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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007138 ID=TCONS_00007138|Name=TCONS_00007138|organism=Clytia hemisphaerica|type=transcript|length=1888bp
GGAATTTTTCACCTTCTTCTGGACCATGATTGCTGTCATTGTGGTGATGA
TGATGAGGCTCCTCGTGATGATCTTCTACGTGCTCAGGCTCAGCATGTGC
ATGCTCTTCATGATGAAAGTCGTTCTTCTCAGCCTCTTCATGAAGTCCAT
GCTCCTGTTCATGGTCATTAGGAGTTGAAACCAGTTTCTCATAATTAATC
TTTGGTTCTTCAGCATGGTGATCCATATGATGATCTTCGTGGAAATCATC
TCCATGATCGAATGTTCTGTTACGTTTAGATGATAATCCTAATCGATGTT
TTTGCTTcttatgtttgtttttcttcgaaTAATGTTTCTTTTTACCATGG
TATTTCTTTCGTTTGTTTTTACTGTGTTTCTGCACGTGTTTTGATATCTT
TTTATGCCACTTTTTATGCTTCttttgttgataatttttagcttttttgg
tGGTATGCTTCTTACTTGAATTGTGTTTGCTCCAGTGCTTCTTCTTATGA
TGTTTCTTTCCAATCTTCTTTAGATGTTTATTTTGATGTATCTTTCTACT
CTTAGATTTTTGGATCAGCTTTGTAATTTTCCTCGgtttatgttttttat
tttgcctCGACTTCCCTTTTCTTTTTCGCGatgaattatttttgaaatct
ttctttcCATGTCCCTTTTTCAAATTGAGCTTTTTCTTAATGTGTTTTGA
TGTCGACTTAGGctttacaattttatttttcttgtctaATCCCCAAGACG
TATCAGCAAGTTTGTAAGTAATATCATCAAATCTTTTCTGAGCATCTTTA
TACTCTTTGTTTGGATCTTCTTCAGCAAACATATtcttgattttattttc
aacaccATAAATGAGATTGTTTGTAATCTGGTCTTGCTTTTGTACTATTG
ATTGATCTTTTTCGTCTGTCTCTAGCTCTTCACTATCTTCGTTGTCCTCT
CCATTCTCTTCTACATTGTCATCTTGCTCTGGAATACTGTGCTTCTTAGT
TTCTTTCAAAGACATATGGTTCAGTGGCGTAGCAGTTGATAGCTCAGTCT
TTTTAATATGATTTCCTCCTCGTTTTGATAAACCCCAAGGTGTATTTGTC
AATTTCATCAGCCTGTCAACGAATGTGTTTTCAGCGTACCGTCCATCATT
TTTACCATCAAGTATGTTATCATAAAGACTAAGAACAGCTTGCTTTTCAT
TCGAGAAATGCTTATCCATAGCATTACGCTCCATTTCGGCGTAATCAGCT
GAAACAATATCTTTGCTGGCTACATCAGACAAGTTTTTCTCGATATTCTG
TTTTTTAGCTACAAGATTTcttttaattttgctttttgTTACACTCCAGG
GTCCAGCACCTGTCATTCGTGAAGCTTGTTTCAAAAAGGCCATTTCAGGG
CTTTTATGGTGACCATGTCCATGCTGTACGTTCTTGAAAAGGTCAACAAT
GTTATTTGTTTGATCCATGATAGACTGTTGAACCATCTTGCGTTCATCAT
CTTGATAAGACTTTGGTAACACATTATCAACAGTGGGAATATGTTCACCA
GTATCGGAATTAGGTTTTGAATCTTCTCCACCAACATCTATATCTTCGTG
TTCATGGTGGTGACCTAAATCATCTCTGGAGTTTTTATCAAACTCCTTTC
TGAAGTCATTTCCACCATTTATCATCTTCTGTATCTGTTTCACTGTATCT
TTTTCTTTACCAGGATCCATGGTGAATTCGATTGGTGCAGGTCGATCAGA
GCAACTGGAGCCTTTGTTTCGGTAGCCAACCTCACTCTTTCTGCAACCAG
CGCCTGGGGATTTATGAAATTCGGATACATCAGCGATATGGGTTTCTTTA
