGATGCTTCTGTTAAGAAAGAAG
TTCAACCAGAAGAAGATATAGAACCGGCCGTTATTTACACCGAAGCTGTT
GTGGATGAGAACGGAAATGTTCTCGAAAAAGACACGATCATCAAAGGTTC
TAAAGGACGAATGTTCATCAACAAAGATACATACGACAAGGAGACTAGAA
AGCGCAGTACCGATACTCTAGTCCAAGGGTCTGACGGCAAAGCCTCGATT
TATAGTACTGACATCAATGGAAAGAAGGAGCTTGTTTTGGTTGAAGAACC
AGACGGTAGCATTGATGCTGTCGACGAGAAAGAACTTGAAGAGGCTCTGG
AAGAGGAGGAGGAAGAGGAAGAAGCAGGAATGAAAAAGAAACGTGAAAAA
TCTGGCCCTGGAATCCTTCTAAGAGGTCCTGGATCACGATTTATGTTCGG
TCGAAAGCGTGAAGGCCCTGGAATTCTTTTACGAGGCCCAGGATCAAGAT
TCCTGTTCGGTAGAATGGTTGAAGGTGAAGAGAAAACCAAGAAAGAGTCG
CAGTGTAGACATAATAAAAACAACAAAACAATGCGTTCTTTGCTGGCAGT
GCTGTGTTTATCATTCATTGTTTGTGAGGCAGCATCTATTGTCAAAAAAG
GCTGGTCCTGGAATTTTACTTCGTGGTCCAGGTAGTCGGTTTTTGTTTGG
CCGTGACCAAAAGGAAAAGAAAGAAAAATCAAATGAAGAATCAAGCAAAG
AAAAGAAAGAAGCAGGACCCGGAATCTTACTGAGGGGCCCTGGAAGTCGG
TTCTTATTCGGCAGAGATGCAAAAGAGAGCCAAAAGAAAGAAGCAGGCCC
TGGAATTTTGTTACGTGGTCCAGGAAGCCGTTTTTTATTTGGTCGGGATG
CCAGTAAAGACACTACTAATGCTGAATTAAAAACACTGATCAAAAAAGCT
TTATCAGAAGCTAAGGAGAAACAATCAAAATCGACAACAAAGAAGAGTGA
ATAGATGCTTCTGTTAAGAAAGAAGTTCAACCAGAAGAAGATATAGAACC
GGCCGTTATTTACACCGAAGCTGTTGTGGATGAGAACGGAAATGTTCTCG
AAAAAGACACGATCATCAAAGGTTCTAAAGGACGAATGTTCATCAACAAA
GATACATACGACAAGGAGACTAGAAAGCGCAGTACCGATACTCTAGTCCA
AGGGTCTGACGGCAAAGCCTCGATTTATAGTACTGACATCAATGGAAAGA
AGGAGCTTGTTTTGGTTGAAGAACCAGACGGTAGCATTGATGCTGTCGAC
GAGAAAGAACTTGAAGAGGCTCTGGAAGAGGAGGAGGAAGAGGAAGAAGC
AGGAATGAAAAAGAAACGTGAAAAATCTGGCCCTGGAATCCTTCTAAGAG
GTCCTGGATCACGATTTATGTTCGGTCGAAAGCGTGAAGGCCCTGGAATT
CTTTTACGAGGCCCAGGATCAAGATTCCTGTTCGGTAGAATGGTTGAAGG
TGAAGAGAAAACCAAGAAAGAGTCGCAGTGTAGACATAATAAAAACAACA
AAACAATGCGTTCTTTGCTGGCAGTGCTGTGTTTATCATTCATTGTTTGT
GAGGCAGCATCTATTGTCAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007166-exon-sc0000074-1575043694:43371..43473 | TCONS_00007166-exon-sc0000074-1575043694:43371..43473 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1575043694:42641..43158 | TCONS_00007166-exon-sc0000074-1575043694:42641..43158 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1575043694:42100..42542 | TCONS_00007166-exon-sc0000074-1575043694:42100..42542 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1575043694:40410..41468 | TCONS_00007166-exon-sc0000074-1575043694:40410..41468 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1510915933:43371..43473 | TCONS_00007166-exon-sc0000074-1510915933:43371..43473 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1510915933:42641..43158 | TCONS_00007166-exon-sc0000074-1510915933:42641..43158 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1510915933:42100..42542 | TCONS_00007166-exon-sc0000074-1510915933:42100..42542 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1510915933:40410..41468 | TCONS_00007166-exon-sc0000074-1510915933:40410..41468 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1491911889:43371..43473 | TCONS_00007166-exon-sc0000074-1491911889:43371..43473 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1491911889:42641..43158 | TCONS_00007166-exon-sc0000074-1491911889:42641..43158 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1491911889:42100..42542 | TCONS_00007166-exon-sc0000074-1491911889:42100..42542 | Clytia hemisphaerica | exon |
| TCONS_00007166-exon-sc0000074-1491911889:40410..41468 | TCONS_00007166-exon-sc0000074-1491911889:40410..41468 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:40410..43473 - |
Blast
The following BLAST results are available for this feature:
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