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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007164 ID=TCONS_00007164|Name=TCONS_00007164|organism=Clytia hemisphaerica|type=transcript|length=1417bp
tagaagtaaaaaaaagtgaattttaaacAGTAGACATGTCTACGTACATT
TCCATAGCAAATGCTATTAAAGAGATTGAGTATTGGCTTCGATTAGCCAC
TTTACTGCATGAACCACTAAAAGAATCGCTGCTCAACATCCTTCATAATT
ACTACAATCGAACCGACTATGTTGGTCTCCCATCCAACCCTAACCTTCTC
AACGCTGAGCTACGAAAACACcaacaaacaatcaaaaaatTACAAACTAA
AGGAGTTCTTAACAAGGACCAAGTTGAACTTTTACTGCCAACCGGAACTA
CACAAACCGATAGCTCAACCTTTGATGTTACTTTAATCATATTTTTGATT
ATCGAGTTCGCAAACCTTCCTCCGCCGAGCAGAGGTTGGAAAAAAGATCC
ATTATGTACCGATACAAGTTTAGCGGCTTTCGTTGTACGTGCTCGCAAAT
GGAGAAATGACTTACTACACGATGATCCAAAAAGTATCACTTTGAACGAT
TTCAATAAACGGTGGACTGAAGGCGTTAATATAATTCATGGTCTGTTTTT
TGTCACTTACGATACAAATAGACTGAAAACTATGCCTTTGGATGTACACA
ACAGAACTGtatttaaatctttaaaatttctaTCCAAAAAGATTACCGGG
AAGCAAACCGCTCATGACAACCAGCTTGCCTCCCATGACAATAAACTCAC
CGCCCATGACAACCAACTTACCACCCAAGACAATAAACTCACCGCCCATG
ACAACCAACTTACCACCCAAGACAATAAACTGACCGCCCATGACAACCAA
CTAACCACCCAAGACAATAAACTCACCGCCCATAACAAACAACTTACCAC
CCAAGACAATAAACTCACCGCCCATGACAACCAACTTACCACCCAAGACA
ATAAACTCACCGCCCATGACAACCATTTTACTGCCCATCACAGTCAACTC
AATGTGTTAACCGAGAGACTTTCAGAAGATGAGTCGAAGTTCGTTGAAAT
GGTGGACCGTCTGGAGAAGGAACTAAATTTCATCAAAGATAATCTTAAGG
GAAATCAGATCAACGaacGTCAGAAATTGGGATCCAAGGAGATCAGGCTT
GAAAGAAACCTCTACAAAGACGTTCAAATCACTTTGAATGTCAAAAACTT
GAACATTGCTATTATCACTGCTATTGATGTCGGCAAAGAAATCGACGAAA
AAACTGAAATCGTATATGAAGGATTACAACAAAACGAATACTTGACCAGA
CCATTGAATGATAGGCTGTTAGTGCAGATTCGTAAGGAGATGGCGTCGGG
GTTCGTTCATTCtattaaaatgaaaacattgcaAATTGATGGCACCAATG
AAGAGTTTGTTGTTAATGTCAAAGGAAGAGGTAGGCTTTATACTTTATCA
AAAAGTATCGTTATACA Run BLAST on NCBI protein sequence of TCONS_00007164-protein >TCONS_00007164-protein ID=TCONS_00007164-protein|Name=TCONS_00007164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
MSTYISIANAIKEIEYWLRLATLLHEPLKESLLNILHNYYNRTDYVGLPS
NPNLLNAELRKHQQTIKKLQTKGVLNKDQVELLLPTGTTQTDSSTFDVTL
IIFLIIEFANLPPPSRGWKKDPLCTDTSLAAFVVRARKWRNDLLHDDPKS
ITLNDFNKRWTEGVNIIHGLFFVTYDTNRLKTMPLDVHNRTVFKSLKFLS
KKITGKQTAHDNQLASHDNKLTAHDNQLTTQDNKLTAHDNQLTTQDNKLT
AHDNQLTTQDNKLTAHNKQLTTQDNKLTAHDNQLTTQDNKLTAHDNHFTA
HHSQLNVLTERLSEDESKFVEMVDRLEKELNFIKDNLKGNQINERQKLGS
KEIRLERNLYKDVQITLNVKNLNIAIITAIDVGKEIDEKTEIVYEGLQQN
