TCONS_00007107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007107
Unique NameTCONS_00007107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007107 ID=TCONS_00007107|Name=TCONS_00007107|organism=Clytia hemisphaerica|type=transcript|length=274bp
ATAGGTGAACATCTACATTTTCGTGTTGGGCTAAAACACGAGATGTATTT
GCTGCGTTGCCACCTACTGCCCATGTTTGAGATAAAACTCTCGAGTCTTG
ATCTTCTATTGGAAATTCTTTACATTCGTTGACAATATCAATACATGTCA
GTCCAACAATAAGTGCTTTTTCAGGCTTTTTGCAAGATTTAAAGGAGCTG
TTgactttgtttacaaaataatCCGCCATTTTAGACCGTGTGTTTTGTTA
AGTCGGCTACCGTAGTTTTATATT
Run BLAST on NCBI

transcript from alignment at sc0000073:224747..225020

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007107 ID=TCONS_00007107|Name=TCONS_00007107|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at sc0000073:224747..225020 (Clytia hemisphaerica)
AATATAAAACTACGGTAGCCGACTTAACAAAACACACGGTCTAAAATGGC
GGattattttgtaaacaaagtcAACAGCTCCTTTAAATCTTGCAAAAAGC
CTGAAAAAGCACTTATTGTTGGACTGACATGTATTGATATTGTCAACGAA
TGTAAAGAATTTCCAATAGAAGATCAAGACTCGAGAGTTTTATCTCAAAC
ATGGGCAGTAGGTGGCAACGCAGCAAATACATCTCGTGTTTTAGCCCAAC
ACGAAAATGTAGATGTTCACCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003975XLOC_003975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007107-exon-sc0000073-1491911889:224747..225020TCONS_00007107-exon-sc0000073-1491911889:224747..225020Clytia hemisphaericaexon
TCONS_00007107-exon-sc0000073-1510915933:224747..225020TCONS_00007107-exon-sc0000073-1510915933:224747..225020Clytia hemisphaericaexon
TCONS_00007107-exon-sc0000073-1575043694:224747..225020TCONS_00007107-exon-sc0000073-1575043694:224747..225020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:224747..225020 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1435	1.04512	1.82023	1.18721	0	0.571053	4.82266	1.93496	4.06414	1.11869	0.542913	2.49823	3.56393	2.59083	6.99861	2.61237	4.82735	6.59717	0.569647	0	2.07246	1.51631	13.5173	8.9376	12.6576	9.24267	0.73479	1.56838	5.94779	10.9077
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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