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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007113 ID=TCONS_00007113|Name=TCONS_00007113|organism=Clytia hemisphaerica|type=transcript|length=1677bp
TTGTTGACATTAAGACACGTTTTAAGAGCATGACACATGATAGTTTGTCA
ATCAATTTGTTTACATAACCTAAAAGGTATAAAAGGGGAGCAAGAAGGGA
TGCACAGATCATAAATTATCATCCAACAACTCATTCAACACATTGTACAG
TACGTGAGGAGCTATCtcactattttagtgaaacctTCGTCAAAATGAGC
ATGGAAGATTTATCGATGAAAGaccgtttgaaatatttgaaacgTCGATT
CAGCCGTAAAGGAAGCTATGAAGTCGATTtcaattcaccaaaattcaaag
tCAAATCACTGTGTAGTGAGGGAATCCATGTTGACTCCCTTGAAAGAGAG
GCATCAAACGAGGCTGTAGATCAGGCCCTTGGCACCATTGGGTCGCTTGA
GGACCGTAACAAGAACGACGTGGTCCTTAAAGTTTCATTACGTAACGGGA
TCGAAGTCATTTCACGTAAAACACGTAAGGAGCTTTTCTCATACCGTATC
CATCAAGTCGGGTATTGTAACGTAGACAAACGTTACCCGCAGGTTTTCGT
TTTCACGGCAGCAAAAGTCAAAGATGAACTCAAATGTTACGTATTTTTAT
GTGATGACGCTGCTAAAGCGAAAGCTATCTGTCTTACATTGGCTAAAGTT
TTCCAGAGCAGTTTCAGTAATtggcaaaaatcaaaagatatgGCAGATGA
CCTTGATCAACATAATTTGAACAATATGGATGATTCAAGACGTAAATCCG
AAAGTGCTTTACGTGTCAGCAATATGAGACGTATGGAAGAAAGACGTGCT
TCTGACTTTGTGACGACGTCAAGTACTGGCCTCCTAGCGCCGAAACGACT
TGATGTAAGACGTAGCAGCGCCGATGCGAGATACGATCACGAATCAACCA
GTGATGAAGATTCTAATGTGGGTGATATGGATGAGATGTATTCTGATTAT
ATGTCGAAAAGCGTTGAGAAAGGGACATGCTCTCTGCTCAGACGTGGAAG
TACTGATTGGGACGCTATTGAAAAAGACTCTGAGATTCAACGAAAAATGC
AAGGAGATATGATAGTATGGGAAGACTAAGTTGTCTTAAGAGGACCGTTA
GGGTAATCCTCCTTTTGTTGAAGATTCcaatttttgtaggttttataTTT
AAGTTAAGTAAAActattttttaggttttaggatttttacggtatttttg
ttttttgttttgttttgtacataaaaaagaaaatagaaaaaagctgaatt
taatgtaaaatatttagtagaatattttgcaaattttgtaaataataaat
taaagagtttaatgtatttttataaagtaaTTAGTAAATCATAAAATTTC
TATAATGCAGTGaataattttcgtttttttgccTGGCAACAGATAGAATG
AAAAGAATTTCTACTCAGTGACATGATTTTTCGTGTTTCTGATACAACTT
GTTACCATTATGAACTTTGAacgaaaaatctattttttctcGTACGCATT
ATTTGTATATCGTTGTTATTTATCTATCTAGCTATCTGTTTGTTTTTGCT
TTCTCAATACCAAAAATCCATCCTTTTCTTAAATCCCAATGTCAAATATT
TTGTGTAATTTTTTGAATCGTGGAATTTTTATTCGTCTCTTCTGTTGACA
TTCTACAAAGTATCTTGACGAGAACAA Run BLAST on NCBI protein sequence of TCONS_00007113-protein >TCONS_00007113-protein ID=TCONS_00007113-protein|Name=TCONS_00007113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MSMEDLSMKDRLKYLKRRFSRKGSYEVDFNSPKFKVKSLCSEGIHVDSLE
REASNEAVDQALGTIGSLEDRNKNDVVLKVSLRNGIEVISRKTRKELFSY
RIHQVGYCNVDKRYPQVFVFTAAKVKDELKCYVFLCDDAAKAKAICLTLA
KVFQSSFSNWQKSKDMADDLDQHNLNNMDDSRRKSESALRVSNMRRMEER
RASDFVTTSSTGLLAPKRLDVRRSSADARYDHESTSDEDSNVGDMDEMYS
DYMSKSVEKGTCSLLRRGSTDWDAIEKDSEIQRKMQGDMIVWED Run BLAST on NCBI transcript from alignment at sc0000073:414660..416336 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007113 ID=TCONS_00007113|Name=TCONS_00007113|organism=Clytia hemisphaerica|type=transcript|length=1677bp|location=Sequence derived from alignment at sc0000073:414660..416336 (Clytia hemisphaerica)
TTGTTCTCGTCAAGATACTTTGTAGAATGTCAACAGAAGAGACGAATAAA
AATTCCACGATTCAAAAAATTACACAAAATATTTGACATTGGGATTTAAG
AAAAGGATGGATTTTTGGTATTGAGAAAGCAAAAACAAACAGATAGCTAG
ATAGATAAATAACAACGATATACAAATAATGCGTACgagaaaaaatagat
ttttcgtTCAAAGTTCATAATGGTAACAAGTTGTATCAGAAACACGAAAA
ATCATGTCACTGAGTAGAAATTCTTTTCATTCTATCTGTTGCCAggcaaa
aaaacgaaaattattCACTGCATTATAGAAATTTTATGATTTACTAAtta
ctttataaaaatacattaaactctttaatttattatttacaaaatttgca
