TCONS_00007160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007160
Unique NameTCONS_00007160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007160 ID=TCONS_00007160|Name=TCONS_00007160|organism=Clytia hemisphaerica|type=transcript|length=345bp
tagttttgatgGTACTgtgtaaagaaaaacaaaaacaaaaacaatttttt
ttaatttctaaaagataattgttgttttttttcaaattattctaCAAAAG
TTGGGCCTTCTTGTCTTCTTTTTCCCACGAGGAGAATTcttctttttcga
attttcggATCTTGGCCATTTCGTCCGTGGAGCGATGTTGATGCTATCTA
TACTACAAATTTCCAAATTGATGGTGACGTCATTATATTTTCATTTCCTC
TTATTTCGTGATCTCAATATGTACTCTAATTCATCCAATAAGTTCAAACG
TTCTGCAATGATCCTTTTCCTCAATTTTGAAACTTCTAAGATAtc
Run BLAST on NCBI

transcript from alignment at sc0000074:471941..472884+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007160 ID=TCONS_00007160|Name=TCONS_00007160|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at sc0000074:471941..472884+ (Clytia hemisphaerica)
tagttttgatgGTACTgtgtaaagaaaaacaaaaacaaaaacaatttttt
ttaatttctaaaagataattgttgttttttttcaaattattctaCAAAAG
TTGGGCCTTCTTGTCTTCTTTTTCCCACGAGGAGAATTcttctttttcga
attttcggATCTTGGCCATTTCGTCCGTGGAGCGATGTTGATGCTATATA
CGTAcaacgaaaaaatgaaaaattcaaacttattaATATAACCGTTGTAG
TTGTTATATTAATCTGGAGAACAAATAATAGATGGTTCGTGAATCAAAAG
TCGGGGGGCAGATAGATTTTCTCGTCCCttcgtactcataaccgcagcaA
ATCTCCGAGGTGAGAAGTCTctggcccatagaacaatgtaggtaaGGGAA
GTCGGCAAAGCAGATCCGTAACTTCGGGGAAAGGATTGGTTCTAAGGGTC
GGGTTTGTCCATCTACGTGATTGTCAGTAGTGAGTAAATGTTCGGAAGGA
TATAAAAGattggaaattgaaaaagttgTATACAGTCAAGTTTCTCtatt
tcgaacctctataattcgactctttctgtaattcgaactgaaAATAAGCC
CCTCCTGGAAAGCAGTGTGAAAttgtctctataattcgaatctttcgagG
AAatttcttggtcccttgaagatcgagtTAGAGACTGTTAACTGTATACC
ACACTTCTCAATTGATCTGAGGGAACCgaacttcaaaaataaaattgtaa
acaaaTGAGATCAACAAAAGCGTTCTACAAGAGGTTTAACATGTACCTAT
ACTACAAATTTCCAAATTGATGGTGACGTCATTATATTTTCATTTCCTCT
TATTTCGTGATCTCAATATGTACTCTAATTCATCCAATAAGTTCAAACGT
TCTGCAATGATCCTTTTCCTCAATTTTGAAACTTCTAAGATAtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004015XLOC_004015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007160-exon-sc0000074-1491911889:471941..472137TCONS_00007160-exon-sc0000074-1491911889:471941..472137Clytia hemisphaericaexon
TCONS_00007160-exon-sc0000074-1510915933:471941..472137TCONS_00007160-exon-sc0000074-1510915933:471941..472137Clytia hemisphaericaexon
TCONS_00007160-exon-sc0000074-1575043694:471941..472137TCONS_00007160-exon-sc0000074-1575043694:471941..472137Clytia hemisphaericaexon
TCONS_00007160-exon-sc0000074-1491911889:472737..472884TCONS_00007160-exon-sc0000074-1491911889:472737..472884Clytia hemisphaericaexon
TCONS_00007160-exon-sc0000074-1510915933:472737..472884TCONS_00007160-exon-sc0000074-1510915933:472737..472884Clytia hemisphaericaexon
TCONS_00007160-exon-sc0000074-1575043694:472737..472884TCONS_00007160-exon-sc0000074-1575043694:472737..472884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:471941..472884 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	10.8276	9.60609	5.20348	4.46773	4.19535	1.21201	2.83938	1.79483	0	0.252471	0.579933	7.64776	3.38175	6.10536	4.92537	5.50012	0	3.47281	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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