TCTCTTTCTTTACCGTCACGTTGTTGGAGGCCATAACC Run BLAST on NCBI transcript from alignment at sc0000074:73120..75880+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007138 ID=TCONS_00007138|Name=TCONS_00007138|organism=Clytia hemisphaerica|type=transcript|length=2761bp|location=Sequence derived from alignment at sc0000074:73120..75880+ (Clytia hemisphaerica)
GGAATTTTTCACCTTCTTCTGGACCATGATTGCTGTCATTGTGGTGATGA
TGATGAGGCTCCTCGTGATGATCTTCTACGTGCTCAGGCTCAGCATGTGC
ATGCTCTTCATGATGAAAGTCGTTCTTCTCAGCCTCTTCATGAAGTCCAT
GCTCCTGTTCATGGTCATTAGGAGTTGAAACCAGTTTCTCATAATTAATC
TTTGGTTCTTCAGCATGGTGATCCATATGATGATCTTCGTGGAAATCATC
TCCATGATCGAATGTTCTGTTACGTTTAGATGATAATCCTAATCGATGTT
TTTGCTTcttatgtttgtttttcttcgaaTAATGTTTCTTTTTACCATGG
TATTTCTTTCGTTTGTTTTTACTGTGTTTCTGCACGTGTTTTGATATCTT
TTTATGCCACTTTTTATGCTTCttttgttgataatttttagcttttttgg
tGGTATGCTTCTTACTTGAATTGTGTTTGCTCCAGTGCTTCTTCTTATGA
TGTTTCTTTCCAATCTTCTTTAGATGTTTATTTTGATGTATCTTTCTACT
CTTAGATTTTTGGATCAGCTTTGTAATTTTCCTCGgtttatgttttttat
tttgcctCGACTTCCCTTTTCTTTTTCGCGatgaattatttttgaaatct
ttctttcCATGTCCCTTTTTCAAATTGAGCTTTTTCTTAATGTGTTTTGA
TGTCGACTTAGGctttacaattttatttttcttgtctaATCCCCAAGACG
TATCAGCAAGTTTGTAAGTAATATCATCAAATCTTTTCTGAGCATCTTTA
TACTCTTTGTTTGGATCTTCATCTGCAAACATATTCTTGATATTATTTTC
AACGCCATAAATGAGGTTGTTTGTAATCTTGTCTTGTTTTTCAATCAACT
GGCCATGTTTGATATCACCGCTTTCGTCGACACTATCTTCATCAgtttca
ttttcagtttgatCTTCACTTTCATTATTTTGTTCTTCTGATACAACATT
TTTCTTTACCGTTTGAGCTACATCTAAATTATTAACAACCTTCTGTTTCT
TTCCTAATCCCCAACTGGTGCCAGCTAATTTTTCCATCTTATGTACAAAG
AGATCTTCAGCTTTTTCATCATTACCAGTATTATGCGTGACATCATCAAA
CAGACCTTGCATGTCATTTTCTTCATGTTCAATATTATGATTCATTTTAT
CGTGTTCCTCCTGTACATATCCTTCAGGTAACATATTATCAGTGCTATTG
AATCGGCTTTCTTCCTCATTTTCACGCTTCTTTCTTCCCTGAATTTGACT
TTTTCTTGTTAATCCCCAAGTTGTATCAGCCAACTTATCAGTTATATCTT
TGAATCGTTTCTGAGCATCTTTGTATTCCTTGTTTGGGTCTTCTTCAGCA
AACATCCCTTTTATTGTATTTTCGACCCCGTAAATGAAATTATTTGTTAT
TTTATCTTGTTTTGCAACCAATTGATTGTGCTCTGTATCTTCTTCTTCTG
AAGAATCATTGAAGTCATTTTCCTGATcttcgtttttattttcattttcc
tctGTACCAGCGTTATCAATGTCACGTTTTACTCTTCTttttatattact
tttctttgtCAATCCCCAAGTCGTATCAGCGAGTTTGTTGGTAATATCAT
CAAATCTTTTCTGAGCATCTTTATACTCTTTATTTGGGTCTACTTCAGCA
AACATATtcttgattttattttcaacaccATAAATGAGATTGTTTGTAAT
