TCONS_00007127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007127
Unique NameTCONS_00007127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007127 ID=TCONS_00007127|Name=TCONS_00007127|organism=Clytia hemisphaerica|type=transcript|length=1488bp
TGATTATCtctttgaaaataataatttcaatgTTTCTTCATTGACCATTA
ACAGATTTTCCATTATACatgtttcaaaaatcttttctctTGTTTTTAGA
AATCAACATGAATATCGCATCAAAATTAATAAGatactcaaaaaataaaa
atatttcaagcctTATCCCAAGACATGCTTCTACTTTTACTTATGTCCCT
GAAGCGCCCCCAGTTGCTGGGGAAACAAAAAAGATCAACTTTTTCCAAGC
ATTAACAGATGCAATGGACATTGCAATGGGCTCAGATCAATCTGCATTGA
TCTTTGGTGAAGACGTTCATTTTGGTGGTGTCTTCAGATGTACCATGGGT
TTAGCCGACAAATATGGCAAAGAGCGTGTATTCAATACACCATTGTGTGA
GCAAGGCATTGTTGGATTTGGTATTGGTTTGGCAACTGCAGGAGCCACTG
CAATTGCTGAAGTCCAATTTGCGGATTATATTTTCCCTGCTTTTGACCAA
ATTGTAAATGAAGCTGCAAAATATAGATACCGATCTGGCAATTTATTTGA
TTGTGGATCACTCACAATTCGTTCACCATGTGGTGCTGTCGGCCATGGTG
CATTATATCATTCTCAAAGTCCTGAAGCTTATTTTGCTCATACTCCTGGC
ATCAAAGTTGTTGTCCCAAGAGGACCTAGCCAGGCTAAAGGGTTATTATT
AGCATCAATCAGAGATAAAAACCCAGTTGTTTTCTTGGAACCAAAAATTT
TGTATCGACAAGCAGTTGAGGAGGTTCCAACAGGTGATTATGAATTGCCA
CTATCCAAAGCAGAGGTAGTGGTCCCTGGATCAGATGTCACCATCATTGC
TTGGGGAACACAAGTACAGGTTGTACGTGAAGTCGGCCAAATGGCAAAAG
AGAAGTTTGGTGTCAATTGTGAAATTATTGATCTCCGTACTATCTTGCCT
TGGGATGAAGAAACCGTTATTGATTCAGTTTTAAAAACAGGACGGTTAAT
TATCGCCCATGAAGCTCCATTGACGGGTGGTTTTGCGGGTGAGATTGCCA
GCACCATACAagagaaatgttttttgaatttgGAAGCACCTATTCAACGT
GTTTGTGGTATTGACACACCCTTTCCACACGTTTTTGAGCCATTTTATTT
ACCTGATAAATTCAAATGTTTAGAAGCTGTCAGAAAGgttattgaatttt
aaatttggctttatttttaaaaactgtTATCCCTTAGAATACAATcacaa
atttttattatttgtaattcttttttaggaaaaatgaaatttttagaaaa
tttaactCTGGTGCGTGGCCCCTACTTTCAGTCATTATTTGATAATGTCA
GTGGAAAATTAGCAAATTATGATGAGCCAGTCTTGTCTTTCTCTTCTAAc
tcaatatttatatttattttagaCGTATTTTGTAATTACATCAATAGAAG
AAAATTCTTTAGGCGGTTCAAAAAACCGTGTTTTCTAC
Run BLAST on NCBI

protein sequence of TCONS_00007127-protein

>TCONS_00007127-protein ID=TCONS_00007127-protein|Name=TCONS_00007127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MFQKSFLLFLEINMNIASKLIRYSKNKNISSLIPRHASTFTYVPEAPPVA
GETKKINFFQALTDAMDIAMGSDQSALIFGEDVHFGGVFRCTMGLADKYG
KERVFNTPLCEQGIVGFGIGLATAGATAIAEVQFADYIFPAFDQIVNEAA
KYRYRSGNLFDCGSLTIRSPCGAVGHGALYHSQSPEAYFAHTPGIKVVVP
RGPSQAKGLLLASIRDKNPVVFLEPKILYRQAVEEVPTGDYELPLSKAEV
VVPGSDVTIIAWGTQVQVVREVGQMAKEKFGVNCEIIDLRTILPWDEETV
IDSVLKTGRLIIAHEAPLTGGFAGEIASTIQEKCFLNLEAPIQRVCGIDT
PFPHVFEPFYLPDKFKCLEAVRKVIEF
Run BLAST on NCBI

