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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007099 ID=TCONS_00007099|Name=TCONS_00007099|organism=Clytia hemisphaerica|type=transcript|length=2408bp GCAAACTAAATATATGTAAGGAAGCAGAACTAAGGTTATATTATGATTGA AAGTTACATGTATGTTAATAGGATAATATGTATTATATGTTACATGGATA ATATGTttgtataatatatattatGGCTAGGTCTACCATCTTGCCCTGAC GGTAGAGATCATTGTTTGAACATGAGGCTAGTCTAGATCTCTACTTGCCC CCAGTGCACTTCTCCTTTGAGTTCCTTGCTGGGAGATTGGGCCGAGTGAG CTCTCCTCCTTGTGCCATGTGAGAGTCAATTCTCTCCAGCAAGGACAGTT GAAGCCTGACCATCGACAAGACAACAATGAATCTTCATATTCATTTAACT AAAATATTGGCATAATCCAGATCAGCTAAGATAAAGTTTGGGATTATTTG GACAGTATGtcttcattgtcaaatatattcAGTCTTTTTATAACATCATG TCTTCACCTATCATTAGATCTTATCCAGCCCACACTAGCGTTTTCCGCTT TCTCACATTGGTAGCAGAGGGTGGTTGGTTTTGGTGATCATGGCAGGCTT CCTCTCATCGGCTTCACAACATCAAGCCCCATCATTGGTCAACATTGGTG GAAACTTATCTTGGCAACAGAATCAACACGACAATGAAGAGCTGGATTTG CACTGAGCACTGTGCTGAGTGGTGTGAAGAGCTAGACGTCTGTGAAATCA GCTGCGGATTTGGATTACCCTGCAAGTGTCAAGAAATTGATACATCACTT GAAAGAACACAATGTGCCCATTGCTCTTGCATCTGGCTCTTTACACAAAG ATTATCTCCTGAAAACCGCACAACATGATGAGTTATTCCAACTTTTTCCA ATCAAAGTTTTTGGGGATGATCCAGATTTAAAGCGAGGAAAGCCATTCCC TGATCAGTTTATATTGACATCAAGCAAATTTGCAGATAGCCCAATGCCTG ATAATGTATTAGTTTTTGAGGATTCACCAAATGGTGTTCTTGCGGCAAAA GCTGCCGGTATGGGTGTGGTTATGGTTCCTGACCGAAGActtgatgaaaa attatatAATAATTCGACACAAGTTATCTTCTCACTGGAAGATTTTAAAC CTGAATTATTTGGTTTTCCTTGCTATGACTAAAGTCTGTAGTGACCTTGT CAAGGACcctgaagtaaaaaaaatctACAACCACTTACAGTTTTGAATTC CATATTTTTAATTCAGCATTAAGTATCATCGTCTGTAGATTTCATTTGAA CTTTTGATTATTGTGCGTGAAGATTACAATTCAGGGTCGGACAAGCAGGG AGCAATTTGCTTCAGACAATGTCCAATGTTCAATTATTATCTGTGTCCAA AACAATACTGAGACCATTCTATTTagcatttaaaaatctttttgaaggtA ATCGAAATGTGCTTTTTGTCTTCTACATTACAATACATAAAATCtccata aaaaaattctttctatAACGTACACAGAAAGAaatacataaaataaaaaa tggaaaatcaaaaaagtgaTAAAGATGATAAAGATGTTCTTCCAAGAAAA TTTACACATGTCATCTTTGATATGGATGGTCTCATCTTAGatACTGAACG TATTTACACTGAGATATACGACAGAGTTGCAGAAGCCCATGGTGGCAAAT ATTGTTGGGAAATTAAAGTGCAGTTAATGGGTCGGCCGGGTAAAGAAGGT AATCGGTTGGCTGTCGAGTTGATGAATCTGCCCATCACGCCTGAACAGTT TTATCAGGAACAACAAGTCCATAAAGAGGAGCTTTTTCCCCAGGCCAACG TTCTTCCAGGCGCAGACAAACTGATACGTCATCTTCACAAACACAATATA CCAATTGCTGTGGCTTCTGGTTCATTCCATAAAGACTACTTAGTCAAAAC AACAAAGCATAGAGAATTGTTTGAACTTTTTCCAATCAAAGTTTTTGGGG ATGATCCAGACTTAAAACGAGGAAAACCATTCCCTGATCAATTTATATTG ACATCAAGCAAATTTGCAGATAGCCCAATACCTGAGAATGTATTAGTTTT TGAGGATTCTTCAAATGGTGTTCTTGCGGCAAAAGCTGCCGGTATGGGTG TGGTTATGGTTCCTGACCGAAGActtgatgaaaaattatatAATAATCCG ACACAAGTTATTTTCTCACTGGAAGATTTTAAACCTGAATTATTTGGTTT