TCONS_00007123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007123
Unique NameTCONS_00007123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007123 ID=TCONS_00007123|Name=TCONS_00007123|organism=Clytia hemisphaerica|type=transcript|length=538bp
ACAGAGCGGTCGTAATTGGCACACTCTTGTACACGATTATCTCATTAACG
AACTATCCTTCAAGCAATCAACAGCAGACCCATGCGTCTATTTTCAACAG
GGTGGAACCGCCATCCTACTCGTTTGGGTAGACGACATTATTATCCCACA
TGGCACaactgaaatcaaaattttcatcaaaatttaagatgAAAGACCTC
GGACAACTATCTACCTTCCTCGGTATAAACTTCAAACAGACAGAGGAATT
CATCACCATGTCGCAATCACATTACCTTGAAGctgttttaaaaactttta
atctaTGGGACTGTAAACCCCGATCTACACCATGTGAGCAAAACCTCAAA
GCTTACAATGATTCGAAATCCGACGAGACCGACAACCAGAAGTACCGTAA
AATGGTTGGAAGTCTAATTTACGCTATGACGTGCACAAGACCCGATATCG
CTTTTGTCGTGACGAAATTATCTCGACATCTATCTTGCCCTGAATCATCA
GATTGGGCAATGCTCAAACACGTCTTCCAATACATCAA
Run BLAST on NCBI

protein sequence of TCONS_00007123-protein

>TCONS_00007123-protein ID=TCONS_00007123-protein|Name=TCONS_00007123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MAQLKSKFSSKFKMKDLGQLSTFLGINFKQTEEFITMSQSHYLEAVLKTF
NLWDCKPRSTPCEQNLKAYNDSKSDETDNQKYRKMVGSLIYAMTCTRPDI
AFVVTKLSRHLSCPESSDWAMLKHVFQYI
Run BLAST on NCBI

transcript from alignment at sc0000073:524973..525510

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007123 ID=TCONS_00007123|Name=TCONS_00007123|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at sc0000073:524973..525510 (Clytia hemisphaerica)
TTGATGTATTGGAAGACGTGTTTGAGCATTGCCCAATCTGATGATTCAGG
GCAAGATAGATGTCGAGATAATTTCGTCACGACAAAAGCGATATCGGGTC
TTGTGCACGTCATAGCGTAAATTAGACTTCCAACCATTTTACGGTACTTC
TGGTTGTCGGTCTCGTCGGATTTCGAATCATTGTAAGCTTTGAGGTTTTG
CTCACATGGTGTAGATCGGGGTTTACAGTCCCAtagattaaaagttttta
aaacagCTTCAAGGTAATGTGATTGCGACATGGTGATGAATTCCTCTGTC
TGTTTGAAGTTTATACCGAGGAAGGTAGATAGTTGTCCGAGGTCTTTcat
cttaaattttgatgaaaattttgatttcagttGTGCCATGTGGGATAATA
ATGTCGTCTACCCAAACGAGTAGGATGGCGGTTCCACCCTGTTGAAAATA
GACGCATGGGTCTGCTGTTGATTGCTTGAAGGATAGTTCGTTAATGAGAT
AATCGTGTACAAGAGTGTGCCAATTACGACCGCTCTGT

Coding sequence (CDS) from alignment at sc0000073:524973..525510

>TCONS_00007123 ID=TCONS_00007123|Name=TCONS_00007123|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000073:524973..525510 (Clytia hemisphaerica)
GATGTATTGGAAGACGTGTTTGAGCATTGCCCAATCTGATGATTCAGGGC
AAGATAGATGTCGAGATAATTTCGTCACGACAAAAGCGATATCGGGTCTT
GTGCACGTCATAGCGTAAATTAGACTTCCAACCATTTTACGGTACTTCTG
GTTGTCGGTCTCGTCGGATTTCGAATCATTGTAAGCTTTGAGGTTTTGCT
CACATGGTGTAGATCGGGGTTTACAGTCCCAtagattaaaagtttttaaa
acagCTTCAAGGTAATGTGATTGCGACATGGTGATGAATTCCTCTGTCTG
TTTGAAGTTTATACCGAGGAAGGTAGATAGTTGTCCGAGGTCTTTcatct
taaattttgatgaaaattttgatttcagttGTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003991XLOC_003991Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007123-proteinTCONS_00007123-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007123-exon-sc0000073-1491911889:524973..525510TCONS_00007123-exon-sc0000073-1491911889:524973..525510Clytia hemisphaericaexon
TCONS_00007123-exon-sc0000073-1510915933:524973..525510TCONS_00007123-exon-sc0000073-1510915933:524973..525510Clytia hemisphaericaexon
TCONS_00007123-exon-sc0000073-1575043694:524973..525510TCONS_00007123-exon-sc0000073-1575043694:524973..525510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:524973..525510 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34423	1.57614	0.798323	0.790356	5.42061	3.76814	3.04736	2.26195	0.510623	2.13794	1.15767	0.978882	0.964732	1.24135	0.836234	2.09837	1.08652	1.331	0.995089	1.66007	1.11225	1.82919	0.468224	2.38231	1.28487	1.95453	2.01187	0.784756	1.26782	0.706268
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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