EYLTRPLNDRLLVQIRKEMASGFVHSIKMKTLQIDGTNEEFVVNVKGRGR
LYTLSKSIVI Run BLAST on NCBI transcript from alignment at sc0000074:731478..734053+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007164 ID=TCONS_00007164|Name=TCONS_00007164|organism=Clytia hemisphaerica|type=transcript|length=2576bp|location=Sequence derived from alignment at sc0000074:731478..734053+ (Clytia hemisphaerica)
tagaagtaaaaaaaagtgaattttaaacAGTAGACATGTCTACGTACATT
TCCATAGCAAATGCTATTAAAGAGATTGAGTATTGGCTTCGATTAGCCAC
TTTACTGCATGAACCACTAAAAGAATCGCTGCTCAACATCCTTCATAATT
ACTACAATCGAACCGACTATGTTGGTCTCCCATCCAACCCTAACCTTCTC
AACGCTGAGCTACGAAAACACcaacaaacaatcaaaaaatTACAAACTAA
AGGAGTTCTTAACAAGGACCAAGTTGAACTTTTACTGCCAACCGGAACTA
CACAAACCGATAGCTCAACCTTTGATGTTACTTTAATCATATTTTTGATT
ATCGAGTTCGCAAACCTTCCTCCGCCGAGCAGAGGTTGGAAAAAAGATCC
ATTATGTACCGATACAAGTTTAGCGGCTTTCGTTGTACGTGCTCGCAAAT
GGAGAAATGACTTACTACACGATGATCCAAAAAGTATCACTTTGAACGAT
TTCAATAAACGGTGGACTGAAGGCGTTAATATAATTCATGGTCTGTTTTT
TGTCACTTACGATACAAATAGACTGAAAACTATGCCTTTGGATGTACACA
ACAGAACTGtatttaaatctttaaaatttctaTCCAAAAAGATTACCGGG
AAGCAAACCGCTCATGACAACCAGCTTGCCTCCCATGACAATAAACTCAC
CGCCCATGACAACCAACTTACCACCCAAGACAATAAACTCACCGCCCATG
ACAACCAACTTACCACCCAAGACAATAAACTGACCGCCCATGACAACCAA
CTAACCACCCAAGACAATAAACTCACCGCCCATAACAAACAACTTACCAC
CCAAGACAATAAACTCACCGCCCATGACAACCAACTTACCACCCAAGACA
ATAAACTCACCGCCCATGACAACCATTTTACTGCCCATCACAGTCAACTC
AATGTGTTAACCGAGAGACTTTCAGAAGATGAGTCGAAGTTCGTTGAAAT
GGTGGACCGTCTGGAGAAGGAACTAAATTTCATCAAAGATAATCTTAAGG
GAAATCAGATCAACGGTATGTTGAAGTTCCTTAGATTTGTCAAACTATTC
tcacaaaaattttgaatataaaagAATTATACCGTTATGTGGTACGGGTT
GAACTACAATCAgcaccgaaatatattggcaattttgggttttttaacgt
atttcagaatttaaaggtcgggcgagaattgcagtttcagtaatTCCACT
TTggttcattggatttttcgatttgtgAGGGGTTTAATGGctttcaggct
atattctcagccttattagaatatttttgagcttttagatcctgagatcc
taaggtccttaagtcttaagtcttatgttaaaactcagatttaaaactct
acttccaaaatgaacttcaaaagcacttaaaaatcacttgtggtttcaaa
gttttgagggaattccccttttgagccaaatatttcggcgctgattgtag
tTGTGTAAAGTCATTTGTTAAATTCAATTCAGgccagtgaaagcatagca
aaattgatttGTTATGAGGTGTTCTAAGGTCTGGTTAACCCTAACGGTTA
GGGTTCAGTAGGCCTGACAAGtgaatttgagtcaccgcgtttggcttgac
agggtaaacgcagtgaaagcatagcaaaaatgagtggttaggagGTGTTC
TAAGGCTTAGCTAGGGTTTAGAAGGTCTGACAAGtgaatttgagtcaccg
cgtttggcttggtagggtaaacgcagtgaaagcatagcaaaaatgagtgg
ttatgaggtgttctaaggcctggctagggtTTAGAAGGCCTGACAAATGA
