TCONS_00007100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007100
Unique NameTCONS_00007100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007100 ID=TCONS_00007100|Name=TCONS_00007100|organism=Clytia hemisphaerica|type=transcript|length=884bp
tgtttaaaactttataaagaataaagaatgctattttttagcttaaaata
aattattaaaatatgTCAAGTCATAGAATCAAGATACTAATAAAAtgttt
tacagaaaaaaactaGCACTAGTCTTGGTAGCAAAGTGTGAAGAAATGCA
GGTTATCAGAATATATACTGTTTTGACTATTTTGGCAAATATATCAAAAG
CCTTGTGtgtttcttttgaccaatgccAGCAACACGATCATTTATTTACC
AAATCCAGAGTCGGGATTGAAATCTTAAACATGACTGATATCGAACTTGA
TAAAGTGGAATCAAGCAACACAGGTCCGAATTGTTTCTCAAAATGCCACA
AGATCTCTGAATGCAAAACAGCTGTTTTCTTCAACCAGTCAAAAGAATGT
CGTTTGAAAAGTATCAGTCGATTAAATGTTACAAGCAGAATCAAACTATC
ACCGGAAGCTCAATACTTTGAGAAAAGAGTATGCGAGACTGATTTTGAAT
CGAAAATCAAATTCGTCTCTCTGGTCAACAATTCAATCGACTGCAAAGAC
ATCTACAATCAAGGTTGGACAATAGATGGAGTCTACGGGATTGAAGACCC
TGAGGAACAATCCACATACCAATCGATCCATTGCAGAATGTCCCTTCTTG
GTGGTGGATGGACAGTTATTCAAAGACGTGTGGATGGCGTGACCGACTTT
GGACAACCATGGAGAACATACAAATCCGGCTTCGGTGATTTATCCAAAGA
TTTTTGGTATGGAAACAAACAAATACACAAACTAGCAAAAAAGGGAATGC
GAAGTGAAATCCTTTTTGAATTGAAAGCCGCCGATGGAATCACATATTAT
CCATACTATAACGATTTCGAGGTCGAAGGTGAGG
Run BLAST on NCBI

protein sequence of TCONS_00007100-protein

>TCONS_00007100-protein ID=TCONS_00007100-protein|Name=TCONS_00007100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MFYRKKLALVLVAKCEEMQVIRIYTVLTILANISKALCVSFDQCQQHDHL
FTKSRVGIEILNMTDIELDKVESSNTGPNCFSKCHKISECKTAVFFNQSK
ECRLKSISRLNVTSRIKLSPEAQYFEKRVCETDFESKIKFVSLVNNSIDC
KDIYNQGWTIDGVYGIEDPEEQSTYQSIHCRMSLLGGGWTVIQRRVDGVT
DFGQPWRTYKSGFGDLSKDFWYGNKQIHKLAKKGMRSEILFELKAADGIT
YYPYYNDFEVEGE
Run BLAST on NCBI

transcript from alignment at sc0000073:29520..30403

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007100 ID=TCONS_00007100|Name=TCONS_00007100|organism=Clytia hemisphaerica|type=transcript|length=884bp|location=Sequence derived from alignment at sc0000073:29520..30403 (Clytia hemisphaerica)
CCTCACCTTCGACCTCGAAATCGTTATAGTATGGATAATATGTGATTCCA
TCGGCGGCTTTCAATTCAAAAAGGATTTCACTTCGCATTCCCTTTTTTGC
TAGTTTGTGTATTTGTTTGTTTCCATACCAAAAATCTTTGGATAAATCAC
CGAAGCCGGATTTGTATGTTCTCCATGGTTGTCCAAAGTCGGTCACGCCA
TCCACACGTCTTTGAATAACTGTCCATCCACCACCAAGAAGGGACATTCT
GCAATGGATCGATTGGTATGTGGATTGTTCCTCAGGGTCTTCAATCCCGT
AGACTCCATCTATTGTCCAACCTTGATTGTAGATGTCTTTGCAGTCGATT
GAATTGTTGACCAGAGAGACGAATTTGATTTTCGATTCAAAATCAGTCTC
GCATACTCTTTTCTCAAAGTATTGAGCTTCCGGTGATAGTTTGATTCTGC
TTGTAACATTTAATCGACTGATACTTTTCAAACGACATTCTTTTGACTGG
TTGAAGAAAACAGCTGTTTTGCATTCAGAGATCTTGTGGCATTTTGAGAA
ACAATTCGGACCTGTGTTGCTTGATTCCACTTTATCAAGTTCGATATCAG
TCATGTTTAAGATTTCAATCCCGACTCTGGATTTGGTAAATAAATGATCG
TGTTGCTggcattggtcaaaagaaacaCACAAGGCTTTTGATATATTTGC
CAAAATAGTCAAAACAGTATATATTCTGATAACCTGCATTTCTTCACACT
TTGCTACCAAGACTAGTGCtagtttttttctgtaaaacaTTTTATTAGTA
TCTTGATTCTATGACTTGAcatattttaataatttattttaagctaaaaa
atagcattctttattctttataaagttttaaaca

