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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007141 ID=TCONS_00007141|Name=TCONS_00007141|organism=Clytia hemisphaerica|type=transcript|length=1694bp
CTTGTGCTTGTTGAAATGATTGAAATATTAAGAGTGAAATATTACCAAAT
ACAGTTAAAAATTTACAGCCTTTCGCAATCTGTATCCTTTTAACAACCCT
AAAGATAGGATATGCGGGGTTACcgatagaaaaaagtttttcacacTCAC
TGCTATGTAGAGAAAAGGTAACTTTAATTAGTAACTTTGAAAatataccc
ccttctcacagacccagtaggattttttcagccagtgggaatgagaataa
cggactgaaactcgatggggattgatattatttttttacgGCTGGGATGA
GGATGGGAAAAAATGCAaacattttgcagtgaggattggtttatttgata
tttttcggtggggacaaaaattgaagggtaattttccaccggggaccgtg
ggtctgtgagaagggggtgtgaaaAGGGTTGACGAAATTAGAAAAGAATA
GTCGATATTAGACTAGCTTACTAGCTTAATGTAAAACACTAGTCTTAGGT
CGACCTCTCTTAATCCTGTTGGTGCTGCTATTCATGGCGATTCTGAATTG
TCTCATCCAAGATCGTCCAGTGAAACTTTCACCAAGTTGTAAACATTTGC
TTGCCAAGTCTTTAGAAGACATTCCCGTAGTTTCAAGAATGATATTATGT
ACATTTTGCTGTTCTTGTTGTAAAAAAGCTAGATTCGATAAAGATGAACT
CCTTCGATTGCTCAGCCTCTCTTTCATGTGTGCCATTTGTAATTGCGGTA
GAGAAGTGTTGAGAACTGATTCGTTTTCATCTGGCTCCACATCATTGTCA
ATTTTCGCTCCTGTCtctgttttgactgcattgtcTCGGATTATTGACTT
ATGTTTTGAGTTATTAGTTTCAGTTACTATATTGGGTAACGTTTTATATT
TTCGTATCGTAGGCAGTTTTTTATGGCTGTCTTTTCTTGTGGACGGTTCT
GTTTTGGGGAAATCAAGTTTAGCGTCATTCAAATCTAGACTTTTCCCTCT
TTCTTTTCGATTGTTTTGGATGTTTGTCGGTTTGAACGATTTAGTGTGGG
AGTCTTTAAGAAtaggttttgattttgaatcaGGTCTTATGGCTTTTGAT
TTTCTTCGTGAAAGAATCGAGTCCCTATGGGGAATTTCAATGTCCTCGTC
AGGGAATTTAACTTCAAACTTGTGGTTGGTGTTTCTCCTAGGTAGTGGTT
TTAAAGGTTCATGGTTGCAAGGGCATTTCTTGATTGATTTCCCATGGTTA
AATCCTGCTACAGTGATCTCATTCCCTAGGTAGGTATTGTTTTCTTTCCC
TATGGTTGAATGTAGCAGTAAGGAGTGCTTTGTGTCTTCTCCTTTGAAAT
AACTGACTCTTTCTTTAGCTGCTGAGCACCATTTCATTATCCGAGCATGT
GAAGCTAAGCTAAAACCGTTGATACGCGAATGTACAAATTGAGAAGCGAT
AAGTAACTTCCAGCATTCGAAATTCTTATATTTGGACGCGTAATTGCTTG
GTGTTCTTTTATAAGCATCTCGAGCGATCATAGAAGACGGACTGTGACGT
ACGAACATTTTGAGACATTGAAAACTGCCCATTTGGGCGGCTTGATGGAT
GGGCGTTTTGAAGATGCCAGGGTGGGATTGGGTGGAGCACCATTGGCGTG
AACAGTGTTCGCCTACGGGTTCTTCGCATCTAAAAGATAAGAAA Run BLAST on NCBI transcript from alignment at sc0000074:149154..150902+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007141 ID=TCONS_00007141|Name=TCONS_00007141|organism=Clytia hemisphaerica|type=transcript|length=1749bp|location=Sequence derived from alignment at sc0000074:149154..150902+ (Clytia hemisphaerica)
CTTGTGCTTGTTGAAATGATTGAAATATTAAGAGTGAAATATTACCAAAT
ACAGTTAAAAATTTACAGCCTTTCGCAATCTGTATCCTTTTAACAACCCT
AAAGATAGGATATGCGGGGTTACcgatagaaaaaagtttttcacacTCAC
TGCTATGTAGAGAAAAGGTAACTTTAATTAGTAACTTTGAAAatataccc
ccttctcacagacccagtaggattttttcagccagtgggaatgagaataa
cggactgaaactcgatggggattgatattatttttttacgGCTGGGATGA
GGATGGGAAAAAATGCAaacattttgcagtgaggattggtttatttgata
