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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007136 ID=TCONS_00007136|Name=TCONS_00007136|organism=Clytia hemisphaerica|type=transcript|length=1889bp
TGGAATTTTTCACCTTCTTCTGGACCATGATTGCTGTCATTGTGGTGATG
ATGATGAGGCTCCTCGTGATGATCTTCTACGTGCTCAGGCTCAGCATGTG
CATGCTCTTCATGATGAAAGTCGTTCTTCTCAGCCTCTTCATGAAGTCCA
TGCTCCTGTTCATGGTCATTAGGAGTTGAAACCAGTTTCTCATAATTAAT
CTTTGGTTCTTCAGCATGGTGATCCATATGATGATCTTCGTGGAAATCAT
CTCCATGATCGAATGTTCTGTTACGTTTAGATGATAATCCTAATCGATGT
TTTTGCTTcttatgtttgtttttcttcgaaTAATGTTTCTTTTTACCATG
GTATTTCTTTCGTTTGTTTTTACTGTGTTTCTGCACGTGTTTTGATATCT
TTTTATGCCACTTTTTATGCTTCttttgttgataatttttagcttttttg
gtGGTATGCTTCTTACTTGAATTGTGTTTGCTCCAGTGCTTCTTCTTATG
ATGTTTCTTTCCAATCTTCTTTAGATGTTTATTTTGATGTATCTTTCTAC
TCTTAGATTTTTGGATCAGCTTTGTAATTTTCCTCGgtttatgtttttta
ttttgcctCGACTTCCCTTTTCTTTTTCGCGatgaattatttttgaaatc
tttctttcCATGTCCCTTTTTCAAATTGAGCTTTTTCTTAATGTGTTTTG
ATGTCGACTTAGGctttacaattttatttttcttgtctaATCCCCAAGAC
GTATCAGCAAGTTTGTAAGTAATATCATCAAATCTTTTCTGAGCATCTTT
ATACTCTTTGTTTGGATCTTCATCTGCAAACATATtcttgattttatttt
caacaccATAAATGAGATTGTTTGTAATCTGGTCTTGCTTTTGTACTATT
GATTGATCTTTTTCGTCTGTCTCTAGCTCTTCACTATCTTCGTTGTCCTC
TCCATTCTCTTCTACATTGTCATCTTGCTCTGGAATACTGTGCTTCTTAG
TTTCTTTCAAAGACATATGGTTCAGTGGCGTAGCAGTTGATAGCTCAGTC
TTTTTAATATGATTTCCTCCTCGTTTTGATAAACCCCAAGGTGTATTTGT
CAATTTCATCAGCCTGTCAACGAATGTGTTTTCAGCGTACCGTCCATCAT
TTTTACCATCAAGTATGTTATCATAAAGACTAAGAACAGCTTGCTTTTCA
TTCGAGAAATGCTTATCCATAGCATTACGCTCCATTTCGGCGTAATCAGC
TGAAACAATATCTTTGCTGGCTACATCAGACAAGTTTTTCTCGATATTCT
GTTTTTTAGCTACAAGATTTcttttaattttgctttttgTTACACTCCAG
GGTCCAGCACCTGTCATTCGTGAAGCTTGTTTCAAAAAGGCCATTTCAGG
GCTTTTATGGTGACCATGTCCATGCTGTACGTTCTTGAAAAGGTCAACAA
TGTTATTTGTTTGATCCATGATAGACTGTTGAACCATCTTGCGTTCATCA
TCTTGATAAGACTTTGGTAACACATTATCAACAGTGGGAATATGTTCACC
AGTATCGGAATTAGGTTTTGAATCTTCTCCACCAACATCTATATCTTCGT
GTTCATGGTGGTGACCTAAATCATCTCTGGAGTTTTTATCAAACTCCTTT
CTGAAGTCATTTCCACCATTTATCATCTTCTGTATCTGTTTCACTGTATC
TTTTTCTTTACCAGGATCCATGGTGAATTCGATTGGTGCAGGTCGATCAG
AGCAACTGGAGCCTTTGTTTCGGTAGCCAACCTCACTCTTTCTGCAACCA
GCGCCTGGGGATTTATGAAATTCGGATACATCAGCGATATGGGTTTCTTT
