TCONS_00007094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007094
Unique NameTCONS_00007094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007094 ID=TCONS_00007094|Name=TCONS_00007094|organism=Clytia hemisphaerica|type=transcript|length=2494bp
TAAATTTCTCGTTTTTAATACAAATCTATAGAATTAAGTCGCatgtattt
ttatttaaatGTATCGAAACAAAAATTACTCATAAATTGACATTGTGACA
ATTGTCAATGTATTTTAACCTCCTATCACTCTGTACATAACAAAGAGCTT
ATTCTTTGATGTGGAAATGTGTAGCATTGCTACATACAGGTCGATGAATG
TACAAAAGAGGCACGGTTTTTAGGAGCGCTTTGACTCATCCATAATTTAA
AATAGGCAAAATAAAGCGAGATAGAAAAAAAAGCTCGGCTGTGGGCTTTT
CACTGTATGTCGAGAGAGTGAtcgagtttttatttttttactaaaataaa
acTTAAATCACTTTTAGGTCGTAAAGCGAATATTATTAGAGTTTCATTAA
TTTGGGCTCGACTTATTTTtggtgtttgtttttgtttattggGTGTCAAC
TTGGTTCTAGTTGGCGGGACCAACTCTCTACCAAAGAAATGTTATGGTTA
AGAGACAAAGAATGATCTATTGGCAACAccatttatatatttttcttgtg
ATATGGACCATTCTCCAAGCAACTCTTCTCGCTTCTCCTTCAAACCTCGG
TGTGGATTCAACAGATTGCACCAACATCCAAGTAAACGTGTTGACGTATA
TGACCACTGCTGGTCAAGTTAACATCAATGGCACATGTTCGAAAACGAAT
GCCGACGTCGTCGCAAATGTTATCACGTACGGTTCAGTGTTAACGTTAGC
TAACTCGTGTGATATTGAATCGACGGATGACGGCAACGGCGTGACGACTT
TTACCCTTCTCTTTAACGTGTACAATAAAGACCCGGCCACGAACTTTGAC
GCTGGATTACAGACTGTAGAAGTTCAATGCACTAACACTTTAAATTCGAA
TGTCAGTCTGACAAACAATACGCAAACGTCTTATAGAGTGACTGGAATAG
CTCAAGcgTCAGTTCTTTCTTCTTCGACGTTCGAATCTAAGATCACAATG
ACGGTACCTAAAACTGAATATAAAGTCGGCGAATACGTCCTTGTCTCTAT
CAACATGGAAAGCGAGCCTGTCTCTCTCAAAATATCGCCTCAAATGTGTC
GCGCGGCCAGTGCGGCCTCAGGTGGAACGACTTACGATCTCGTTAGTAGT
AGATGTGCAGTAGACCCGGGAACGACTGTGACGCGCATCAACGAAAGGCA
AACTGACGTCAAATTTGAAGCGTTTTATTTCCTGAACGCAGGTGTAGAAA
TCTATCTAGAATGCGAAATTCTTGTTTGTCTTGCTGACTCTGTGGAAGCT
AATTGTGGCACATGTAGCTCTTCTAAGCGACGTCGGCGTCGAAGTGCCGA
GGATGATTACCATCTCATTAGATCTCAAGTTTTCATTGTTCATCCTAAAG
AAATTGAAGCAAAGAATGCAAACAAATCTCGACCAATCCAGTTTTTGAAA
GGTCGTTCTCCAACACACCCTTTCGACAGGGGCGTCAAAAGGGGCGTATA
TTCCGAACGAATCCATGTTTTGGTAGTCATTGTATTTCTTTCATCGTTGG
CTTTTCTATTGATTCTGGCGTGCATTAAGAAGCAGTATGATCTTCGAAAA
TATGAGAAAGCATTACAAGACCAAACATCACTGGTAGCTCATGAAGAACT
TTGTTTTCCTGATGACGCGAAAGAGACCAAAGATATAAACCAGCTGATAT
AATGTGAACGAAAAGAAAGACCTTATTAGTACTTCTTCATGTCTAGGGAG
TGATATTTTATACGCTATCCGTTTTCTTGGATATTCTCTTCccccttgca
ttttcttacTATTAATGTGcttttctttcaaattcttCATCAAATCTTCC
ATTCTGTAGTTGCTATAGGAGAGTGGGCCCGGTCCAAAACGAGGCTCACA
ACTGTTTTTAATTTATCGACAATTAAAAAGTTCAAGTGATAATATGAAGA