TCCACCTTATGAATAGTGTTGTCTTGTCtttagtattgtgtaattttata caaggaaaaattttgataatttgttGGTGTTTTAATTATTATGAATATCT AGTTTTAAttcacattttattttttttagactttatacaatcatgaaatt ttttgagGATCTCATTgatatttattaatttttgcaaaatataagaaata tctgtaaa Run BLAST on NCBI protein sequence of TCONS_00007099-protein >TCONS_00007099-protein ID=TCONS_00007099-protein|Name=TCONS_00007099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MENQKSDKDDKDVLPRKFTHVIFDMDGLILDTERIYTEIYDRVAEAHGGK YCWEIKVQLMGRPGKEGNRLAVELMNLPITPEQFYQEQQVHKEELFPQAN VLPGADKLIRHLHKHNIPIAVASGSFHKDYLVKTTKHRELFELFPIKVFG DDPDLKRGKPFPDQFILTSSKFADSPIPENVLVFEDSSNGVLAAKAAGMG VVMVPDRRLDEKLYNNPTQVIFSLEDFKPELFGFPPYE Run BLAST on NCBI transcript from alignment at sc0000073:733456..736427- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007099 ID=TCONS_00007099|Name=TCONS_00007099|organism=Clytia hemisphaerica|type=transcript|length=2972bp|location=Sequence derived from alignment at sc0000073:733456..736427- (Clytia hemisphaerica) GCAAACTAAATATATGTAAGGAAGCAGAACTAAGGTTATATTATGATTGA
AAGTTACATGTATGTTAATAGGATAATATGTATTATATGTTACATGGATA
ATATGTTTGTATAATATATATTATGGCTAGGTCTACCATCTTGCCCTGAC
GGTAGAGATCATTGTTTGAACATGAGGCTAGTCTAGATCTCTACTTGCCC
CCAGTGCACTTCTCCTTTGAGTTCCTTGCTGGGAGATTGGGCCGAGTGAG
CTCTCCTCCTTGTGCCATGTGAGAGTCAATTCTCTCCAGCAAGGACAGTT
GAAGCCTGACCATCGACAAGACAACAATGAATCTTCATATTCATTTAACT
AAAATATTGGCATAATCCAGATCAGCTAAGATAAAGTTTGGGATTATTTG
GACAGTATGTCTTCATTGTCAAATATATTCAGTCTTTTTATAACATCATG
TCTTCACCTATCATTAGATCTTATCCAGCCCACACTAGCGTTTTCCGCTT
TCTCACATTGGTAGCAGAGGGTGGTTGGTTTTGGTGATCATGGCAGGCTT
CCTCTCATCGGCTTCACAACATCAAGCCCCATCATTGGTCAACATTGGTG
GAAACTTATCTTGGCAACAGAATCAACACGACAATGAAGAGCTGGATTTG
CACTGAGCACTGTGCTGAGTGGTGTGAAGAGCTAGACGTCTGTGAAATCA
GCTGCGGATTTGGATTACCCTGCAAGTAAGGAAATAAATGTTGGCATTTT
TCAAATTTTTTCATCTTTAGTCGAAAAAGTAACCAAAATTTATTTAAATT
TCTCTATTTTTGTTTTAGGTGTCAAGAAATTGATACATCACTTGAAAGAA
CACAATGTGCCCATTGCTCTTGCATCTGGCTCTTTACACAAAGATTATCT
CCTGAAAACCGCACAACATGATGAGTTATTCCAACTTTTTCCAATCAAAG
TTTTTGGGGATGATCCAGATTTAAAGCGAGGAAAGCCATTCCCTGATCAG
TTTATATTGACATCAAGCAAATTTGCAGATAGCCCAATGCCTGATAATGT
ATTAGTTTTTGAGGATTCACCAAATGGTGTTCTTGCGGCAAAAGCTGCCG
GTATGGGTGTGGTTATGGTTCCTGACCGAAGACTTGATGAAAAATTATAT
AATAATTCGACACAAGTTATCTTCTCACTGGAAGATTTTAAACCTGAATT
ATTTGGTTTTCCTTGCTATGACTAAAGTCTGTAGTGACCTTGTCAAGGAC
CCTGAAGTAAAAAAAATCTACAACCACTTACAGTTTTGAATTCCATATTT
TTAATTCAGCATTAAGTATCATCGTCTGTAGATTTCATTTGAACTTTTGA
TTATTGTGCGTGAAGATTACAATTCAGGGTCGGACAAGCAGGGAGCAATT
TGCTTCAGACAATGTCCAATGTTCAATTATTATCTGTGTCCAAAACAATA