aaatattctactaaatattttacattaaattcagcttttttctattttct
tttttatgtacaaaacaaaacaaaaaacaaaaataccgtaaaaatcctaa
aacctaaaaaatagTTTTACTTAACTTAAAtataaaacctacaaaaattg
GAATCTTCAACAAAAGGAGGATTACCCTAACGGTCCTCTTAAGACAACTT
AGTCTTCCCATACTATCATATCTCCTTGCATTTTTCGTTGAATCTCAGAG
TCTTTTTCAATAGCGTCCCAATCAGTACTTCCACGTCTGAGCAGAGAGCA
TGTCCCTTTCTCAACGCTTTTCGACATATAATCAGAATACATCTCATCCA
TATCACCCACATTAGAATCTTCATCACTGGTTGATTCGTGATCGTATCTC
GCATCGGCGCTGCTACGTCTTACATCAAGTCGTTTCGGCGCTAGGAGGCC
AGTACTTGACGTCGTCACAAAGTCAGAAGCACGTCTTTCTTCCATACGTC
TCATATTGCTGACACGTAAAGCACTTTCGGATTTACGTCTTGAATCATCC
ATATTGTTCAAATTATGTTGATCAAGGTCATCTGCcatatcttttgattt
ttgccaATTACTGAAACTGCTCTGGAAAACTTTAGCCAATGTAAGACAGA
TAGCTTTCGCTTTAGCAGCGTCATCACATAAAAATACGTAACATTTGAGT
TCATCTTTGACTTTTGCTGCCGTGAAAACGAAAACCTGCGGGTAACGTTT
GTCTACGTTACAATACCCGACTTGATGGATACGGTATGAGAAAAGCTCCT
TACGTGTTTTACGTGAAATGACTTCGATCCCGTTACGTAATGAAACTTTA
AGGACCACGTCGTTCTTGTTACGGTCCTCAAGCGACCCAATGGTGCCAAG
GGCCTGATCTACAGCCTCGTTTGATGCCTCTCTTTCAAGGGAGTCAACAT
GGATTCCCTCACTACACAGTGATTTGactttgaattttggtgaattgaAA
TCGACTTCATAGCTTCCTTTACGGCTGAATCGAcgtttcaaatatttcaa
acggtCTTTCATCGATAAATCTTCCATGCTCATTTTGACGAaggtttcac
taaaatagtgaGATAGCTCCTCACGTACTGTACAATGTGTTGAATGAGTT
GTTGGATGATAATTTATGATCTGTGCATCCCTTCTTGCTCCCCTTTTATA
CCTTTTAGGTTATGTAAACAAATTGATTGACAAACTATCATGTGTCATGC
TCTTAAAACGTGTCTTAATGTCAACAA Coding sequence (CDS) from alignment at sc0000073:414660..416336 >TCONS_00007113 ID=TCONS_00007113|Name=TCONS_00007113|organism=Clytia hemisphaerica|type=CDS|length=885bp|location=Sequence derived from alignment at sc0000073:414660..416336 (Clytia hemisphaerica)
TTAGTCTTCCCATACTATCATATCTCCTTGCATTTTTCGTTGAATCTCAG
AGTCTTTTTCAATAGCGTCCCAATCAGTACTTCCACGTCTGAGCAGAGAG
CATGTCCCTTTCTCAACGCTTTTCGACATATAATCAGAATACATCTCATC
CATATCACCCACATTAGAATCTTCATCACTGGTTGATTCGTGATCGTATC
TCGCATCGGCGCTGCTACGTCTTACATCAAGTCGTTTCGGCGCTAGGAGG
CCAGTACTTGACGTCGTCACAAAGTCAGAAGCACGTCTTTCTTCCATACG
TCTCATATTGCTGACACGTAAAGCACTTTCGGATTTACGTCTTGAATCAT
CCATATTGTTCAAATTATGTTGATCAAGGTCATCTGCcatatcttttgat
ttttgccaATTACTGAAACTGCTCTGGAAAACTTTAGCCAATGTAAGACA
GATAGCTTTCGCTTTAGCAGCGTCATCACATAAAAATACGTAACATTTGA
GTTCATCTTTGACTTTTGCTGCCGTGAAAACGAAAACCTGCGGGTAACGT
TTGTCTACGTTACAATACCCGACTTGATGGATACGGTATGAGAAAAGCTC
CTTACGTGTTTTACGTGAAATGACTTCGATCCCGTTACGTAATGAAACTT
TAAGGACCACGTCGTTCTTGTTACGGTCCTCAAGCGACCCAATGGTGCCA
AGGGCCTGATCTACAGCCTCGTTTGATGCCTCTCTTTCAAGGGAGTCAAC
ATGGATTCCCTCACTACACAGTGATTTGactttgaattttggtgaattga
AATCGACTTCATAGCTTCCTTTACGGCTGAATCGAcgtttcaaatatttc
aaacggtCTTTCATCGATAAATCTTCCATGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007113-exon-sc0000073-1491911889:414660..416336 | TCONS_00007113-exon-sc0000073-1491911889:414660..416336 | Clytia hemisphaerica | exon |
| TCONS_00007113-exon-sc0000073-1510915933:414660..416336 | TCONS_00007113-exon-sc0000073-1510915933:414660..416336 | Clytia hemisphaerica | exon |
| TCONS_00007113-exon-sc0000073-1575043694:414660..416336 | TCONS_00007113-exon-sc0000073-1575043694:414660..416336 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:414660..416336 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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