TCONS_00007139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007139
Unique NameTCONS_00007139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007139 ID=TCONS_00007139|Name=TCONS_00007139|organism=Clytia hemisphaerica|type=transcript|length=1230bp
AgcaccaccacctccaccaccaccGCCTGCTGCCTCAGCCAAACGGTGGT
TACCACCTGCCCACGTGTTACTTCCAATAGTACCAGCAAGACCAGGGATG
GCATTATTCAACCCATACAAACCAAGAGGATCCATGGGTGATGCATGCGC
TGTGGTTCCACCATCAGGGTTGCCAGCAAGACTGACACCTCCTACACGAC
CTAGACCGATCCCTATACCTCCACCTCGTCCAAGAGGTAGATGGGTTCCT
GTAAAACCACCTCCTAGACCAGGGATGGTAGGGTGTCCAGCTAAACCACC
GATACCTCCTGCAGTTGCTAAACCACCTATTCCAATGCCGTTAATACCAC
CTAGGCCACCTCCTAGTCCATGACCGAGGCCTCCAACTCCACCAGGGGCT
ATTCCGCCTGGAAGCCCTCCAAAAGCTCCTGCTCCTAAATGATAGGCTCC
AAACCCCATGTAAGCTGGGTTGATTCCAATATTCAAACCACTTCCTCCAC
CAATTCCTGCCCCAGCTAAAGGCGCACCTGCAGCCAGAATAGCAGCTGAT
AGCGGGGAACCTGAGTTCAGGGCGGCAGTCGTTGCGGAGCCAGCAAGGTT
AGCTCCGGCAAACGGTAACACTGGATATTTAACTTTCTTAAGTTCTTTAG
ATTGTACAAGTTTCTCAGCATTGGACACAGTCTGACCAAGTTTTTCGGTA
AAATCGTTAGCATTCTCGTTGCTTTGTTTAGCAATATCTTTGAATGATTC
AGCAGCAGATTTGAGTACACTTTGTGCAGTCTCCATCATTGCATGGTGAT
CAACTGTGGCAGCTGGTGCAGCTACTGGCTTGTCAAATCGCTCCATTGCA
TGACCCAGGGCAGCAATACCTGCTTGAATGTTTCCCATTTGTCCTTCAAG
TTTTGTTTGTGCCGTTAGTAAATCGGTTTGTTGCTTTTGGACCACTGGAT
CAGGAGCCGGGACCACTTGCGGGGCAACTGCGGCTGCATCAAGGGGAACG
TCAATGACAGTCGAATTCCAATTTGGTTCAGAAAGTTTCTCGCCCCCACG
ATTGGGCCCGTGTCCATTATAAAATACCGGTCCGGCCGGATGGGTACCAG
GGGCTGGTAATGTGATCCTGTAGTCTGGCCATCTGGTCATTTTTTCTTGC
AATCCAGACATGGTGTTTGCAAGAGCTAACATACTTTCTTCTAGTTTCGC
GTTACTCTTGATCCTTTCAGCATTGACACC
Run BLAST on NCBI

transcript from alignment at sc0000074:86595..88354+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007139 ID=TCONS_00007139|Name=TCONS_00007139|organism=Clytia hemisphaerica|type=transcript|length=1760bp|location=Sequence derived from alignment at sc0000074:86595..88354+ (Clytia hemisphaerica)
AgcaccaccacctccaccaccaccGCCTGCTGCCTCAGCCAAACGGTGGT
TACCACCTGCCCACGTGTTACTTCCAATAGTACCAGCAAGACCAGGGATG
GCATTATTCAACCCATACAAACCAAGAGGATCCATGGGTGATGCATGCGC
TGTGGTTCCACCATCAGGGTTGCCAGCAAGACTGACACCTCCTACACGAC
CTAGACCGATCCCTATACCTCCACCTCGTCCAAGAGGTAGATGGGTTCCT
GTAAAACCACCTCCTAGACCAGGGATGGTAGGGTGTCCAGCTAAACCACC
GATACCTCCTGCAGTTGCTAAACCACCTATTCCAATGCCGTTAATACCAC
CTAGGCCACCTCCTAGTCCATGACCGAGGCCTCCAACTCCACCAGGGGCT
ATTCCGCCTGGAAGCCCTCCAAAAGCTCCTGCTCCTAAATGATAGGCTCC
AAACCCCATGTAAGCTGGGTTGATTCCAATATTCAAACCACTTCCTCCAC
CAATTCCTGCCCCAGCTAAAGGCGCACCTGCAGCCAGAATAGCAGCTGAT
AGCGGGGAACCTGAGTTCAGGGCGGCAGTCGTTGCGGAGCCAGCAAGGTT
