TCONS_00007128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007128
Unique NameTCONS_00007128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007128 ID=TCONS_00007128|Name=TCONS_00007128|organism=Clytia hemisphaerica|type=transcript|length=2390bp
AAAAAAAGGCAACTAACGTACAAACGCACGAACattggttaatttatagg
acctccaccggggtaggtccaaaaagccttGTAGGGATTGCCAATGAGTA
AAAACACAGATTGTACAAAGCCCTAGTTGTTTGTGAGCTTCTGTAACTAA
TGTGttccaaacaacaaaagtaTTTCTCTactaaaagtttttgatattga
atatcTTATCCATGAAAATGTATTAACAGCTCCGAAAATGTCTCTTTCTT
TTCAGAAGAAACAAGGAACGCTTTTAATTAACGTCACGAAAGCCCATTCT
TCAGGAACGTGTGAGAAACACTTAAAATTAATgtaaaaaatttccatttc
tgAGAAACATTCAAGGAACGAATGAGGAACGCTTAAAATTAACGTCAGAa
atgtccattcctgaggaacgttcgaggagtagatgaggaatgctaaaaca
aagttttgaaatatccattcctgaggaacgttcgaggaatgcTGAGGAGC
ATTGAGAAATAGCAGAGGAATAGTGAGGAATGGTGATCGGGTTAGTAGTG
GATTTCTCTGCTCACATTTTAGTTTTTCTAGAAAAGCAAGTCTAGAATTG
ATATAATTCCTTTTTAGATTCCTCCTGTATGCATACTTGATAGTCTGCTT
ATCAATTTTACCAACCAAGAACTTtgtccattttgaattttttaattgtt
tagATGAAGATGGAAACACTACCAGAGGAAATCATAAAGCTGATTTTTGA
TTACTGTAAAGTTGAAACTTTAAAAACTATAGCTTGCTGTAACAAGTTTC
TCAAGGAATTAGTGACACCGCATCTTTGGCACACAATATTTGTGCATTTG
CCAATTAAAGAAGATGAAGTTGTTTCAAAGCTTGATAATTTGAAACATGC
CAGAGCATTGACGTTTCACGAAAATAGGAAGAAGGACGATGAAAATGAGG
ACGCAACAATACAAAATTTAACGAGGGTGCTGAATTCATGTAAATCATCT
AGAGTTGAAACAATTATAATACAATGCAAACGTTTTTATTACCacttttt
caatgaaaacatcATTGCGATCTTGAGCACatttaaaaatgttagaaatt
tgaatttaagaCTACATTATCAAGAGATGAATGAAGACGTTGTCTTGTAc
atattgaaattgaaaaacctACGAGAACTTCTAATTCCTAATGTTGTTCT
TATCactaaaagttttgaaaaattggctGAGAGAAATGAACTGCAAAAGC
TGCATATTAACGGCACTGtcaacaaaacaaccaaactGATTGGTCAATGT
ACAAACTTGAAGGCACTGACAATTAACTCGGATAGGTCAGGCCCTGGACA
GAATATTTCCCCTCTATCCTCGCTAATCAATTTGGAATTGTTAGAGTTAA
CCGGTTTTCATTTAGGAAGGAACACCTTGCATAAATTCAGTAGTTCACTG
ACCAATTTAAAACATCTTAAACTGGCTCAAATTTGTTGTCTCACTGATGA
AGATTTCATGAATATCCATCAAATGACATATTTGAATTCCTTAGACATCA
GCCAAAATTCAATTGATAATAAGCTAACACCACTTACCTTGTTCTACCTT
TCCCAAATCAAATCACTAGAGAAGTTGCGCATATCAATGCACACTTGTTT
GCAAAATTTAGATGGAAAGGTCTCTGCTGGCGAAGAAGTCATGTGTTTAA
ATAGAATGCAAAAGTTGCAAAGAATAGAGATAATTGGAGTAATGCCAAAT
GTTGGGTTGATCATAGATTCAATTTTGCAAGATAATAAATGGCTTTTACA
GGAAGGGTTAGAACCAAGTTTATTCATCCTTTCTATTTGATGcagattta
ttttcaattatttttttgtttatatgtATTATACTAGTTCACAATTTTTT
CTCTACTATAGGAAACTCTACCAGTTATGGTTTTATTTtggaagtttttt
caaaaatattttaaatgatgATATCTCACTCACAatcatcttttcaacaa
gcataaGATTATACAATCTAATTCAAACAAAAAGTCATGTATGTTTGCAA
TTTAGCTGACAATTCGAAAAGGACTTCAGTTTCGGAGGAATGATCAATTT
AGAAGACCaagctttcttttttctttctcgttTGATATTGCTTTTATAGA
CTGTTTCTAATTTTtcgtctttgtttatttttattgtgattagtatttta
gaaacatttaacGCTTATGATAGTATCAATtatcatagtgcggaaagggt
tctgaccccccccttcttaaataatcccccccttcttggcatccctccaa
cctttaaaaatgcctatcccccaagggtttcAGGCTAAAtcttttatggt
aaaaagggaagggaaacagtaaagaaaaattaagtctggc
Run BLAST on NCBI