ATTTGAGTCACCAGATATAGAAAAACTTTAAGTGGTCATTATTTTTATCG
GAGGGGGGGGGCGGTCCCCGTTTTCCCCTTGTATCAAAGACCTGACGAAG
TAAATTTATGCCtctgtatttttttcatttagaacGTCAGAAATTGGGAT
CCAAGGAGATCAGGTAACTTTTCGCCAGAAATTCACCGGTAAAAATTGTC
GAAAGGATCACTTAGTTACTAACCTTTTTTTACTCATGAATATTCATTCC
GACGAAGATTTTTGGCCGACTGACGTTTGTGAGCAAGGGCTATCAGAGGG
ACAATTTGGCCTTGACAGTTTGTATTATATCTTGGCTTTATTGTGTAGTT
TAATGCTTCGGTTGTTTTCAGTTAGTTTTTAAAATGgatgaattttattt
tgcagGCTTGAAAGAAACCTCTACAAAGACGTTCAAATCACTTTGAATGT
CAAAAACTTGAACATTGCTATTATCACTGCTATTGATGTCGGCAAAGAAA
TCGACGAAAAAACTGAAATCGTATATGAAGGATTACAACAAAACGAATAC
TTGACCAGACCATTGAATGATAGGCTGTTAGTGCAGATTCGTAAGGAGAT
GGCGTCGGGGTTCGTTCATTCtattaaaatgaaaacattgcaAATTGATG
GCACCAATGAAGAGTTTGTTGTTAATGTCAAAGGAAGAGGTAGGCTTTAT
ACTTTATCAAAAAGTATCGTTATACA Coding sequence (CDS) from alignment at sc0000074:731478..734053+ >TCONS_00007164 ID=TCONS_00007164|Name=TCONS_00007164|organism=Clytia hemisphaerica|type=CDS|length=4140bp|location=Sequence derived from alignment at sc0000074:731478..734053+ (Clytia hemisphaerica)
ATGTCTACGTACATTTCCATAGCAAATGCTATTAAAGAGATTGAGTATTG
GCTTCGATTAGCCACTTTACTGCATGAACCACTAAAAGAATCGCTGCTCA
ACATCCTTCATAATTACTACAATCGAACCGACTATGTTGGTCTCCCATCC
AACCCTAACCTTCTCAACGCTGAGCTACGAAAACACcaacaaacaatcaa
aaaatTACAAACTAAAGGAGTTCTTAACAAGGACCAAGTTGAACTTTTAC
TGCCAACCGGAACTACACAAACCGATAGCTCAACCTTTGATGTTACTTTA
ATCATATTTTTGATTATCGAGTTCGCAAACCTTCCTCCGCCGAGCAGAGG
TTGGAAAAAAGATCCATTATGTACCGATACAAGTTTAGCGGCTTTCGTTG
TACGTGCTCGCAAATGGAGAAATGACTTACTACACGATGATCCAAAAAGT
ATCACTTTGAACGATTTCAATAAACGGTGGACTGAAGGCGTTAATATAAT
TCATGGTCTGTTTTTTGTCACTTACGATACAAATAGACTGAAAACTATGC
CTTTGGATGTACACAACAGAACTGtatttaaatctttaaaatttctaTCC
AAAAAGATTACCGGGAAGCAAACCGCTCATGACAACCAGCTTGCCTCCCA
TGACAATAAACTCACCGCCCATGACAACCAACTTACCACCCAAGACAATA
AACTCACCGCCCATGACAACCAACTTACCACCCAAGACAATAAACTGACC
GCCCATGACAACCAACTAACCACCCAAGACAATAAACTCACCGCCCATAA
CAAACAACTTACCACCCAAGACAATAAACTCACCGCCCATGACAACCAAC
TTACCACCCAAGACAATAAACTCACCGCCCATGACAACCATTTTACTGCC
CATCACAGTCAACTCAATGTGTTAACCGAGAGACTTTCAGAAGATGAGTC
GAAGTTCGTTGAAATGGTGGACCGTCTGGAGAAGGAACTAAATTTCATCA
AAGATAATCTTAAGGGAAATCAGATCAACGaacGTCAGAAATTGGGATCC
AAGGAGATCAGGCTTGAAAGAAACCTCTACAAAGACGTTCAAATCACTTT
GAATGTCAAAAACTTGAACATTGCTATTATCACTGCTATTGATGTCGGCA
AAGAAATCGACGAAAAAACTGAAATCGTATATGAAGGATTACAACAAAAC
