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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007135 ID=TCONS_00007135|Name=TCONS_00007135|organism=Clytia hemisphaerica|type=transcript|length=1719bp
CTCAAGCAGTATAACAAATAAAGCAACACGTAGCTCGTGTCAAACGAAAA
ACAGAGAAAATATGTATAAGtTCATTTTGATGGCGATGTTGCTCACTATT
CTTCACGAAGTCTCTTCAAATGCTATCAGCACCAAATCGAAAGAAGCTTT
GGCGTCAGAGAAGAAGAAGACAACGAAAGTTACAACAAAGAAAACAATAG
CACATGAAGTCATTCATCCTTCGATGCTTGGTGATGACATTGCTGTGCCA
GTGGATATGTTTAATGCTTTCTTCCCATTCCTCCAATATCTTCAAACTAA
AACCAAAAGTTTAATCAATCGGGCACCAGGACATCATAACTCTACAAGTT
CTGGCTCTAAAATAGTACACTTACCAAATGTTGTATTCAAGGCTCTGAAA
CCACTTCTGGAATTATATTTCAAAGAGATTCCAAACCTTTTAAGGCCTCA
AGTGAATGTTGTTGGTAATGGAGCTGGTGAAAAGAATAAAATGAAGGATA
AtcctttttgtgattttgcttTTGATAGTTGTCAGGAATGCCTGGAATGT
ACGGAACAAGTGTGGGGTGTGGAAGATTGCATGTTTTGCTTTCTGAGCTT
TTCTGGTAGTGTCTGCCCCCTCGAACAAtgcttattttaaattttaccat
aaaataatgttaaaatgttaaaatatgtTAATCTAAAAGTGATTAAATTT
TGCGCAggaatttgtaaaaaatattttttgttagtGTAATGATTGATTTC
ACATACAGTATTCCTTTTTAAAGTGGTTGACAATCTACGTTAACAATAtt
gattcaatatttttttcggCTATCAAATTCATAATGAGACTTTCACTTAA
GAATGGGGATCAATAAAGCccttcccagctgacacacaacgttgttttaa
ctattgtttaacgttatatggacgttgtgaacgttatataaacgtcgaaa
caacgttttgtgccagctgggtactcACCGGTTGGTGGaaccttttccct
cagtggggatgaaaatttctatcgaaatcccaatggggacaaaaatccat
tgtttccagctcaaaaattccagcagggatggttttgaagtccaattttt
tccattcaattttcaatggggatataATCATAGGGCAATTTCCCAGCGGG
GCTGaaaatgtagggtattttttccaccggggacgatttttttacctatt
tttccaccgggttGGGGGGTCCACcggatctgtgacacaggggtgtgtac
TCGCCCACCAAGAAGATTATTTCTATCTGGAACCTTTATAGTCTTTGAAT
ATCATATCATATTTCAAACATTGCTGTTAACagtttttaagagttttatA
TAGATAATATTTTTTAGGAAACTTGCAAAAAGTTGAGAAATCTTTACCAA
TTCAAGAAGTGGATATTCACATCGTTCACAGCAGTATTTTTAATTCACTC
AATTGTGCATCTTCTTTTTAACTTTCTGTGAATACTCAAGTATTCTTTGA
AGCTCTGTGGCCAATCCAATCCTTGTAGGGTTTAGATTGTAAACTTTTAC
TATTATTATCATGAATGGGTCCCAGTAATTGAGTATTTTCTAAACATTAA
TGAGTTTATATAAAACACATGTACATAGAtatttcattttcgtttttaaG
TAGGACTGTAAATATTATTCGCCTTAATTTTCTTTAcgaagattacaaaa
aaaattatgtcaaaTGAAA Run BLAST on NCBI protein sequence of TCONS_00007135-protein >TCONS_00007135-protein ID=TCONS_00007135-protein|Name=TCONS_00007135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
SSSITNKATRSSCQTKNRENMYKFILMAMLLTILHEVSSNAISTKSKEAL
ASEKKKTTKVTTKKTIAHEVIHPSMLGDDIAVPVDMFNAFFPFLQYLQTK
TKSLINRAPGHHNSTSSGSKIVHLPNVVFKALKPLLELYFKEIPNLLRPQ
VNVVGNGAGEKNKMKDNPFCDFAFDSCQECLECTEQVWGVEDCMFCFLSF
SGSVCPLEQCLF Run BLAST on NCBI transcript from alignment at sc0000074:8575..11319+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007135 ID=TCONS_00007135|Name=TCONS_00007135|organism=Clytia hemisphaerica|type=transcript|length=2745bp|location=Sequence derived from alignment at sc0000074:8575..11319+ (Clytia hemisphaerica)