Coding sequence (CDS) from alignment at sc0000073:29520..30403

>TCONS_00007100 ID=TCONS_00007100|Name=TCONS_00007100|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at sc0000073:29520..30403 (Clytia hemisphaerica)
CTCACCTTCGACCTCGAAATCGTTATAGTATGGATAATATGTGATTCCAT
CGGCGGCTTTCAATTCAAAAAGGATTTCACTTCGCATTCCCTTTTTTGCT
AGTTTGTGTATTTGTTTGTTTCCATACCAAAAATCTTTGGATAAATCACC
GAAGCCGGATTTGTATGTTCTCCATGGTTGTCCAAAGTCGGTCACGCCAT
CCACACGTCTTTGAATAACTGTCCATCCACCACCAAGAAGGGACATTCTG
CAATGGATCGATTGGTATGTGGATTGTTCCTCAGGGTCTTCAATCCCGTA
GACTCCATCTATTGTCCAACCTTGATTGTAGATGTCTTTGCAGTCGATTG
AATTGTTGACCAGAGAGACGAATTTGATTTTCGATTCAAAATCAGTCTCG
CATACTCTTTTCTCAAAGTATTGAGCTTCCGGTGATAGTTTGATTCTGCT
TGTAACATTTAATCGACTGATACTTTTCAAACGACATTCTTTTGACTGGT
TGAAGAAAACAGCTGTTTTGCATTCAGAGATCTTGTGGCATTTTGAGAAA
CAATTCGGACCTGTGTTGCTTGATTCCACTTTATCAAGTTCGATATCAGT
CATGTTTAAGATTTCAATCCCGACTCTGGATTTGGTAAATAAATGATCGT
GTTGCTggcattggtcaaaagaaacaCACAAGGCTTTTGATATATTTGCC
AAAATAGTCAAAACAGTATATATTCTGATAACCTGCATTTCTTCACACTT
TGCTACCAAGACTAGTGCtagtttttttctgtaaaacaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003968XLOC_003968Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007100-proteinTCONS_00007100-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007100-exon-sc0000073-1491911889:29520..30403TCONS_00007100-exon-sc0000073-1491911889:29520..30403Clytia hemisphaericaexon
TCONS_00007100-exon-sc0000073-1510915933:29520..30403TCONS_00007100-exon-sc0000073-1510915933:29520..30403Clytia hemisphaericaexon
TCONS_00007100-exon-sc0000073-1575043694:29520..30403TCONS_00007100-exon-sc0000073-1575043694:29520..30403Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:29520..30403 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.210238	0.102508	1.24972	1.10622	0	0	0	0	0	0.0548615	0	0.0350044	0	0	0.0596902	0	0.276194	0.242649	0	0	0.711447	0.966695	0.602638	1.15056	2.59582	1.15836	0.504488	0.538403	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR003609Pan_app
Blast
[Close]
BLAST of TCONS_00007100 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.300e-20
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 2 
Query:  539 DCKDIYNQGWTIDGVYGIEDPEEQSTYQSIHCRMSLLGGGWTVIQRRVDGVTDFGQPWRTYKSGFGDLSKDFWYGNKQIHKLAKKGMRSEIL-FELKAADGITYYPYYNDFEVEGE 883
            DC D Y  G      Y +    + S+++ ++C M  +GGGWTV+Q R+DG T+F + W+ YK+GFG+L ++FW GN +IH L K   +  IL  +L+  +G+  Y  Y+ F V  E
Sbjct:  212 DCSDYYAIGKRSSETYRVTPDPKNSSFE-VYCDMETMGGGWTVLQARLDGSTNFTRTWQDYKAGFGNLRREFWLGNDKIHLLTKS--KEMILRIDLEDFNGVELYALYDQFYVANE 324
The following BLAST results are available for this feature:
BLAST of TCONS_00007100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGL27.300e-2038.79Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1[more]
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