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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007126 ID=TCONS_00007126|Name=TCONS_00007126|organism=Clytia hemisphaerica|type=transcript|length=1020bp
GGAGAACACACTGGAATACCTGATCGTTGAGTCGACTTTATTTTTCACAG
CCATCGTTCTACACGTTATAGCTATCTTTATCCTCCGGAAAACAAACGAA
GATTTCATTTTTACAAAAGTTCAAAAGATCTTTCTCATCAATTTAAGCAT
CAATGagattttttcatcattttctcaTTGCCTTGGTAAAGTGGCGATTG
TGTATTTTCCAGAACAGCGCACGGGTTCCAAATAttacattttctttgaa
atcacCATGGGAACACTGCTTCCAATCTGGTATATGTTGATCATGTTGGT
GATCACGGTTGACCGATTCTTAGCAGTCTATTTGAATTTAAGATACCATC
TACTAGTGACTCAACGCAAAGTCAAAATACTTCTCTATATTTTGCCTGTG
GTATCTATAATTGTGACAGGGGTGTTAAATTTTGTTATTAAGGACAATTC
ATCATTGGTTGGTCTTGACAACACGCTGACGGTATTCCGCATGGCTCCCG
TATTTGACGTCATCTGTTTGCTAGCGTTTTGTATGACGTACGGTTATTTG
TTTTATCAGCTACGTAAGAAAAGAAGAACAACTTCAGTCACCGAGAAAGA
CAACACTCAAACGAAAATTAAACATAAATTCTTCTTCCCGTTTCTGCTGA
TTCTATCTTTCATCTTACTTTGGATGTTACCGAACTGGATTCACTATTCA
TACTTTGGTTTTGGAGGTTCCATTCCCGCCTCTTTTCACTGGGCGGTGGA
TTTGTGTTATCCTTTGGCGTTCATATGTGACGCCTTCATTTACATTTTCT
CTTCACCCAAAGTTCGAAACaaagtaaaaagatttttgaacagACATTAG
CTTTTGATTAGCCTGCAAGCGTGATGATAACACATTGTGCATATAATACA
TAAACGTAATCTCTTCCCTATAATAAGACATAGCTTACACTAGAAATGCC
ACCGTtctaataaatattttgatgttcCAATATTATTTACAGAACTATAC
AGCCTATTACGCTCGCTTCg Run BLAST on NCBI protein sequence of TCONS_00007126-protein >TCONS_00007126-protein ID=TCONS_00007126-protein|Name=TCONS_00007126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
ENTLEYLIVESTLFFTAIVLHVIAIFILRKTNEDFIFTKVQKIFLINLSI
NEIFSSFSHCLGKVAIVYFPEQRTGSKYYIFFEITMGTLLPIWYMLIMLV
ITVDRFLAVYLNLRYHLLVTQRKVKILLYILPVVSIIVTGVLNFVIKDNS
SLVGLDNTLTVFRMAPVFDVICLLAFCMTYGYLFYQLRKKRRTTSVTEKD
NTQTKIKHKFFFPFLLILSFILLWMLPNWIHYSYFGFGGSIPASFHWAVD
LCYPLAFICDAFIYIFSSPKVRNKVKRFLNRH Run BLAST on NCBI transcript from alignment at sc0000073:545175..546194 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007126 ID=TCONS_00007126|Name=TCONS_00007126|organism=Clytia hemisphaerica|type=transcript|length=1020bp|location=Sequence derived from alignment at sc0000073:545175..546194 (Clytia hemisphaerica)
cGAAGCGAGCGTAATAGGCTGTATAGTTCTGTAAATAATATTGgaacatc
aaaatatttattagaACGGTGGCATTTCTAGTGTAAGCTATGTCTTATTA
TAGGGAAGAGATTACGTTTATGTATTATATGCACAATGTGTTATCATCAC
GCTTGCAGGCTAATCAAAAGCTAATGTctgttcaaaaatctttttacttt
GTTTCGAACTTTGGGTGAAGAGAAAATGTAAATGAAGGCGTCACATATGA
ACGCCAAAGGATAACACAAATCCACCGCCCAGTGAAAAGAGGCGGGAATG
GAACCTCCAAAACCAAAGTATGAATAGTGAATCCAGTTCGGTAACATCCA