GGTTCCACGCGAATTAGCATTCATGATTTATTTTACTGACACACTCGAGT
AAAGAAAgcaggaaatttgaaaatatagcTGCATTTTATAGAGCAGAAGT
AGTTTCTTAGAGATATAGGACATTAATAATTTTGACAAATagtacccctt
tttttttaaagaaaaagaagttttcattttatgttACCATGATTTAATTA
TATTAATgataatttttcgttttttgtttctttgtagatttgtttgttta
tgtgtttgttttatcaaaacttCTTTTGTTGTTCATAGTAAACAAAACAT
TCTTTTGTTGTTCAtagtaaacaaaacattttgctCGAATCCATCTCCCT
CCAAATCTCTACCAACTTctgaaaaaatcatttctcgAGTGGtacaacca
ctgacctttatataaccctggaccaagtaatatctgccatctttgattgg
agtttttttagaattggtacccaaggagaagccattgcaatgctaaaaat
taacgtctaacgccgctacatcatcaaaagaatttgaggaaaag
Run BLAST on NCBI

transcript from alignment at sc0000073:690223..696588-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007094 ID=TCONS_00007094|Name=TCONS_00007094|organism=Clytia hemisphaerica|type=transcript|length=6366bp|location=Sequence derived from alignment at sc0000073:690223..696588- (Clytia hemisphaerica)
TAAATTTCTCGTTTTTAATACAAATCTATAGAATTAAGTCGCATGTATTT
TTATTTAAATGTATCGAAACAAAAATTACTCATAAATTGACATTGTGACA
ATTGTCAATGTATTTTAACCTCCTATCACTCTGTACATAACAAAGAGCTT
ATTCTTTGATGTGGAAATGTGTAGCATTGCTACATACAGGTCGATGAATG
TACAAAAGAGGCACGGTTTTTAGGAGCGCTTTGACTCATCCATAATTTAA
AATAGGCAAAATAAAGCGAGATAGAAAAAAAAGCTCGGCTGTGGGCTTTT
CACTGTATGTCGAGAGAGTGATCGAGTTTTTATTTTTTTACTAAAATAAA
ACTTAAATCACTTTTAGGTCGTAAAGCGAATATTATTAGAGTTTCATTAA
TTTGGGCTCGACTTATTTTTGGTGTTTGTTTTTGTTTATTGGGTGTCAAC
TTGGTTCTAGTTGGCGGGACCAACTCTCTACCAAAGAAATGTTATGGTTA
AGGTGAGAAAACTCTTGCTTTGTTAAACTTCCTACTCTGTTGTCTTATCT
TTTATCAATTATGCAATTATAGACTCCGGTCAACGATGGACTGTCCCTTT
TGGGAATAGAATTAATGTATAAGATAGTCCAAGAAACTAAAAATGTTATG
TATATAATGAATGGGAAAGTTTAGAATAGGATTTATGATTTAATGAAGTT
TAAGGAAGTTGTGTTTCAGGGATTTTCCGATCTTGAAAGCAACTGCTTGA
ATCCAATGATAACTAGATTTTTGGTCTAAAGAAATATATAGAATGATAAT
TGGAAACAGAGAAAGTTAAATGATATACTGACAGTTTTATGTCTTATTTA
AATAATCTTCAGTTGGAATATAATTTGTTGTTCTTGCAAATAAATTGGAG
TATATTTGTATACCCATATCTATGTTCTCACCAAGACTGTTTGGCCTAAA
AAATTATTTTTGAAAATGTTTTGATCCTGAAATTAGCATAATTTATTGAT
TTGTGAAATCATGGCAAGACAACAAATATAATTTCTGTTTAATCTCAATT
GCGACAAATGAAATACATTCAAAAATTAATATCAAGTGATATTAATTTTT
GAATGTATTTCATTTGTCGCAATTGAGATTAAACAGAAATTATATTTGTT
GTCTTGCCATGATTTCAGCAATTTCCCGATGGAATTTAATGTTCTCCTTG
TTTTTGAAATTCACGTTACCAAGGCAATGAACGACTGACTGATTTTCTGT
CTGAGTGACGCGATGTTAGACTTCCGGGAAAATCGGATATTTCTTATAAA