CTCAAGCAGTATAACAAATAAAGCAACACGTAGCTCGTGTCAAACGAAAA
ACAGAGAAAATATGTATAAGGTACGTATTCCTTCATCTTCagtaaaaaaa
tgagtaaaatgtaTTTAAGATTTTTGAGATAAAAAAGCATAATGTCTTTC
AGAGGTACTATGCCTTTGGATGACACACCTCCATTTCACAGCCCTGGTTG
AACTTTTTCCCGTAGTGGGGGTAAAAACCACTATCGAAACCGGAATGGAG
AAAATTATAGCGTATTTATCCTAGTGGGGACAAAAGCTAAGTCAAATTTT
ACCGggtatgagacaggggtgtgacgATGCTATACAAACCGCAGTGTTTA
AAAAAACAAGGGTGAATCCGGTGAATCCCCTGCTTACCATTGTCGACCAT
AGGGGTGTGCAGCTGAAGTTCAAAAAATGGACtcgtatttttgaaaaaag
ttccatccTTTCTGCCCAAGTATCCCCCTTTCCCGGGGGTTAATCTTGTA
AACCGGGAAATATTTAGATCTAGAGTCAGCTCCTAGGTGACACAGAATGT
CATAACAAGCAATCTGACGTCTCTGACGTTCaaaaaacgttagatgaacg
ttaaaacaacgcttATGTGCCAGTAGGGCTAAGACGATGGCGTATATTTT
CACACTGACACCCGGTGAGGGGGAAATTAAGGGTCGAGGAAAGCTGGGTA
AATGATTTACGGGCTTCTAAATCCTGATCCTTCAATGACTGCTTTGATAA
AAAGGGGATCCTTACAGagtcttttttctcaaaaatctaattGCTTTTCG
TAAACTTCGCATAAAAATTACGTATAAGGTCAAAAGTATATTAAaatcta
aagttaaaaaaaaataaaactaaagaGCACACGCCCATCAGTTTAGGGGT
AAAAGCTGTAAGCGTACTATTACTACTAGGTGCTATTTTAATGTAGAGAA
CTTACAAAATTCAGAATCCTGtgacaaaaagttaagaaataaAGTGAATg
gtttttgtgaaatatttgtcATCCTTACGTGACATTAGCATtagttcaaa
ataaaatctatatTCTAAATGTTATCGaacattttttctatttcagtTCA
TTTTGATGGCGATGTTGCTCACTATTCTTCACGAAGTCTCTTCAAATGCT
ATCAGCACCAAATCGAAAGAAGCTTTGGCGTCAGAGAAGAAGAAGACAAC
GAAAGTTACAACAAAGAAAACAATAGCACATGAAGTCATTCATCCTTCGA
TGCTTGGTGATGACATTGCTGTGCCAGTGGATATGTTTAATGCTTTCTTC
CCATTCCTCCAATATCTTCAAACTAAAACCAAAAGTTTAATCAATCGGGC
ACCAGGACATCATAACTCTACAAGTTCTGGCTCTAAAATAGTACACTTAC
CAAATGTTGTATTCAAGGCTCTGAAACCACTTCTGGAATTATATTTCAAA
GAGATTCCAAACCTTTTAAGGCCTCAAGTGAATGTTGTTGGTAATGGAGC
TGGTGAAAAGAATAAAATGAAGGATAAtcctttttgtgattttgcttTTG
ATAGTTGTCAGGAATGCCTGGAATGTACGGAACAAGTGTGGGGTGTGGAA
GATTGCATGTTTTGCTTTCTGAGCTTTTCTGGTAGTGTCTGCCCCCTCGA
ACAAtgcttattttaaattttaccataaaataatgttaaaatgttaaaat
atgtTAATCTAAAAGTGATTAAATTTTGCGCAggaatttgtaaaaaatat
tttttgttagtGTAATGATTGATTTCACATACAGTATTCCTTTTTAAAGT
GGTTGACAATCTACGTTAACAATAttgattcaatatttttttcggCTATC
AAATTCATAATGAGACTTTCACTTAAGAATGGGGATCAATAAAGCccttc
ccagctgacacacaacgttgttttaactattgtttaacgttatatggacg
ttgtgaacgttatataaacgtcgaaacaacgttttgtgccagctgggtac
tcACCGGTTGGTGGaaccttttccctcagtggggatgaaaatttctatcg
aaatcccaatggggacaaaaatccattgtttccagctcaaaaattccagc
agggatggttttgaagtccaattttttccattcaattttcaatggggata
taATCATAGGGCAATTTCCCAGCGGGGCTGaaaatgtagggtattttttc
caccggggacgatttttttacctatttttccaccgggttGGGGGGTCCAC
cggatctgtgacacaggggtgtgtacTCGCCCACCAAGAAGATTATTTCT
ATCTGGAACCTTTATAGTCTTTGAATATCATATCATATTTCAAACATTGC
TGTTAACagtttttaagagttttatATAGATAATATTTTTTAGGAAACTT
GCAAAAAGTTGAGAAATCTTTACCAATTCAAGAAGTGGATATTCACATCG
TTCACAGCAGTATTTTTAATTCACTCAATTGTGCATCTTCTTTTTAACTT
TCTGTGAATACTCAAGTATTCTTTGAAGCTCTGTGGCCAATCCAATCCTT
GTAGGGTTTAGATTGTAAACTTTTACTATTATTATCATGAATGGGTCCCA
GTAATTGAGTATTTTCTAAACATTAATGAGTTTATATAAAACACATGTAC
