TCONS_00007125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007125
Unique NameTCONS_00007125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007125 ID=TCONS_00007125|Name=TCONS_00007125|organism=Clytia hemisphaerica|type=transcript|length=575bp
CACAGAAGCGTGTGTTTTACTTTACAACTCCAACATGCTCTTGGTTGATC
AACATTAAACTTTACAAAAGACTGAATCCATCTAAAGCAAAGCGAGAAAA
GTAACTTGAATCTTGAATCAACTACAAATTTGATCACACGGATTTacgtt
atttaaaaaaaaaatacaccgACAAGATATTTTATGATTCTTTTGATTAA
GGAAGGACATTGAAGCGTGAAACCGACACGGAACCGCGCACACCACGCAC
AATATGGATCACGATCTGAGGATTTTACAATTTATTTTCCTTCCTGTTGC
TATCGTTCTTCATGTCACGGCTTTGATGGTCCTTCGAAAAACAAATGAAG
ATtttgttttcaccaaaatacaaAAGATGTTTCTCATCAACCTCAGTGTT
CTCGaaatatttttgtcgatttcGTACGCAGCATTGAAAATACTTAATTT
GTACCCTGGTTACAGAGGATCAAAAACACATTTCATAATGATGGTATGGG
AAGGGTCATACCTGGCTACTTGGTACATGCTGCTCATGTTGGTGATAACG
GTCGACAGATTTTTGGCTGTCTATC
Run BLAST on NCBI

protein sequence of TCONS_00007125-protein

>TCONS_00007125-protein ID=TCONS_00007125-protein|Name=TCONS_00007125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MDHDLRILQFIFLPVAIVLHVTALMVLRKTNEDFVFTKIQKMFLINLSVL
EIFLSISYAALKILNLYPGYRGSKTHFIMMVWEGSYLATWYMLLMLVITV
DRFLAVY
Run BLAST on NCBI

transcript from alignment at sc0000073:544201..544775

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007125 ID=TCONS_00007125|Name=TCONS_00007125|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at sc0000073:544201..544775 (Clytia hemisphaerica)
GATAGACAGCCAAAAATCTGTCGACCGTTATCACCAACATGAGCAGCATG
TACCAAGTAGCCAGGTATGACCCTTCCCATACCATCATTATGAAATGTGT
TTTTGATCCTCTGTAACCAGGGTACAAATTAAGTATTTTCAATGCTGCGT
ACgaaatcgacaaaaatatttCGAGAACACTGAGGTTGATGAGAAACATC
TTttgtattttggtgaaaacaaaATCTTCATTTGTTTTTCGAAGGACCAT
CAAAGCCGTGACATGAAGAACGATAGCAACAGGAAGGAAAATAAATTGTA
AAATCCTCAGATCGTGATCCATATTGTGCGTGGTGTGCGCGGTTCCGTGT
CGGTTTCACGCTTCAATGTCCTTCCTTAATCAAAAGAATCATAAAATATC
TTGTcggtgtattttttttttaaataacgtAAATCCGTGTGATCAAATTT
GTAGTTGATTCAAGATTCAAGTTACTTTTCTCGCTTTGCTTTAGATGGAT
TCAGTCTTTTGTAAAGTTTAATGTTGATCAACCAAGAGCATGTTGGAGTT
GTAAAGTAAAACACACGCTTCTGTG

Coding sequence (CDS) from alignment at sc0000073:544201..544775

>TCONS_00007125 ID=TCONS_00007125|Name=TCONS_00007125|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000073:544201..544775 (Clytia hemisphaerica)
ATAGACAGCCAAAAATCTGTCGACCGTTATCACCAACATGAGCAGCATGT
ACCAAGTAGCCAGGTATGACCCTTCCCATACCATCATTATGAAATGTGTT
TTTGATCCTCTGTAACCAGGGTACAAATTAAGTATTTTCAATGCTGCGTA
CgaaatcgacaaaaatatttCGAGAACACTGAGGTTGATGAGAAACATCT
TttgtattttggtgaaaacaaaATCTTCATTTGTTTTTCGAAGGACCATC
AAAGCCGTGACATGAAGAACGATAGCAACAGGAAGGAAAATAAATTGTAA
AATCCTCAGATCGTGATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003993XLOC_003993Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007125-proteinTCONS_00007125-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007125-exon-sc0000073-1491911889:544201..544775TCONS_00007125-exon-sc0000073-1491911889:544201..544775Clytia hemisphaericaexon
TCONS_00007125-exon-sc0000073-1510915933:544201..544775TCONS_00007125-exon-sc0000073-1510915933:544201..544775Clytia hemisphaericaexon
TCONS_00007125-exon-sc0000073-1575043694:544201..544775TCONS_00007125-exon-sc0000073-1575043694:544201..544775Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:544201..544775 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0969337	0.0945257	0	0	0	0	0	0	0.0816842	0	0	0	0.386805	0.0669502	0	0	0	0.0745846	1.54564	0.539134	0.281163	0.137141	0	0	0	0.185766	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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