tttttcggtggggacaaaaattgaagggtaattttccaccggggaccgtg
ggtctgtgagaagggggtgtgaaaAGGGTTGACGAAATTAGAAAAGAATA
GTCGATATTAGACTAGCTTACTAGCTTAATGTAAAACACTAGTCTTAGGT
CGACCTCTCTTAATCCTGTTGGTGCTGCTATTCATGGCGATTCTGAATTG
TCTCATCCAAGATCGTCCAGTGAAACTTTCACCAAGTTGTAAACATTTGC
TTGCCAAGTCTTTAGAAGACATTCCCGTAGTTTCAAGAATGATATTATGT
ACATTTTGCTGTTCTTGTTGTAAAAAAGCTAGATTCGATAAAGATGAACT
CCTTCGATTGCTCAGCCTCTCTTTCATGTGTGCCATTTGTAATTGCGGTA
GAGAAGTGTTGAGAACTGATTCGTTTTCATCTGGCTCCACATCATTGTCA
ATTTTCGCTCCTGTCtctgttttgactgcattgtcTCGGATTATTGACTT
ATGTTTTGAGTTATTAGTTTCAGTTACTATATTGGGTAACGTTTTATATT
TTCGTATCGTAGGCAGTTTTTTATGGCTGTCTTTTCTTGTGGACGGTTCT
GTTTTGGGGAAATCAAGTTTAGCGTCATTCAAATCTAGACTTTTCCCTCT
TTCTTTTCGATTGTTTTGGATGTTTGTCGGTTTGAACGATTTAGTGTGGG
AGTCTTTAAGAAtaggttttgattttgaatcaGGTCTTATGGCTTTTGAT
TTTCTTCGTGAAAGAATCGAGTCCCTATGGGGAATTTCAATGTCCTCGTC
AGGGAATTTAACTTCAAACTTGTGGTTGGTGTTTCTCCTAGGTAGTGGTT
TTAAAGGTTCATGGTTGCAAGGGCATTTCTTGATTGATTTCCCATGGTTA
AATCCTGCTACAGTGATCTCATTCCCTAGGTAGGTATTGTTTTCTTTCCC
TATGGTTGAATGTAGCAGTAAGGAGTGCTTTGTGTCTTCTCCTTTGAAAT
AACTGACTCTTTCTTTAGCTGCTGAGCACCATTTCATTATCCGAGCATGT
GAAGCTAAGCTAAAACCGTTGATACGCGAATGTACAAATTGAGAAGCGAT
AAGTAACTTCCAGCATTCGAAATTCTTATATTTGGACGCGTAATTGCTTG
GTGTTCTTTTATAAGCATCTCGAGCGATCATAGAAGACGGACTGTGACGT
ACGAACATTTTGAGACATTGAAAACTGCCCATTTGGGCGNGACGGGCTGT
GACGTACGAACATTTTGAGACATTGAAAACTGCCCATTTGGGCGGCTTGA
TGGATGGGCGTTTTGAAGATGCCAGGGTGGGATTGGGTGGAGCACCATTG
GCGTGAACAGTGTTCGCCTACGGGTTCTTCGCATCTAAAAGATAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007141-exon-sc0000074-1491911889:149154..150719 | TCONS_00007141-exon-sc0000074-1491911889:149154..150719 | Clytia hemisphaerica | exon |
| TCONS_00007141-exon-sc0000074-1510915933:149154..150719 | TCONS_00007141-exon-sc0000074-1510915933:149154..150719 | Clytia hemisphaerica | exon |
| TCONS_00007141-exon-sc0000074-1575043694:149154..150719 | TCONS_00007141-exon-sc0000074-1575043694:149154..150719 | Clytia hemisphaerica | exon |
| TCONS_00007141-exon-sc0000074-1491911889:150775..150902 | TCONS_00007141-exon-sc0000074-1491911889:150775..150902 | Clytia hemisphaerica | exon |
| TCONS_00007141-exon-sc0000074-1510915933:150775..150902 | TCONS_00007141-exon-sc0000074-1510915933:150775..150902 | Clytia hemisphaerica | exon |
| TCONS_00007141-exon-sc0000074-1575043694:150775..150902 | TCONS_00007141-exon-sc0000074-1575043694:150775..150902 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:149154..150902 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020683 | Ankyrin_rpt-contain_dom |
Blast
The following BLAST results are available for this feature:
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