protein sequence of TCONS_00007128-protein

>TCONS_00007128-protein ID=TCONS_00007128-protein|Name=TCONS_00007128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MKMETLPEEIIKLIFDYCKVETLKTIACCNKFLKELVTPHLWHTIFVHLP
IKEDEVVSKLDNLKHARALTFHENRKKDDENEDATIQNLTRVLNSCKSSR
VETIIIQCKRFYYHFFNENIIAILSTFKNVRNLNLRLHYQEMNEDVVLYI
LKLKNLRELLIPNVVLITKSFEKLAERNELQKLHINGTVNKTTKLIGQCT
NLKALTINSDRSGPGQNISPLSSLINLELLELTGFHLGRNTLHKFSSSLT
NLKHLKLAQICCLTDEDFMNIHQMTYLNSLDISQNSIDNKLTPLTLFYLS
QIKSLEKLRISMHTCLQNLDGKVSAGEEVMCLNRMQKLQRIEIIGVMPNV
GLIIDSILQDNKWLLQEGLEPSLFILSI
Run BLAST on NCBI

transcript from alignment at sc0000073:621752..624141

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007128 ID=TCONS_00007128|Name=TCONS_00007128|organism=Clytia hemisphaerica|type=transcript|length=2390bp|location=Sequence derived from alignment at sc0000073:621752..624141 (Clytia hemisphaerica)
gccagacttaatttttctttactgtttcccttccctttttaccataaaag
aTTTAGCCTgaaacccttgggggataggcatttttaaaggttggagggat
gccaagaagggggggattatttaagaaggggggggtcagaaccctttccg
cactatgataATTGATACTATCATAAGCgttaaatgtttctaaaatacta
atcacaataaaaataaacaaagacgaAAAATTAGAAACAGTCTATAAAAG
CAATATCAaacgagaaagaaaaaagaaagcttGGTCTTCTAAATTGATCA
TTCCTCCGAAACTGAAGTCCTTTTCGAATTGTCAGCTAAATTGCAAACAT
ACATGACTTTTTGTTTGAATTAGATTGTATAATCttatgcttgttgaaaa
gatgatTGTGAGTGAGATATcatcatttaaaatatttttgaaaaaacttc
caAAATAAAACCATAACTGGTAGAGTTTCCTATAGTAGAGAAAAAATTGT
GAACTAGTATAATacatataaacaaaaaaataattgaaaataaatctgCA
TCAAATAGAAAGGATGAATAAACTTGGTTCTAACCCTTCCTGTAAAAGCC
ATTTATTATCTTGCAAAATTGAATCTATGATCAACCCAACATTTGGCATT
ACTCCAATTATCTCTATTCTTTGCAACTTTTGCATTCTATTTAAACACAT
GACTTCTTCGCCAGCAGAGACCTTTCCATCTAAATTTTGCAAACAAGTGT
GCATTGATATGCGCAACTTCTCTAGTGATTTGATTTGGGAAAGGTAGAAC
AAGGTAAGTGGTGTTAGCTTATTATCAATTGAATTTTGGCTGATGTCTAA
GGAATTCAAATATGTCATTTGATGGATATTCATGAAATCTTCATCAGTGA
GACAACAAATTTGAGCCAGTTTAAGATGTTTTAAATTGGTCAGTGAACTA
CTGAATTTATGCAAGGTGTTCCTTCCTAAATGAAAACCGGTTAACTCTAA
CAATTCCAAATTGATTAGCGAGGATAGAGGGGAAATATTCTGTCCAGGGC
CTGACCTATCCGAGTTAATTGTCAGTGCCTTCAAGTTTGTACATTGACCA
ATCagtttggttgttttgttgaCAGTGCCGTTAATATGCAGCTTTTGCAG
TTCATTTCTCTCagccaatttttcaaaacttttagtGATAAGAACAACAT
TAGGAATTAGAAGTTCTCGTaggtttttcaatttcaatatgTACAAGACA
ACGTCTTCATTCATCTCTTGATAATGTAGtcttaaattcaaatttctaac
atttttaaatGTGCTCAAGATCGCAATgatgttttcattgaaaaagtGGT
AATAAAAACGTTTGCATTGTATTATAATTGTTTCAACTCTAGATGATTTA
CATGAATTCAGCACCCTCGTTAAATTTTGTATTGTTGCGTCCTCATTTTC
ATCGTCCTTCTTCCTATTTTCGTGAAACGTCAATGCTCTGGCATGTTTCA
AATTATCAAGCTTTGAAACAACTTCATCTTCTTTAATTGGCAAATGCACA
AATATTGTGTGCCAAAGATGCGGTGTCACTAATTCCTTGAGAAACTTGTT
ACAGCAAGCTATAGTTTTTAAAGTTTCAACTTTACAGTAATCAAAAATCA
GCTTTATGATTTCCTCTGGTAGTGTTTCCATCTTCATctaaacaattaaa
aaattcaaaatggacaAAGTTCTTGGTTGGTAAAATTGATAAGCAGACTA
TCAAGTATGCATACAGGAGGAATCTAAAAAGGAATTATATCAATTCTAGA
CTTGCTTTTCTAGAAAAACTAAAATGTGAGCAGAGAAATCCACTACTAAC
CCGATCACCATTCCTCACTATTCCTCTGCTATTTCTCAATGCTCCTCAgc
attcctcgaacgttcctcaggaatggatatttcaaaactttgttttagca
ttcctcatctactcctcgaacgttcctcaggaatggacattTCTGACGTT
AATTTTAAGCGTTCCTCATTCGTTCCTTGAATGTTTCTcagaaatggaaa
ttttttacATTAATTTTAAGTGTTTCTCACACGTTCCTGAAGAATGGGCT
TTCGTGACGTTAATTAAAAGCGTTCCTTGTTTCTTCTGAAAAGAAAGAGA
CATTTTCGGAGCTGTTAATACATTTTCATGGATAAgatattcaatatcaa
aaacttttagtAGAGAAAtacttttgttgtttggaaCACATTAGTTACAG
AAGCTCACAAACAACTAGGGCTTTGTACAATCTGTGTTTTTACTCATTGG
CAATCCCTACaaggctttttggacctaccccggtggaggtcctataaatt
aaccaatGTTCGTGCGTTTGTACGTTAGTTGCCTTTTTTT