CTGAGACCATTCTATTTAGCATTTAAAAATCTTTTTGAAGGTAATCGAAA
TGTGCTTTTTGTCTTCTACATTACAATACATAAAATCTCCATAAAAAAAT
TCTTTCTATAACGTACACAGAAAGAAATACATAAAATAAAAAATGGAAAA
TCAAAAAAGTGATAAAGATGATAAAGATGTTCTTCCAAGAAAATTTACAC
ATGTCATCTTTGATATGGATGGTCTCATCTTAGGCAAGTATTTCCATCTG
TTAACTGCTATACAATGCTATCTGTTTGTCACAAGAGAGTCACCAATCTT
AATTTTGAAAACATTGAATTGATTGATAAGGATGAGTTTAAGGTTTGGTT
TCCAATTTAATAACAGTTTGATAATAACATATTTACTTGACAATACTGTA
TAAAATTTCATCATATTTCAATCCATCATCAGATTATGAACCAACCTCTA
CAAACTTTCTCATCCCGCAAAATAAGCTTTGAAATATTTTGTTTTAGATA
CTGAACGTATTTACACTGAGATATACGACAGAGTTGCAGAAGCCCATGGT
GGCAAATATTGTTGGGAAATTAAAGTGCAGTTAATGGGTCGGCCGGGTAA
AGAAGGTAATCGGTTGGCTGTCGAGTTGATGAATCTGCCCATCACGCCTG
AACAGTTTTATCAGGAACAACAAGTCCATAAAGAGGAGCTTTTTCCCCAG
GCCAACGTTCTTCCAGGTACCTATGATGTTATGTGGTCATTCTCTTGCAT
TGACTCTGTATTAGAGCATTTTTTTTGTTGAAATTTTCTGATAATCTTAA
TGAATAAGTACTCTGGCTTTTGCATTCAACATAGTTTATTCACACAATGA
GAATCAATGAACATACAAGTCCTTATATTATATCTTTAGTTTTATTAAAA
AGCTTAACTTGTTGTACCACTAGGCGCAGACAAACTGATACGTCATCTTC
ACAAACACAATATACCAATTGCTGTGGCTTCTGGTTCATTCCATAAAGAC
TACTTAGTCAAAACAACAAAGCATAGAGAATTGTTTGAACTTTTTCCAAT
CAAAGTTTTTGGGGATGATCCAGACTTAAAACGAGGAAAACCATTCCCTG
ATCAATTTATATTGACATCAAGCAAATTTGCAGATAGCCCAATACCTGAG
AATGTATTAGTTTTTGAGGATTCTTCAAATGGTGTTCTTGCGGCAAAAGC
TGCCGGTATGGGTGTGGTTATGGTTCCTGACCGAAGACTTGATGAAAAAT
TATATAATAATCCGACACAAGTTATTTTCTCACTGGAAGATTTTAAACCT
GAATTATTTGGTTTTCCACCTTATGAATAGTGTTGTCTTGTCTTTAGTAT
TGTGTAATTTTATACAAGGAAAAATTTTGATAATTTGTTGGTGTTTTAAT
TATTATGAATATCTAGTTTTAATTCACATTTTATTTTTTTTAGACTTTAT
ACAATCATGAAATTTTTTGAGGATCTCATTGATATTTATTAATTTTTGCA
AAATATAAGAAATATCTGTAAA Coding sequence (CDS) from alignment at sc0000073:733456..736427- >TCONS_00007099 ID=TCONS_00007099|Name=TCONS_00007099|organism=Clytia hemisphaerica|type=CDS|length=2151bp|location=Sequence derived from alignment at sc0000073:733456..736427- (Clytia hemisphaerica) GCGCAGACAAACTGATACGTCATCTTCACAAACACAATATACCAATTGCT GTGGCTTCTGGTTCATTCCATAAAGACTACTTAGTCAAAACAACAAAGCA TAGAGAATTGTTTGAACTTTTTCCAATCAAAGTTTTTGGGGATGATCCAG ACTTAAAACGAGGAAAACCATTCCCTGATCAATTTATATTGACATCAAGC AAATTTGCAGATAGCCCAATACCTGAGAATGTATTAGTTTTTGAGGATTC TTCAAATGGTGTTCTTGCGGCAAAAGCTGCCGGTATGGGTGTGGTTATGG TTCCTGACCGAAGACTTGATGAAAAATTATATAATAATCCGACACAAGTT ATTTTCTCACTGGAAGATTTTAAACCTGAATTATTTGGTTTTCCACCTTA TGAATAGATACTGAACGTATTTACACTGAGATATACGACAGAGTTGCAGA AGCCCATGGTGGCAAATATTGTTGGGAAATTAAAGTGCAGTTAATGGGTC GGCCGGGTAAAGAAGGTAATCGGTTGGCTGTCGAGTTGATGAATCTGCCC ATCACGCCTGAACAGTTTTATCAGGAACAACAAGTCCATAAAGAGGAGCT