GCATTCCCGTTCAAACGCTCTATTTTCATTATCACTTATAACTGTCAGCT
TATTTACTGAAGACTGATTGGTCGAAATGACAAATGACATCATAATTTCC
AAATTTGACAAAAAATTATTTTAAAGTTAAAGGAACTTAGTCGATCTAAT
GATCGAAAAATTACCATTTCGTAAAAATCATCAACACTTGTTCACTTGCC
AGAGCAAAGGCCAATGAAAGTTGTCCTTCGTGACAAACTATCCGATTCAT
TCACCATTTCGATTTAAGCATGGATGCAAATTTGACATTTTTTTTCGAAC
TTTTTCTACATCTGTTTCCATGTGAATGGCCGTTTGGGAATACACATTTG
ATCCCATTGAATATTAATTTATGAGACATCCTCATACCTGTAAATATATT
TTCCTTTATCATCATAAATCTGTTTGATAATTAATTTAAATCTAAATAGT
AGAAACGAATTTCCATAGTTCATCCAATAATGTATTTTGTAATGTATTTC
ACAGAATTCCAACTTTGATAGCATTTTCATCATTTCATAACAGTTATTAT
AGGCCTCCCTGGAAACTCTAAATTACCGGACACCTGTCTTGTAGTTTCTT
TCAATTAGGAGGTTCTTTATAACTTACTTCTAACCTCATTTTTCTTTCAA
TTTCCAGAGACAAAGAATGATCTATTGGCAACACCATTTATATATTTTTC
TTGTGATATGGACCATTCTCCAAGCAACTCTTCTCGCTTCTCCTTCAAAC
CTCGGTAAGATGAACACACCCCTGTATCATTGACATTGTAGAAGTACACC
CCTGTCTCATTGACCTTGTGGAAGTACACCCTGTCTCATTGACCTTGTGG
AAGTACACCCCTGTCTCATTGACCTTGTGGAAGTACACCCCTGTCTCATT
GACCTTGTGGAAGTACACCCCTGTCTCGTTGACCTTGTGGAAGTGCACCC
CTGTCTCGAAAATCTTCCTTGAACATAACCCTGCGCTTTACTGACCTTTT
TTATAGTAAACTTTTGGGAATACGCACTTCACTTTTCTTTCAATGAACTT
TTTTGAGTATACCCTTGTCTCACTAAACCTTTAAGGAACACACCTTCGCC
TCACTGCTATCTTGGAAAACACACCCCTGTCTCATTGATCCTATTTCTCA
GCCCTTATGATATAACCAAATTCCACTGACTTTTTGGGAAAACTCTAGTA
ACAGGTTTACTTCTACTGTACTTTTAGACCTATGAGGTGAAAAAAAAACA
CATTGGTCAAATCCTTGTTGAGGTTAGAGCAGTTAGGGCTACTATTTCAA
CTTTTCCATACAATATTAAACACCAAAACATTTTTTCTCAATGTAGGTGT
GGATTCAACAGATTGCACCAACATCCAAGTAAACGTGTTGACGTATATGA
CCACTGCTGGTCAAGTTAACATCAATGGCACATGTTCGAAAACGAATGCC
GACGTCGTCGCAAATGTTATCACGTACGGTTCAGTGTTAACGTTAGCTAA
CTCGTGTGATATTGAATCGACGGATGACGGCAACGGCGTGACGACTTTTA
CCCTTCTCTTTAACGTGTACAATAAAGACCCGGCCACGAACTTTGACGCT
GGATTACAGACTGTAGAAGTTCAATGCACTAACACTTTAAATTCGAATGT
CAGTCTGACAAACAATACGCAAACGTCTTATAGAGTGACTGGAATAGCTC
AAGGTAAGGTCTACTCTGTTTTTCGATCGTCACACGGTAAAGAAATCTTT
TCCCGTGGTGCATCATCGCTCTATTGTTTGTCATATATTTATTTCAAAGC
TAGGTTCATTAAAGTTAAATCATGCGTATAGTTTTAAATTGGGGACTACT
GTAGCAATCAAAATAACCTAGCTAATGATTCTTGATAAATTCAAAGTGGA
TGAAAATATTAACAAAAATAATTTGATGACTATTCCTTCTGTTGTCCTGA
TTGAACCATTTTTGCATGCGTGAGCATTCAAATATTTATCATCCTAATCC
TTGATGAAGGGAAAGACAAAAGAAGAGTTAGCAAAGGTCTGGATATTTTG
AAAAAAAATTCCGCTAAGCCAAATGTTTACTAAACAATTTTGAAGTAGTT
CGACCCTTTTTACTCTAAATGGTCTGCTCCATTAAAAAACCATACAGGGG
GTGGACGAATGGTAAAATTTCCAAAAATACCCTTGAAAAAGTTCTTTTAT