ATCTCTTTCTTTACCGTCACGTTGTTGGAGGCCATAACC Run BLAST on NCBI transcript from alignment at sc0000074:73119..75880+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007136 ID=TCONS_00007136|Name=TCONS_00007136|organism=Clytia hemisphaerica|type=transcript|length=2762bp|location=Sequence derived from alignment at sc0000074:73119..75880+ (Clytia hemisphaerica)
TGGAATTTTTCACCTTCTTCTGGACCATGATTGCTGTCATTGTGGTGATG
ATGATGAGGCTCCTCGTGATGATCTTCTACGTGCTCAGGCTCAGCATGTG
CATGCTCTTCATGATGAAAGTCGTTCTTCTCAGCCTCTTCATGAAGTCCA
TGCTCCTGTTCATGGTCATTAGGAGTTGAAACCAGTTTCTCATAATTAAT
CTTTGGTTCTTCAGCATGGTGATCCATATGATGATCTTCGTGGAAATCAT
CTCCATGATCGAATGTTCTGTTACGTTTAGATGATAATCCTAATCGATGT
TTTTGCTTcttatgtttgtttttcttcgaaTAATGTTTCTTTTTACCATG
GTATTTCTTTCGTTTGTTTTTACTGTGTTTCTGCACGTGTTTTGATATCT
TTTTATGCCACTTTTTATGCTTCttttgttgataatttttagcttttttg
gtGGTATGCTTCTTACTTGAATTGTGTTTGCTCCAGTGCTTCTTCTTATG
ATGTTTCTTTCCAATCTTCTTTAGATGTTTATTTTGATGTATCTTTCTAC
TCTTAGATTTTTGGATCAGCTTTGTAATTTTCCTCGgtttatgtttttta
ttttgcctCGACTTCCCTTTTCTTTTTCGCGatgaattatttttgaaatc
tttctttcCATGTCCCTTTTTCAAATTGAGCTTTTTCTTAATGTGTTTTG
ATGTCGACTTAGGctttacaattttatttttcttgtctaATCCCCAAGAC
GTATCAGCAAGTTTGTAAGTAATATCATCAAATCTTTTCTGAGCATCTTT
ATACTCTTTGTTTGGATCTTCATCTGCAAACATATTCTTGATATTATTTT
CAACGCCATAAATGAGGTTGTTTGTAATCTTGTCTTGTTTTTCAATCAAC
TGGCCATGTTTGATATCACCGCTTTCGTCGACACTATCTTCATCAgtttc
attttcagtttgatCTTCACTTTCATTATTTTGTTCTTCTGATACAACAT
TTTTCTTTACCGTTTGAGCTACATCTAAATTATTAACAACCTTCTGTTTC
TTTCCTAATCCCCAACTGGTGCCAGCTAATTTTTCCATCTTATGTACAAA
GAGATCTTCAGCTTTTTCATCATTACCAGTATTATGCGTGACATCATCAA
ACAGACCTTGCATGTCATTTTCTTCATGTTCAATATTATGATTCATTTTA
TCGTGTTCCTCCTGTACATATCCTTCAGGTAACATATTATCAGTGCTATT
GAATCGGCTTTCTTCCTCATTTTCACGCTTCTTTCTTCCCTGAATTTGAC
TTTTTCTTGTTAATCCCCAAGTTGTATCAGCCAACTTATCAGTTATATCT
TTGAATCGTTTCTGAGCATCTTTGTATTCCTTGTTTGGGTCTTCTTCAGC
AAACATCCCTTTTATTGTATTTTCGACCCCGTAAATGAAATTATTTGTTA
TTTTATCTTGTTTTGCAACCAATTGATTGTGCTCTGTATCTTCTTCTTCT
GAAGAATCATTGAAGTCATTTTCCTGATcttcgtttttattttcattttc
ctctGTACCAGCGTTATCAATGTCACGTTTTACTCTTCTttttatattac
ttttctttgtCAATCCCCAAGTCGTATCAGCGAGTTTGTTGGTAATATCA
TCAAATCTTTTCTGAGCATCTTTATACTCTTTATTTGGGTCTACTTCAGC
AAACATATtcttgattttattttcaacaccATAAATGAGATTGTTTGTAA