AAGTAAGATGAAAGATAGAATCAGCAGAAACGGGAAGAAGAATTTATGTT
TAATTTTCGTTTGAGTGTTGTCTTTCTCGGTGACTGAAGTTGTTCTTCTT
TTCTTACGTAGCTGATAAAACAAATAACCGTACGTCATACAAAACGCTAG
CAAACAGATGACGTCAAATACGGGAGCCATGCGGAATACCGTCAGCGTGT
TGTCAAGACCAACCAATGATGAATTGTCCTTAATAACAAAATTTAACACC
CCTGTCACAATTATAGATACCACAGGCAAAATATAGAGAAGTATTTTGAC
TTTGCGTTGAGTCACTAGTAGATGGTATCTTAAATTCAAATAGACTGCTA
AGAATCGGTCAACCGTGATCACCAACATGATCAACATATACCAGATTGGA
AGCAGTGTTCCCATGgtgatttcaaagaaaatgtaaTATTTGGAACCCGT
GCGCTGTTCTGGAAAATACACAATCGCCACTTTACCAAGGCAAtgagaaa
atgatgaaaaaatctCATTGATGCTTAAATTGATGAGAAAGATCTTTTGA
ACTTTTGTAAAAATGAAATCTTCGTTTGTTTTCCGGAGGATAAAGATAGC
TATAACGTGTAGAACGATGGCTGTGAAAAATAAAGTCGACTCAACGATCA
GGTATTCCAGTGTGTTCTCC Coding sequence (CDS) from alignment at sc0000073:545175..546194 >TCONS_00007126 ID=TCONS_00007126|Name=TCONS_00007126|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0000073:545175..546194 (Clytia hemisphaerica)
CTAATGTctgttcaaaaatctttttactttGTTTCGAACTTTGGGTGAAG
AGAAAATGTAAATGAAGGCGTCACATATGAACGCCAAAGGATAACACAAA
TCCACCGCCCAGTGAAAAGAGGCGGGAATGGAACCTCCAAAACCAAAGTA
TGAATAGTGAATCCAGTTCGGTAACATCCAAAGTAAGATGAAAGATAGAA
TCAGCAGAAACGGGAAGAAGAATTTATGTTTAATTTTCGTTTGAGTGTTG
TCTTTCTCGGTGACTGAAGTTGTTCTTCTTTTCTTACGTAGCTGATAAAA
CAAATAACCGTACGTCATACAAAACGCTAGCAAACAGATGACGTCAAATA
CGGGAGCCATGCGGAATACCGTCAGCGTGTTGTCAAGACCAACCAATGAT
GAATTGTCCTTAATAACAAAATTTAACACCCCTGTCACAATTATAGATAC
CACAGGCAAAATATAGAGAAGTATTTTGACTTTGCGTTGAGTCACTAGTA
GATGGTATCTTAAATTCAAATAGACTGCTAAGAATCGGTCAACCGTGATC
ACCAACATGATCAACATATACCAGATTGGAAGCAGTGTTCCCATGgtgat
ttcaaagaaaatgtaaTATTTGGAACCCGTGCGCTGTTCTGGAAAATACA
CAATCGCCACTTTACCAAGGCAAtgagaaaatgatgaaaaaatctCATTG
ATGCTTAAATTGATGAGAAAGATCTTTTGAACTTTTGTAAAAATGAAATC
TTCGTTTGTTTTCCGGAGGATAAAGATAGCTATAACGTGTAGAACGATGG
CTGTGAAAAATAAAGTCGACTCAACGATCAGGTATTCCAGTGTGTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007126-exon-sc0000073-1491911889:545175..546194 | TCONS_00007126-exon-sc0000073-1491911889:545175..546194 | Clytia hemisphaerica | exon |
| TCONS_00007126-exon-sc0000073-1510915933:545175..546194 | TCONS_00007126-exon-sc0000073-1510915933:545175..546194 | Clytia hemisphaerica | exon |
| TCONS_00007126-exon-sc0000073-1575043694:545175..546194 | TCONS_00007126-exon-sc0000073-1575043694:545175..546194 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:545175..546194 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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