ACCTTAAAGCGAGGGTGGACGAACTAAAATCAGTCTTTTATCCCTGGAAA
TTTGAGGAAAATCTTAGAATGACTTTTTACCCCTTTGAAAAAATGAAAAA
ACACTCTCTGGAAATTTTTCTCGGATTACTCTCTGGAAATGTTGGTCCAC
TTCCCCCCCTGTATGGATTTAAACTGGAATGGCCCAATAAAAAAAGTAGG
TTTATGACTTTGTTACCATAATATCCTTCATGGCAAACATTTTGAAAATC
CAAACAATACTCGCCTCAAAAGATGGCCAAGTAGACTTGAGTTTCAACAT
CAATTTGCATCTTATTCAAGTTTTTTTATAAGAACATCCAAAATGTCTGA
ATATTCTTAACTTTTTGAGTTTTAAGCCTGAAAATGTTCTTAACATGTTC
GTAACATGTTCTGCTTTTCATCATTTTCTGAGTATTTTTGTCCATTTTCC
TATAAAATCGAGTCTTTTAAAGTCCGCAAAGCCTTAAAATGTTTTTCCTA
ATATTTAGCCATCGAAGTCTAATGTTCTTATATAGTTTGTTCTTATTAAT
AAAACGTGTATGATAAAACAAATCGAAAATCACAGAAATTATTTTTTCTT
TTCAGCGTCAGTTCTTTCTTCTTCGACGTTCGAATCTAAGATCACAATGA
CGGTACCTAAAACTGAATATAAAGTCGGCGAATACGTCCTTGTCTCTATC
AACATGGAAAGCGAGCCTGTCTCTCTCAAAATATCGCCTCAAATGTGTCG
CGCGGCCAGTGCGGCCTCAGGTGGAACGACTTACGATCTCGTTAGTAGTA
GGTACGTTGAAGGTTTTTTCTACTTTATTCGTAGATATATTATTTCTCCT
TAAGTCTGAACTCCTTCCAATTTTAGTTTTTCCATAGCCTCCCAGACGGC
ATACAACGTCAAAACAACGTTCATGTGACATTCATAGCGTCTGAATAACG
TTATTTAAACGTTATAACAACGTTGTGTGTTTTTTACCTTGATTTTTGTA
AGTTATTCCTGGCAAGTTATTTGCTAGATGAACCTCAAGACACAAAAATC
GGTTTTCCACGAGCAAATCTCAAGAATCTATTGACAATTTAATTTTTTTT
ATCTCGTACCAAGTTTTTGACGTTTTACTCCGAGAAGTTACAACAAAAAC
TATTCATTTATAAATTCGATTTTCAATTTTCTGTACCTATAGATCTCTCA
GAGATTCACTGATCATTTAATATTTTCTCTCAACAGATGTGCAGTAGACC
CGGGAACGACTGTGACGCGCATCAACGAAAGGCAAACTGACGTCAAATTT
GAAGCGTTTTATTTCCTGAACGCAGGTGTAGAAATCTATCTAGAATGCGA
AATTCTTGTTTGTCTTGCTGACTCTGTGGAAGCTAATTGTGGCACATGTA
GCTCTTCTAAGCGACGTCGGCGTCGAAGTGCCGAGGATGATTACCATCTC
ATTAGATCTCAAGTTTTCATTGTTCATCCTAAAGAAATTGAAGCAAAGAA
TGGTGAGTAACTATCTTTTAAAGCCTGGGCCCCGAGTCCTAAAAATGTTT
TCTTTTCGTTCATGTTGTTTGTTTTGATTAATTTTTTTCGATTTTGGCAA
ATTTAAGGACTTAATAGTATTTCTAAATTGTTGACCGTCTTATTCCCAGT
GGATGACTTGATTTCCGATGTTTACTGATGCGTTATATGATATTCTCTGG
TGAATTCGGCTCTGGGAAAGAGGTTTATTGGTCAACAGAATTCTCTGCAT
ATTCTTTCAACCTTTTAATTACTTTTCTCTTTATTTTTAGCAAACAAATC
TCGACCAATCCAGTTTTTGAAAGGTCGTTCTCCAACACACCCTTTCGACA
GGGGCGTCAAAAGGGGCGTATATTCCGAACGAATCCATGTTTTGGTAGTC
ATTGTATTTCTTTCATCGTTGGCTTTTCTATTGATTCTGGCGTGCATTAA
GAAGCAGTATGATCTTCGAAAATATGAGAAAGCATTACAAGACCAAACAT
CACTGGTAGCTCATGAAGAACTTTGTTTTCCTGATGACGCGAAAGAGACC
AAAGATATAAACCAGCTGATATAATGTGAACGAAAAGAAAGACCTTATTA
GTACTTCTTCATGTCTAGGGAGTGATATTTTATACGCTATCCGTTTTCTT