TTTTCCCCAGGCCAACGTTCTTCCAGATGGAAAATCAAAAAAGTGATAAA GATGATAAAGATGTTCTTCCAAGAAAATTTACACATGTCATCTTTGATAT GGATGGTCTCATCTTAGGCGCAGACAAACTGATACGTCATCTTCACAAAC ACAATATACCAATTGCTGTGGCTTCTGGTTCATTCCATAAAGACTACTTA GTCAAAACAACAAAGCATAGAGAATTGTTTGAACTTTTTCCAATCAAAGT TTTTGGGGATGATCCAGACTTAAAACGAGGAAAACCATTCCCTGATCAAT TTATATTGACATCAAGCAAATTTGCAGATAGCCCAATACCTGAGAATGTA TTAGTTTTTGAGGATTCTTCAAATGGTGTTCTTGCGGCAAAAGCTGCCGG TATGGGTGTGGTTATGGTTCCTGACCGAAGACTTGATGAAAAATTATATA ATAATCCGACACAAGTTATTTTCTCACTGGAAGATTTTAAACCTGAATTA TTTGGTTTTCCACCTTATGAATAGATACTGAACGTATTTACACTGAGATA TACGACAGAGTTGCAGAAGCCCATGGTGGCAAATATTGTTGGGAAATTAA AGTGCAGTTAATGGGTCGGCCGGGTAAAGAAGGTAATCGGTTGGCTGTCG AGTTGATGAATCTGCCCATCACGCCTGAACAGTTTTATCAGGAACAACAA GTCCATAAAGAGGAGCTTTTTCCCCAGGCCAACGTTCTTCCAGATGGAAA ATCAAAAAAGTGATAAAGATGATAAAGATGTTCTTCCAAGAAAATTTACA CATGTCATCTTTGATATGGATGGTCTCATCTTAGGCGCAGACAAACTGAT ACGTCATCTTCACAAACACAATATACCAATTGCTGTGGCTTCTGGTTCAT TCCATAAAGACTACTTAGTCAAAACAACAAAGCATAGAGAATTGTTTGAA CTTTTTCCAATCAAAGTTTTTGGGGATGATCCAGACTTAAAACGAGGAAA ACCATTCCCTGATCAATTTATATTGACATCAAGCAAATTTGCAGATAGCC CAATACCTGAGAATGTATTAGTTTTTGAGGATTCTTCAAATGGTGTTCTT GCGGCAAAAGCTGCCGGTATGGGTGTGGTTATGGTTCCTGACCGAAGACT TGATGAAAAATTATATAATAATCCGACACAAGTTATTTTCTCACTGGAAG ATTTTAAACCTGAATTATTTGGTTTTCCACCTTATGAATAGATACTGAAC GTATTTACACTGAGATATACGACAGAGTTGCAGAAGCCCATGGTGGCAAA TATTGTTGGGAAATTAAAGTGCAGTTAATGGGTCGGCCGGGTAAAGAAGG TAATCGGTTGGCTGTCGAGTTGATGAATCTGCCCATCACGCCTGAACAGT TTTATCAGGAACAACAAGTCCATAAAGAGGAGCTTTTTCCCCAGGCCAAC GTTCTTCCAGATGGAAAATCAAAAAAGTGATAAAGATGATAAAGATGTTC TTCCAAGAAAATTTACACATGTCATCTTTGATATGGATGGTCTCATCTTA G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007099-exon-sc0000073-1575043694:735703..736427 | TCONS_00007099-exon-sc0000073-1575043694:735703..736427 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1575043694:734745..735609 | TCONS_00007099-exon-sc0000073-1575043694:734745..735609 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1575043694:734262..734480 | TCONS_00007099-exon-sc0000073-1575043694:734262..734480 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1575043694:733456..734054 | TCONS_00007099-exon-sc0000073-1575043694:733456..734054 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1510915933:735703..736427 | TCONS_00007099-exon-sc0000073-1510915933:735703..736427 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1510915933:734745..735609 | TCONS_00007099-exon-sc0000073-1510915933:734745..735609 