TCONS_00007111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007111
Unique NameTCONS_00007111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007111 ID=TCONS_00007111|Name=TCONS_00007111|organism=Clytia hemisphaerica|type=transcript|length=463bp
gcctgACCTAAATTCATGACAAGAAAAAGCTTTaatatttctgatttttc
ttaaCGAGTTGAACTCCCATATATGTACCAAAATATACCCGACGTTAGAA
ACTTTATGGTTATCTAGCGTTCATATAACTTTAAAAATTGACGTTGCGCT
CCGGCTTGGTGGCTGCTTGGCTGGCATCTCAGGTTTAGTATAATTTccca
aatcaaaatttcttgtGTAATAGTGTACAATTATGATATAACTGCACTTG
AGATGTTATCAATCATTTCTAAGGTCCATTTTGGCCCTTTTACCTAGAGC
TTCAACAGTTTTCCAATCACAAAATCttagaaatatatattttttcttat
cAACAACCCTATATCACACCAAAAATGATACGCGGAAAAAATTGTATCGt
tatattttgttatttgtcattttttgttttatagaAATATAAATGTAGCG
CAAGAAAGAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000073:376857..377319

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007111 ID=TCONS_00007111|Name=TCONS_00007111|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at sc0000073:376857..377319 (Clytia hemisphaerica)
CTTTTCTTTCTTGCGCTACATTTATATTtctataaaacaaaaaatgacaa
ataacaaaatataaCGATACAATTTTTTCCGCGTATCATTTTTGGTGTGA
TATAGGGTTGTTgataagaaaaaatatatatttctaaGATTTTGTGATTG
GAAAACTGTTGAAGCTCTAGGTAAAAGGGCCAAAATGGACCTTAGAAATG
ATTGATAACATCTCAAGTGCAGTTATATCATAATTGTACACTATTACaca
agaaattttgatttgggAAATTATACTAAACCTGAGATGCCAGCCAAGCA
GCCACCAAGCCGGAGCGCAACGTCAATTTTTAAAGTTATATGAACGCTAG
ATAACCATAAAGTTTCTAACGTCGGGTATATTTTGGTACATATATGGGAG
TTCAACTCGttaagaaaaatcagaaatattAAAGCTTTTTCTTGTCATGA
ATTTAGGTcaggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003979XLOC_003979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007111-exon-sc0000073-1491911889:376857..377319TCONS_00007111-exon-sc0000073-1491911889:376857..377319Clytia hemisphaericaexon
TCONS_00007111-exon-sc0000073-1510915933:376857..377319TCONS_00007111-exon-sc0000073-1510915933:376857..377319Clytia hemisphaericaexon
TCONS_00007111-exon-sc0000073-1575043694:376857..377319TCONS_00007111-exon-sc0000073-1575043694:376857..377319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:376857..377319 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279352	0.136206	0	0	0	0.148845	0	0.168117	0.117702	0.43738	0	0.279071	0.185788	0	0.0793127	0.0851147	0	0.107472	0	0	0.270094	0.395227	0	0.1456	0	0.133839	0	0	0.310059	0.157951
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top