GAATACTTGACCAGACCATTGAATGATAGGCTGTTAGTGCAGATTCGTAA
GGAGATGGCGTCGGGGTTCGTTCATTCtattaaaatgaaaacattgcaAA
TTGATGGCACCAATGAAGAGTTTGTTGTTAATGTCAAAGGAAGAGGTAGG
CTTTATACTTTATCAAAAAGTATCGTTATAATGTCTACGTACATTTCCAT
AGCAAATGCTATTAAAGAGATTGAGTATTGGCTTCGATTAGCCACTTTAC
TGCATGAACCACTAAAAGAATCGCTGCTCAACATCCTTCATAATTACTAC
AATCGAACCGACTATGTTGGTCTCCCATCCAACCCTAACCTTCTCAACGC
TGAGCTACGAAAACACcaacaaacaatcaaaaaatTACAAACTAAAGGAG
TTCTTAACAAGGACCAAGTTGAACTTTTACTGCCAACCGGAACTACACAA
ACCGATAGCTCAACCTTTGATGTTACTTTAATCATATTTTTGATTATCGA
GTTCGCAAACCTTCCTCCGCCGAGCAGAGGTTGGAAAAAAGATCCATTAT
GTACCGATACAAGTTTAGCGGCTTTCGTTGTACGTGCTCGCAAATGGAGA
AATGACTTACTACACGATGATCCAAAAAGTATCACTTTGAACGATTTCAA
TAAACGGTGGACTGAAGGCGTTAATATAATTCATGGTCTGTTTTTTGTCA
CTTACGATACAAATAGACTGAAAACTATGCCTTTGGATGTACACAACAGA
ACTGtatttaaatctttaaaatttctaTCCAAAAAGATTACCGGGAAGCA
AACCGCTCATGACAACCAGCTTGCCTCCCATGACAATAAACTCACCGCCC
ATGACAACCAACTTACCACCCAAGACAATAAACTCACCGCCCATGACAAC
CAACTTACCACCCAAGACAATAAACTGACCGCCCATGACAACCAACTAAC
CACCCAAGACAATAAACTCACCGCCCATAACAAACAACTTACCACCCAAG
ACAATAAACTCACCGCCCATGACAACCAACTTACCACCCAAGACAATAAA
CTCACCGCCCATGACAACCATTTTACTGCCCATCACAGTCAACTCAATGT
GTTAACCGAGAGACTTTCAGAAGATGAGTCGAAGTTCGTTGAAATGGTGG
ACCGTCTGGAGAAGGAACTAAATTTCATCAAAGATAATCTTAAGGGAAAT
CAGATCAACGaacGTCAGAAATTGGGATCCAAGGAGATCAGGCTTGAAAG
AAACCTCTACAAAGACGTTCAAATCACTTTGAATGTCAAAAACTTGAACA
TTGCTATTATCACTGCTATTGATGTCGGCAAAGAAATCGACGAAAAAACT
GAAATCGTATATGAAGGATTACAACAAAACGAATACTTGACCAGACCATT
GAATGATAGGCTGTTAGTGCAGATTCGTAAGGAGATGGCGTCGGGGTTCG
TTCATTCtattaaaatgaaaacattgcaAATTGATGGCACCAATGAAGAG
TTTGTTGTTAATGTCAAAGGAAGAGGTAGGCTTTATACTTTATCAAAAAG
TATCGTTATAATGTCTACGTACATTTCCATAGCAAATGCTATTAAAGAGA
TTGAGTATTGGCTTCGATTAGCCACTTTACTGCATGAACCACTAAAAGAA
TCGCTGCTCAACATCCTTCATAATTACTACAATCGAACCGACTATGTTGG
TCTCCCATCCAACCCTAACCTTCTCAACGCTGAGCTACGAAAACACcaac
aaacaatcaaaaaatTACAAACTAAAGGAGTTCTTAACAAGGACCAAGTT
GAACTTTTACTGCCAACCGGAACTACACAAACCGATAGCTCAACCTTTGA
TGTTACTTTAATCATATTTTTGATTATCGAGTTCGCAAACCTTCCTCCGC
CGAGCAGAGGTTGGAAAAAAGATCCATTATGTACCGATACAAGTTTAGCG
GCTTTCGTTGTACGTGCTCGCAAATGGAGAAATGACTTACTACACGATGA
TCCAAAAAGTATCACTTTGAACGATTTCAATAAACGGTGGACTGAAGGCG
TTAATATAATTCATGGTCTGTTTTTTGTCACTTACGATACAAATAGACTG
AAAACTATGCCTTTGGATGTACACAACAGAACTGtatttaaatctttaaa
atttctaTCCAAAAAGATTACCGGGAAGCAAACCGCTCATGACAACCAGC
TTGCCTCCCATGACAATAAACTCACCGCCCATGACAACCAACTTACCACC