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1510915933:734262..734480 | TCONS_00007099-exon-sc0000073-1510915933:734262..734480 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1510915933:733456..734054 | TCONS_00007099-exon-sc0000073-1510915933:733456..734054 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1491911889:735703..736427 | TCONS_00007099-exon-sc0000073-1491911889:735703..736427 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1491911889:734745..735609 | TCONS_00007099-exon-sc0000073-1491911889:734745..735609 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1491911889:734262..734480 | TCONS_00007099-exon-sc0000073-1491911889:734262..734480 | Clytia hemisphaerica | exon |
TCONS_00007099-exon-sc0000073-1491911889:733456..734054 | TCONS_00007099-exon-sc0000073-1491911889:733456..734054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000073 | supercontig | sc0000073:733456..736427 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0016787 | hydrolase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0008152 |
metabolic process |
molecular_function |
GO:0016787 |
hydrolase activity |
Blast
BLAST of TCONS_00007099 vs. Swiss-Prot (Human)
Match: HDHD1 (Pseudouridine-5'-phosphatase OS=Homo sapiens GN=PUDP PE=1 SV=3) HSP 1 Score: 199.134 bits (505), Expect = 5.149e-58 Identity = 104/224 (46.43%), Postives = 150/224 (66.96%), Query Frame = 3
Query: 1542 PRKFTHVIFDMDGLILDTERIYTEIYDRVAEAHGGKYCWEIKVQLMGRPGKEGNRLAVELMNLPITPEQFYQEQQVHKEELFPQANVLPGADKLIRHLHKHNIPIAVASGSFHKDYLVKTTKHRELFELFPIKVFGDDPDLKRGKPFPDQFILTSSKFADSPIPENVLVFEDSSNXXXXXXXXXXXXXXXPDRRLDEKLYNNPTQVIFSLEDFKPELFGFPPYE 2213
P+ TH+IFDMDGL+LDTER+Y+ ++ + + KY W++K +MG+ E ++ ++++ LP++ E+ +E Q +E+FP A ++PGA+KLI HL KH IP A+A+ S + +KT++H+E F LF V GDDP+++ GKP PD F+ + +F+ P E LVFED+ NGV AA AAGM VVMVPD L L T V+ SL+DF+PELFG P YE
Sbjct: 5 PQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 228 HSP 2 Score: 111.309 bits (277), Expect = 6.411e-27 Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = 2
Query: 725 SVKKLIHHLKEHNVPIALASGSLHKDYLLKTAQHDELFQLFPIKVFGDDPDLKRGKPFPDQFILTSSKFADSPMPDNVLVFEDSPNXXXXXXXXXXXXXXXPDRRLDEKLYNNSTQVIFSLEDFKPELFGFPCYD 1129
+KLI HL++H +P ALA+ S + +KT++H E F LF V GDDP+++ GKP PD F+ + +F+ P + LVFED+PNGV AA AAGM VVMVPD L L +T V+ SL+DF+PELFG P Y+
Sbjct: 94 GAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 228
The following BLAST results are available for this feature:
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