transcript from alignment at sc0000073:618390..619877

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007127 ID=TCONS_00007127|Name=TCONS_00007127|organism=Clytia hemisphaerica|type=transcript|length=1488bp|location=Sequence derived from alignment at sc0000073:618390..619877 (Clytia hemisphaerica)
GTAGAAAACACGGTTTTTTGAACCGCCTAAAGAATTTTCTTCTATTGATG
TAATTACAAAATACGtctaaaataaatataaatattgagTTAGAAGAGAA
AGACAAGACTGGCTCATCATAATTTGCTAATTTTCCACTGACATTATCAA
ATAATGACTGAAAGTAGGGGCCACGCACCAGagttaaattttctaaaaat
ttcatttttcctaaaaaagaattacaaataataaaaatttgtgATTGTAT
TCTAAGGGATAacagtttttaaaaataaagccaaatttaaaattcaataa
cCTTTCTGACAGCTTCTAAACATTTGAATTTATCAGGTAAATAAAATGGC
TCAAAAACGTGTGGAAAGGGTGTGTCAATACCACAAACACGTTGAATAGG
TGCTTCcaaattcaaaaaacatttctctTGTATGGTGCTGGCAATCTCAC
CCGCAAAACCACCCGTCAATGGAGCTTCATGGGCGATAATTAACCGTCCT
GTTTTTAAAACTGAATCAATAACGGTTTCTTCATCCCAAGGCAAGATAGT
ACGGAGATCAATAATTTCACAATTGACACCAAACTTCTCTTTTGCCATTT
GGCCGACTTCACGTACAACCTGTACTTGTGTTCCCCAAGCAATGATGGTG
ACATCTGATCCAGGGACCACTACCTCTGCTTTGGATAGTGGCAATTCATA
ATCACCTGTTGGAACCTCCTCAACTGCTTGTCGATACAAAATTTTTGGTT
CCAAGAAAACAACTGGGTTTTTATCTCTGATTGATGCTAATAATAACCCT
TTAGCCTGGCTAGGTCCTCTTGGGACAACAACTTTGATGCCAGGAGTATG
AGCAAAATAAGCTTCAGGACTTTGAGAATGATATAATGCACCATGGCCGA
CAGCACCACATGGTGAACGAATTGTGAGTGATCCACAATCAAATAAATTG
CCAGATCGGTATCTATATTTTGCAGCTTCATTTACAATTTGGTCAAAAGC
AGGGAAAATATAATCCGCAAATTGGACTTCAGCAATTGCAGTGGCTCCTG
CAGTTGCCAAACCAATACCAAATCCAACAATGCCTTGCTCACACAATGGT
GTATTGAATACACGCTCTTTGCCATATTTGTCGGCTAAACCCATGGTACA
TCTGAAGACACCACCAAAATGAACGTCTTCACCAAAGATCAATGCAGATT
GATCTGAGCCCATTGCAATGTCCATTGCATCTGTTAATGCTTGGAAAAAG
TTGATCTTTTTTGTTTCCCCAGCAACTGGGGGCGCTTCAGGGACATAAGT
AAAAGTAGAAGCATGTCTTGGGATAaggcttgaaatatttttattttttg
agtatCTTATTAATTTTGATGCGATATTCATGTTGATTTCTAAAAACAag
agaaaagatttttgaaacatGTATAATGGAAAATCTGTTAATGGTCAATG
AAGAAAcattgaaattattattttcaaagaGATAATCA