Coding sequence (CDS) from alignment at sc0000073:621752..624141

>TCONS_00007128 ID=TCONS_00007128|Name=TCONS_00007128|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at sc0000073:621752..624141 (Clytia hemisphaerica)
TCAAATAGAAAGGATGAATAAACTTGGTTCTAACCCTTCCTGTAAAAGCC
ATTTATTATCTTGCAAAATTGAATCTATGATCAACCCAACATTTGGCATT
ACTCCAATTATCTCTATTCTTTGCAACTTTTGCATTCTATTTAAACACAT
GACTTCTTCGCCAGCAGAGACCTTTCCATCTAAATTTTGCAAACAAGTGT
GCATTGATATGCGCAACTTCTCTAGTGATTTGATTTGGGAAAGGTAGAAC
AAGGTAAGTGGTGTTAGCTTATTATCAATTGAATTTTGGCTGATGTCTAA
GGAATTCAAATATGTCATTTGATGGATATTCATGAAATCTTCATCAGTGA
GACAACAAATTTGAGCCAGTTTAAGATGTTTTAAATTGGTCAGTGAACTA
CTGAATTTATGCAAGGTGTTCCTTCCTAAATGAAAACCGGTTAACTCTAA
CAATTCCAAATTGATTAGCGAGGATAGAGGGGAAATATTCTGTCCAGGGC
CTGACCTATCCGAGTTAATTGTCAGTGCCTTCAAGTTTGTACATTGACCA
ATCagtttggttgttttgttgaCAGTGCCGTTAATATGCAGCTTTTGCAG
TTCATTTCTCTCagccaatttttcaaaacttttagtGATAAGAACAACAT
TAGGAATTAGAAGTTCTCGTaggtttttcaatttcaatatgTACAAGACA
ACGTCTTCATTCATCTCTTGATAATGTAGtcttaaattcaaatttctaac
atttttaaatGTGCTCAAGATCGCAATgatgttttcattgaaaaagtGGT
AATAAAAACGTTTGCATTGTATTATAATTGTTTCAACTCTAGATGATTTA
CATGAATTCAGCACCCTCGTTAAATTTTGTATTGTTGCGTCCTCATTTTC
ATCGTCCTTCTTCCTATTTTCGTGAAACGTCAATGCTCTGGCATGTTTCA
AATTATCAAGCTTTGAAACAACTTCATCTTCTTTAATTGGCAAATGCACA
AATATTGTGTGCCAAAGATGCGGTGTCACTAATTCCTTGAGAAACTTGTT
ACAGCAAGCTATAGTTTTTAAAGTTTCAACTTTACAGTAATCAAAAATCA
GCTTTATGATTTCCTCTGGTAGTGTTTCCATCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003996XLOC_003996Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007128-proteinTCONS_00007128-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007128-exon-sc0000073-1491911889:621752..624141TCONS_00007128-exon-sc0000073-1491911889:621752..624141Clytia hemisphaericaexon
TCONS_00007128-exon-sc0000073-1510915933:621752..624141TCONS_00007128-exon-sc0000073-1510915933:621752..624141Clytia hemisphaericaexon
TCONS_00007128-exon-sc0000073-1575043694:621752..624141TCONS_00007128-exon-sc0000073-1575043694:621752..624141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:621752..624141 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23637	1.33846	0.82898	1.31685	5.33115	3.74616	3.37102	4.24863	2.13879	1.8721	1.87876	1.17032	1.83914	1.83145	1.25624	1.86385	2.04222	1.5021	1.69596	1.10385	1.87178	1.72649	1.19536	1.37348	1.95615	3.14894	1.49443	1.38096	1.39044	1.39813
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top