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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007165 ID=TCONS_00007165|Name=TCONS_00007165|organism=Clytia hemisphaerica|type=transcript|length=3158bpRun BLAST on NCBI protein sequence of TCONS_00007165-protein >TCONS_00007165-protein ID=TCONS_00007165-protein|Name=TCONS_00007165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp MAQLSSLAPYGCYNAPTPLSYPHQFAPSPLTPTPPATPDCGLLSPISSNNRun BLAST on NCBI transcript from alignment at sc0000074:30861..38939- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007165 ID=TCONS_00007165|Name=TCONS_00007165|organism=Clytia hemisphaerica|type=transcript|length=8079bp|location=Sequence derived from alignment at sc0000074:30861..38939- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000074:30861..38939- >TCONS_00007165 ID=TCONS_00007165|Name=TCONS_00007165|organism=Clytia hemisphaerica|type=CDS|length=13530bp|location=Sequence derived from alignment at sc0000074:30861..38939- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007165 vs. Swiss-Prot (Human)
Match: CPEB1 (Cytoplasmic polyadenylation element-binding protein 1 OS=Homo sapiens GN=CPEB1 PE=1 SV=1) HSP 1 Score: 405.216 bits (1040), Expect = 4.248e-128 Identity = 193/287 (67.25%), Postives = 227/287 (79.09%), Query Frame = 1
Query: 1279 MELERRAQMQITS-NDPTYTWSGQLPARNYKNPIYSNKIFLGGVPWDITEAGLQQAFRPFGPVKVEWPIKEVKSDRNTPKG---RGYCYLLFENEKSVKALLANCTHD-FSSGG--DWYFKISSRRMRCKEVQVIPWVLTDSNFVRISSQKLDPNRTIFVGGLHGMMNAESLCQIMNDLFDNVIYAGIDTDKHKYPIGSGRVTFSSHRSFMKAVQAAFIEIRTTKFTKKVQIDPYLEDSMCSTCHINPGPFFCRDPICFKYFCHSCWNWHHSLDQLRVHKPMTRHSK 2118
+E E R Q + N+ T TWSGQLP RNYKNPIYS K+FLGGVPWDITEAGL FR FG + VEWP K+ K R PKG +GY YL+FE EKSV++LL C+HD S G ++YFK+SSRRMRCKEVQVIPWVL DSNFVR SQ+LDP+RT+FVG LHGM+NAE+L I+NDLF V+YAGIDTDKHKYPIGSGRVTF++ RS++KAV AAF+EI+TTKFTKKVQIDPYLEDS+C C PGPFFCRD +CFKYFC SCW+W HS++ LR H P+ R+ K
Sbjct: 275 IEREARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGNMPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQK 561 The following BLAST results are available for this feature:
BLAST of TCONS_00007165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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