Coding sequence (CDS) from alignment at sc0000073:618390..619877

>TCONS_00007127 ID=TCONS_00007127|Name=TCONS_00007127|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000073:618390..619877 (Clytia hemisphaerica)
ttaaaattcaataacCTTTCTGACAGCTTCTAAACATTTGAATTTATCAG
GTAAATAAAATGGCTCAAAAACGTGTGGAAAGGGTGTGTCAATACCACAA
ACACGTTGAATAGGTGCTTCcaaattcaaaaaacatttctctTGTATGGT
GCTGGCAATCTCACCCGCAAAACCACCCGTCAATGGAGCTTCATGGGCGA
TAATTAACCGTCCTGTTTTTAAAACTGAATCAATAACGGTTTCTTCATCC
CAAGGCAAGATAGTACGGAGATCAATAATTTCACAATTGACACCAAACTT
CTCTTTTGCCATTTGGCCGACTTCACGTACAACCTGTACTTGTGTTCCCC
AAGCAATGATGGTGACATCTGATCCAGGGACCACTACCTCTGCTTTGGAT
AGTGGCAATTCATAATCACCTGTTGGAACCTCCTCAACTGCTTGTCGATA
CAAAATTTTTGGTTCCAAGAAAACAACTGGGTTTTTATCTCTGATTGATG
CTAATAATAACCCTTTAGCCTGGCTAGGTCCTCTTGGGACAACAACTTTG
ATGCCAGGAGTATGAGCAAAATAAGCTTCAGGACTTTGAGAATGATATAA
TGCACCATGGCCGACAGCACCACATGGTGAACGAATTGTGAGTGATCCAC
AATCAAATAAATTGCCAGATCGGTATCTATATTTTGCAGCTTCATTTACA
ATTTGGTCAAAAGCAGGGAAAATATAATCCGCAAATTGGACTTCAGCAAT
TGCAGTGGCTCCTGCAGTTGCCAAACCAATACCAAATCCAACAATGCCTT
GCTCACACAATGGTGTATTGAATACACGCTCTTTGCCATATTTGTCGGCT
AAACCCATGGTACATCTGAAGACACCACCAAAATGAACGTCTTCACCAAA
GATCAATGCAGATTGATCTGAGCCCATTGCAATGTCCATTGCATCTGTTA
ATGCTTGGAAAAAGTTGATCTTTTTTGTTTCCCCAGCAACTGGGGGCGCT
TCAGGGACATAAGTAAAAGTAGAAGCATGTCTTGGGATAaggcttgaaat
atttttattttttgagtatCTTATTAATTTTGATGCGATATTCATGTTGA
TTTCTAAAAACAagagaaaagatttttgaaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003995XLOC_003995Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007127-proteinTCONS_00007127-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007127-exon-sc0000073-1491911889:618390..619877TCONS_00007127-exon-sc0000073-1491911889:618390..619877Clytia hemisphaericaexon
TCONS_00007127-exon-sc0000073-1510915933:618390..619877TCONS_00007127-exon-sc0000073-1510915933:618390..619877Clytia hemisphaericaexon
TCONS_00007127-exon-sc0000073-1575043694:618390..619877TCONS_00007127-exon-sc0000073-1575043694:618390..619877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:618390..619877 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
135.143	141.983	76.1623	52.666	119.067	91.0732	86.0534	84.3683	75.4306	83.7335	45.6673	36.8922	19.8871	14.9245	31.3758	36.6629	63.282	44.7567	10.5268	15.0576	29.1794	29.8259	76.5219	70.9863	20.9068	21.4762	63.4047	39.3744	45.3196	44.0405
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005475Transketolase-like_Pyr-bd
IPR033248Transketolase_C
IPR009014Transketo_C/PFOR_II
IPR029061THDP-binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00007127 vs. Swiss-Prot (Human)
Match: ODBB (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 510.76 bits (1314), Expect = 1.796e-178
Identity = 249/344 (72.38%), Postives = 296/344 (86.05%), Query Frame = 3 
Query:  171 RHASTFTYVPEAPPVA-GETKKINFFQALTDAMDIAMGSDQSALIFGEDVHFGGVFRCTMGLADKYGKERVFNTPLCEQGIVXXXXXXXXXXXXXXXEVQFADYIFPAFDQIVNEAAKYRYRSGNLFDCGSLTIRSPCGAVGHGALYHSQSPEAYFAHTPGIKVVVPRGPSQAKGLLLASIRDKNPVVFLEPKILYRQAVEEVPTGDYELPLSKAEVVVPGSDVTIIAWGTQVQVVREVGQMAKEKFGVNCEIIDLRTILPWDEETVIDSVLKTGRLIIAHEAPLTGGFAGEIASTIQEKCFLNLEAPIQRVCGIDTPFPHVFEPFYLPDKFKCLEAVRKVIEF 1199
            R  + FT+ P+  P   G+T+K+N FQ++T A+D ++  D +A+IFGEDV FGGVFRCT+GL DKYGK+RVFNTPLCEQGIVGFGIG+A  GATAIAE+QFADYIFPAFDQIVNEAAKYRYRSG+LF+CGSLTIRSP G VGHGALYHSQSPEA+FAH PGIKVV+PR P QAKGLLL+ I DKNP +F EPKILYR A EEVP   Y +PLS+AEV+  GSDVT++AWGTQV V+REV  MAKEK GV+CE+IDLRTI+PWD +T+  SV+KTGRL+I+HEAPLTGGFA EI+ST+QE+CFLNLEAPI RVCG DTPFPH+FEPFY+PDK+KC +A+RK+I +
Sbjct:   49 RQVAHFTFQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 392
The following BLAST results are available for this feature:
BLAST of TCONS_00007127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ODBB1.796e-17872.382-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
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