CTGGTCTTGCTTTTGTACTATTGATTGATCTTTTTCGTCTGTCTCTAGCT
CTTCACTATCTTCGTTGTCCTCTCCATTCTCTTCTACATTGTCATCTTGC
TCTGGAATACTGTGCTTCTTAGTTTCTTTCAAAGACATATGGTTCAGTGG
CGTAGCAGTTGATAGCTCAGTCTTTTTAATATGATTTCCTCCTCGTTTTG
ATAAACCCCAAGGTGTATTTGTCAATTTCATCAGCCTGTCAACGAATGTG
TTTTCAGCGTACCGTCCATCATTTTTACCATCAAGTATGTTATCATAAAG
ACTAAGAACAGCTTGCTTTTCATTCGAGAAATGCTTATCCATAGCATTAC
GCTCCATTTCGGCGTAATCAGCTGAAACAATATCTTTGCTGGCTACATCA
GACAAGTTTTTCTCGATATTCTGTTTTTTAGCTACAAGATTTcttttaat
tttgctttttgTTACACTCCAGGGTCCAGCACCTGTCATTCGTGAAGCTT
GTTTCAAAAAGGCCATTTCAGGGCTTTTATGGTGACCATGTCCATGCTGT
ACGTTCTTGAAAAGGTCAACAATGTTATTTGTTTGATCCATGATAGACTG
TTGAACCATCTTGCGTTCATCATCTTGATAAGACTTTGGTAACACATTAT
CAACAGTGGGAATATGTTCACCAGTATCGGAATTAGGTTTTGAATCTTCT
CCACCAACATCTATATCTTCGTGTTCATGGTGGTGACCTAAATCATCTCT
GGAGTTTTTATCAAACTCCTTTCTGAAGTCATTTCCACCATTTATCATCT
TCTGTATCTGTTTCACTGTATCTTTTTCTTTACCAGGATCCATGGTGAAT
TCGATTGGTGCAGGTCGATCAGAGCAACTGGAGCCTTTGTTTCGGTAGCC
AACCTCACTCTTTCTGCAACCAGCGCCTGGGGATTTATGAAATTCGGATA
CATCAGCGATATGGGTTTCTTTATCTCTTTCTTTACCGTCACGTTGTTGG
AGGCCATAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007138-exon-sc0000074-1491911889:73120..73939 | TCONS_00007138-exon-sc0000074-1491911889:73120..73939 | Clytia hemisphaerica | exon |
| TCONS_00007138-exon-sc0000074-1510915933:73120..73939 | TCONS_00007138-exon-sc0000074-1510915933:73120..73939 | Clytia hemisphaerica | exon |
| TCONS_00007138-exon-sc0000074-1575043694:73120..73939 | TCONS_00007138-exon-sc0000074-1575043694:73120..73939 | Clytia hemisphaerica | exon |
| TCONS_00007138-exon-sc0000074-1491911889:74813..75880 | TCONS_00007138-exon-sc0000074-1491911889:74813..75880 | Clytia hemisphaerica | exon |
| TCONS_00007138-exon-sc0000074-1510915933:74813..75880 | TCONS_00007138-exon-sc0000074-1510915933:74813..75880 | Clytia hemisphaerica | exon |
| TCONS_00007138-exon-sc0000074-1575043694:74813..75880 | TCONS_00007138-exon-sc0000074-1575043694:74813..75880 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:73120..75880 + |
Blast
The following BLAST results are available for this feature:
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