ATAGAtatttcattttcgtttttaaGTAGGACTGTAAATATTATTCGCCT
TAATTTTCTTTAcgaagattacaaaaaaaattatgtcaaaTGAAA Coding sequence (CDS) from alignment at sc0000074:8575..11319+ >TCONS_00007135 ID=TCONS_00007135|Name=TCONS_00007135|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000074:8575..11319+ (Clytia hemisphaerica)
TCAAGCAGTATAACAAATAAAGCAACACGTAGCTCGTGTCAAACGAAAAA
CAGAGAAAATATGTATAAGtTCATTTTGATGGCGATGTTGCTCACTATTC
TTCACGAAGTCTCTTCAAATGCTATCAGCACCAAATCGAAAGAAGCTTTG
GCGTCAGAGAAGAAGAAGACAACGAAAGTTACAACAAAGAAAACAATAGC
ACATGAAGTCATTCATCCTTCGATGCTTGGTGATGACATTGCTGTGCCAG
TGGATATGTTTAATGCTTTCTTCCCATTCCTCCAATATCTTCAAACTAAA
ACCAAAAGTTTAATCAATCGGGCACCAGGACATCATAACTCTACAAGTTC
TGGCTCTAAAATAGTACACTTACCAAATGTTGTATTCAAGGCTCTGAAAC
CACTTCTGGAATTATATTTCAAAGAGATTCCAAACCTTTTAAGGCCTCAA
GTGAATGTTGTTGGTAATGGAGCTGGTGAAAAGAATAAAATGAAGGATAA
tcctttttgtgattttgcttTTGATAGTTGTCAGGAATGCCTGGAATGTA
CGGAACAAGTGTGGGGTGTGGAAGATTGCATGTTTTGCTTTCTGAGCTTT
TCTGGTAGTGTCTGCCCCCTCGAACAAtgcttattttaaTCAAGCAGTAT
AACAAATAAAGCAACACGTAGCTCGTGTCAAACGAAAAACAGAGAAAATA
TGTATAAGtTCATTTTGATGGCGATGTTGCTCACTATTCTTCACGAAGTC
TCTTCAAATGCTATCAGCACCAAATCGAAAGAAGCTTTGGCGTCAGAGAA
GAAGAAGACAACGAAAGTTACAACAAAGAAAACAATAGCACATGAAGTCA
TTCATCCTTCGATGCTTGGTGATGACATTGCTGTGCCAGTGGATATGTTT
AATGCTTTCTTCCCATTCCTCCAATATCTTCAAACTAAAACCAAAAGTTT
AATCAATCGGGCACCAGGACATCATAACTCTACAAGTTCTGGCTCTAAAA
TAGTACACTTACCAAATGTTGTATTCAAGGCTCTGAAACCACTTCTGGAA
TTATATTTCAAAGAGATTCCAAACCTTTTAAGGCCTCAAGTGAATGTTGT
TGGTAATGGAGCTGGTGAAAAGAATAAAATGAAGGATAAtcctttttgtg
attttgcttTTGATAGTTGTCAGGAATGCCTGGAATGTACGGAACAAGTG
TGGGGTGTGGAAGATTGCATGTTTTGCTTTCTGAGCTTTTCTGGTAGTGT
CTGCCCCCTCGAACAAtgcttattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007135-exon-sc0000074-1491911889:8575..8644 | TCONS_00007135-exon-sc0000074-1491911889:8575..8644 | Clytia hemisphaerica | exon |
| TCONS_00007135-exon-sc0000074-1510915933:8575..8644 | TCONS_00007135-exon-sc0000074-1510915933:8575..8644 | Clytia hemisphaerica | exon |
| TCONS_00007135-exon-sc0000074-1575043694:8575..8644 | TCONS_00007135-exon-sc0000074-1575043694:8575..8644 | Clytia hemisphaerica | exon |
| TCONS_00007135-exon-sc0000074-1491911889:9671..11319 | TCONS_00007135-exon-sc0000074-1491911889:9671..11319 | Clytia hemisphaerica | exon |
| TCONS_00007135-exon-sc0000074-1510915933:9671..11319 | TCONS_00007135-exon-sc0000074-1510915933:9671..11319 | Clytia hemisphaerica | exon |
| TCONS_00007135-exon-sc0000074-1575043694:9671..11319 | TCONS_00007135-exon-sc0000074-1575043694:9671..11319 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:8575..11319 + |
Blast
The following BLAST results are available for this feature:
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