CAAGACAATAAACTCACCGCCCATGACAACCAACTTACCACCCAAGACAA
TAAACTGACCGCCCATGACAACCAACTAACCACCCAAGACAATAAACTCA
CCGCCCATAACAAACAACTTACCACCCAAGACAATAAACTCACCGCCCAT
GACAACCAACTTACCACCCAAGACAATAAACTCACCGCCCATGACAACCA
TTTTACTGCCCATCACAGTCAACTCAATGTGTTAACCGAGAGACTTTCAG
AAGATGAGTCGAAGTTCGTTGAAATGGTGGACCGTCTGGAGAAGGAACTA
AATTTCATCAAAGATAATCTTAAGGGAAATCAGATCAACGaacGTCAGAA
ATTGGGATCCAAGGAGATCAGGCTTGAAAGAAACCTCTACAAAGACGTTC
AAATCACTTTGAATGTCAAAAACTTGAACATTGCTATTATCACTGCTATT
GATGTCGGCAAAGAAATCGACGAAAAAACTGAAATCGTATATGAAGGATT
ACAACAAAACGAATACTTGACCAGACCATTGAATGATAGGCTGTTAGTGC
AGATTCGTAAGGAGATGGCGTCGGGGTTCGTTCATTCtattaaaatgaaa
acattgcaAATTGATGGCACCAATGAAGAGTTTGTTGTTAATGTCAAAGG
AAGAGGTAGGCTTTATACTTTATCAAAAAGTATCGTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007164-exon-sc0000074-1491911889:731478..732542 | TCONS_00007164-exon-sc0000074-1491911889:731478..732542 | Clytia hemisphaerica | exon |
| TCONS_00007164-exon-sc0000074-1510915933:731478..732542 | TCONS_00007164-exon-sc0000074-1510915933:731478..732542 | Clytia hemisphaerica | exon |
| TCONS_00007164-exon-sc0000074-1575043694:731478..732542 | TCONS_00007164-exon-sc0000074-1575043694:731478..732542 | Clytia hemisphaerica | exon |
| TCONS_00007164-exon-sc0000074-1491911889:733460..733490 | TCONS_00007164-exon-sc0000074-1491911889:733460..733490 | Clytia hemisphaerica | exon |
| TCONS_00007164-exon-sc0000074-1510915933:733460..733490 | TCONS_00007164-exon-sc0000074-1510915933:733460..733490 | Clytia hemisphaerica | exon |
| TCONS_00007164-exon-sc0000074-1575043694:733460..733490 | TCONS_00007164-exon-sc0000074-1575043694:733460..733490 | Clytia hemisphaerica | exon |
| TCONS_00007164-exon-sc0000074-1491911889:733733..734053 | TCONS_00007164-exon-sc0000074-1491911889:733733..734053 | Clytia hemisphaerica | exon |
| TCONS_00007164-exon-sc0000074-1510915933:733733..734053 | TCONS_00007164-exon-sc0000074-1510915933:733733..734053 | Clytia hemisphaerica | exon |
| TCONS_00007164-exon-sc0000074-1575043694:733733..734053 | TCONS_00007164-exon-sc0000074-1575043694:733733..734053 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:731478..734053 + |
Blast
The following BLAST results are available for this feature:
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