AGCTCCGGCAAACGGTAACACTGGATATTTAACTTTCTTAAGTTCTTTAG
ATTGTACAAGTTTCTCAGCATTGGACACAGTCTGACCAAGTTTTTCGGTA
AAATCGTTAGCATTCTCGTTGCTTTGTTTAGCAATATCTTTGAATGATTC
AGCAGCAGATTTGAGTACACTTTGTGCAGTCTCCATCATTGCATGGTGAT
CAACTGTGGCAGCTGGTGCAGCTACTGGCTTGTCAAATCGCTCCATTGCA
TGACCCAGGGCAGCAATACCTATAAATTGAAAGTTAAAAAAGCAGTGTGA
ATAAAACAGGCTGAGACATAGTTATGTCATAGGATTTGATTTAGGATTTG
TAATGTTTTCAAGTAGGCCAGtattctgaaaatttaagactAGAATAtgt
ttctgttttcttttccCTTTTAATAGGAGTTGTGAGACGTTGTCTGATCC
AAGCAATGGATCGTACGGAGATGATAATATCACTTAAGAATCTTTAAATC
CAAATAATCTAAActcaaaatgggcttttccagaaatagtccgtgccccc
tgttgaggatattggttaacgatttttgttcaaaagtggatatccagggg
gttgatcGTATTTTTAAGAGTGAATATCcaggtctttactaataaagtag
gatattcAGGCGGttcgattctttgaaaaaacattatcctcaacagtggg
ggtaaactcaatttctggaaaagcccaatacctTGAGGAAGGATACGAAA
AACACAGACTAAGAAGACTACTTGATATCATGTGAAATTGGAAACATACC
TGCTTGAATGTTTCCCATTTGTCCTTCAAGTTTTGTTTGTGCCGTTAGTA
AATCGGTTTGTTGCTTTTGGACCACTGGATCAGGAGCCGGGACCACTTGC
GGGGCAACTGCGGCTGCATCAAGGGGAACGTCAATGACAGTCGAATTCCA
ATTTGGTTCAGAAAGTTTCTCGCCCCCACGATTGGGCCCGTGTCCATTAT
AAAATACCGGTCCGGCCGGATGGGTACCAGGGGCTGGTAATGTGATCCTG
TAGTCTGGCCATCTGGTCATTTTTTCTTGCAATCCAGACATGGTGTTTGC
AAGAGCTAACATACTTTCTTCTAGTTTCGCGTTACTCTTGATCCTTTCAG
CATTGACACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004005XLOC_004005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007139-exon-sc0000074-1491911889:86595..87459TCONS_00007139-exon-sc0000074-1491911889:86595..87459Clytia hemisphaericaexon
TCONS_00007139-exon-sc0000074-1510915933:86595..87459TCONS_00007139-exon-sc0000074-1510915933:86595..87459Clytia hemisphaericaexon
TCONS_00007139-exon-sc0000074-1575043694:86595..87459TCONS_00007139-exon-sc0000074-1575043694:86595..87459Clytia hemisphaericaexon
TCONS_00007139-exon-sc0000074-1491911889:87990..88354TCONS_00007139-exon-sc0000074-1491911889:87990..88354Clytia hemisphaericaexon
TCONS_00007139-exon-sc0000074-1510915933:87990..88354TCONS_00007139-exon-sc0000074-1510915933:87990..88354Clytia hemisphaericaexon
TCONS_00007139-exon-sc0000074-1575043694:87990..88354TCONS_00007139-exon-sc0000074-1575043694:87990..88354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:86595..88354 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0398666	0	0	0.0468597	0	0.529418	0.546695	0.103401	0.0631877	0	0.176675	1.3739	1.5517	0.57404	1.84498	0.933022	0.646246	0.0369379	0	0.649327	0.545043	0.188211	0.366369	3.30491	3.67477	0.171547	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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