TCTGGTCTTGCTTTTGTACTATTGATTGATCTTTTTCGTCTGTCTCTAGC
TCTTCACTATCTTCGTTGTCCTCTCCATTCTCTTCTACATTGTCATCTTG
CTCTGGAATACTGTGCTTCTTAGTTTCTTTCAAAGACATATGGTTCAGTG
GCGTAGCAGTTGATAGCTCAGTCTTTTTAATATGATTTCCTCCTCGTTTT
GATAAACCCCAAGGTGTATTTGTCAATTTCATCAGCCTGTCAACGAATGT
GTTTTCAGCGTACCGTCCATCATTTTTACCATCAAGTATGTTATCATAAA
GACTAAGAACAGCTTGCTTTTCATTCGAGAAATGCTTATCCATAGCATTA
CGCTCCATTTCGGCGTAATCAGCTGAAACAATATCTTTGCTGGCTACATC
AGACAAGTTTTTCTCGATATTCTGTTTTTTAGCTACAAGATTTcttttaa
ttttgctttttgTTACACTCCAGGGTCCAGCACCTGTCATTCGTGAAGCT
TGTTTCAAAAAGGCCATTTCAGGGCTTTTATGGTGACCATGTCCATGCTG
TACGTTCTTGAAAAGGTCAACAATGTTATTTGTTTGATCCATGATAGACT
GTTGAACCATCTTGCGTTCATCATCTTGATAAGACTTTGGTAACACATTA
TCAACAGTGGGAATATGTTCACCAGTATCGGAATTAGGTTTTGAATCTTC
TCCACCAACATCTATATCTTCGTGTTCATGGTGGTGACCTAAATCATCTC
TGGAGTTTTTATCAAACTCCTTTCTGAAGTCATTTCCACCATTTATCATC
TTCTGTATCTGTTTCACTGTATCTTTTTCTTTACCAGGATCCATGGTGAA
TTCGATTGGTGCAGGTCGATCAGAGCAACTGGAGCCTTTGTTTCGGTAGC
CAACCTCACTCTTTCTGCAACCAGCGCCTGGGGATTTATGAAATTCGGAT
ACATCAGCGATATGGGTTTCTTTATCTCTTTCTTTACCGTCACGTTGTTG
GAGGCCATAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007136-exon-sc0000074-1491911889:73119..73949 | TCONS_00007136-exon-sc0000074-1491911889:73119..73949 | Clytia hemisphaerica | exon |
| TCONS_00007136-exon-sc0000074-1510915933:73119..73949 | TCONS_00007136-exon-sc0000074-1510915933:73119..73949 | Clytia hemisphaerica | exon |
| TCONS_00007136-exon-sc0000074-1575043694:73119..73949 | TCONS_00007136-exon-sc0000074-1575043694:73119..73949 | Clytia hemisphaerica | exon |
| TCONS_00007136-exon-sc0000074-1491911889:74823..75880 | TCONS_00007136-exon-sc0000074-1491911889:74823..75880 | Clytia hemisphaerica | exon |
| TCONS_00007136-exon-sc0000074-1510915933:74823..75880 | TCONS_00007136-exon-sc0000074-1510915933:74823..75880 | Clytia hemisphaerica | exon |
| TCONS_00007136-exon-sc0000074-1575043694:74823..75880 | TCONS_00007136-exon-sc0000074-1575043694:74823..75880 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:73119..75880 + |
Blast
The following BLAST results are available for this feature:
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