TCONS_00007109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007109
Unique NameTCONS_00007109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007109 ID=TCONS_00007109|Name=TCONS_00007109|organism=Clytia hemisphaerica|type=transcript|length=446bp
GTCCATGCTGGAGCAGATGCTAAAGTGGCCGGCGTTTCGGCTGGAATGAG
CCACACACCTTTTCAAGCTGAAGCATCCGTCCTTGGAGCTGGGGCGGAAA
TTGGAGTCGGTTTGGAGTACACTGGCGCTTCAGCAGGCGCTCATTTGGCG
GAAGCGAGAGCGGGGCCGTTTGGTGTACGCGCTGGTGTTAAGTTTGGAGC
TGGAGTGCGAAATGGTGTCCCTGAAGTTGACTTGGGTCCCGTAACTGTCC
CATGCTGTGTTATGTGAAATGGTTTGAAATAAATGAGCTTTCCATAGTTC
TGAATTGTGGCGCACTGCAAATTAACCCATTGCCTTGTTTATTCATATTT
TTCTAACTTTGTTTTTTTCGGTTGCCAAAGATTTGTATTATTGAAATTAT
AAATTGATTATTCAGATAATAAAACTAAATCATGATCATGACTGAG
Run BLAST on NCBI

transcript from alignment at sc0000073:292468..292913

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007109 ID=TCONS_00007109|Name=TCONS_00007109|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at sc0000073:292468..292913 (Clytia hemisphaerica)
CTCAGTCATGATCATGATTTAGTTTTATTATCTGAATAATCAATTTATAA
TTTCAATAATACAAATCTTTGGCAACCGAAAAAAACAAAGTTAGAAAAAT
ATGAATAAACAAGGCAATGGGTTAATTTGCAGTGCGCCACAATTCAGAAC
TATGGAAAGCTCATTTATTTCAAACCATTTCACATAACACAGCATGGGAC
AGTTACGGGACCCAAGTCAACTTCAGGGACACCATTTCGCACTCCAGCTC
CAAACTTAACACCAGCGCGTACACCAAACGGCCCCGCTCTCGCTTCCGCC
AAATGAGCGCCTGCTGAAGCGCCAGTGTACTCCAAACCGACTCCAATTTC
CGCCCCAGCTCCAAGGACGGATGCTTCAGCTTGAAAAGGTGTGTGGCTCA
TTCCAGCCGAAACGCCGGCCACTTTAGCATCTGCTCCAGCATGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003977XLOC_003977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007109-exon-sc0000073-1491911889:292468..292913TCONS_00007109-exon-sc0000073-1491911889:292468..292913Clytia hemisphaericaexon
TCONS_00007109-exon-sc0000073-1510915933:292468..292913TCONS_00007109-exon-sc0000073-1510915933:292468..292913Clytia hemisphaericaexon
TCONS_00007109-exon-sc0000073-1575043694:292468..292913TCONS_00007109-exon-sc0000073-1575043694:292468..292913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:292468..292913 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29939	0	0.67797	0.272738	0	0.319044	2.02053	1.97375	6.72575	10.2254	2.37915	3.05688	4.91952	4.64484	49.6156	33.4321	13.127	18.0109	39.0509	31.4592	4.85479	0.901842	4.97026	5.23975	1.12505	0.860638	3.62266	6.74812	20.7416	18.7608
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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