GGATATTCTCTTCCCCCTTGCATTTTCTTACTATTAATGTGCTTTTCTTT
CAAATTCTTCATCAAATCTTCCATTCTGTAGTTGCTATAGGAGAGTGGGC
CCGGTCCAAAACGAGGCTCACAACTGTTTTTAATTTATCGACAATTAAAA
AGTTCAAGTGATAATATGAAGAGGTTCCACGCGAATTAGCATTCATGATT
TATTTTACTGACACACTCGAGTAAAGAAAGCAGGAAATTTGAAAATATAG
CTGCATTTTATAGAGCAGAAGTAGTTTCTTAGAGATATAGGACATTAATA
ATTTTGACAAATAGTACCCCTTTTTTTTTAAAGAAAAAGAAGTTTTCATT
TTATGTTACCATGATTTAATTATATTAATGATAATTTTTCGTTTTTTGTT
TCTTTGTAGATTTGTTTGTTTATGTGTTTGTTTTATCAAAACTTCTTTTG
TTGTTCATAGTAAACAAAACATTCTTTTGTTGTTCATAGTAAACAAAACA
TTTTGCTCGAATCCATCTCCCTCCAAATCTCTACCAACTTCTGAAAAAAT
CATTTCTCGAGTGGTACAACCACTGACCTTTATATAACCCTGGACCAAGT
AATATCTGCCATCTTTGATTGGAGTTTTTTTAGAATTGGTACCCAAGGAG
AAGCCATTGCAATGCTAAAAATTAACGTCTAACGCCGCTACATCATCAAA
AGAATTTGAGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003965XLOC_003965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007094-exon-sc0000073-1575043694:696087..696588TCONS_00007094-exon-sc0000073-1575043694:696087..696588Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1575043694:694535..694631TCONS_00007094-exon-sc0000073-1575043694:694535..694631Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1575043694:693586..693942TCONS_00007094-exon-sc0000073-1575043694:693586..693942Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1575043694:692288..692483TCONS_00007094-exon-sc0000073-1575043694:692288..692483Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1575043694:691587..691852TCONS_00007094-exon-sc0000073-1575043694:691587..691852Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1575043694:690223..691298TCONS_00007094-exon-sc0000073-1575043694:690223..691298Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1510915933:696087..696588TCONS_00007094-exon-sc0000073-1510915933:696087..696588Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1510915933:694535..694631TCONS_00007094-exon-sc0000073-1510915933:694535..694631Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1510915933:693586..693942TCONS_00007094-exon-sc0000073-1510915933:693586..693942Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1510915933:692288..692483TCONS_00007094-exon-sc0000073-1510915933:692288..692483Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1510915933:691587..691852TCONS_00007094-exon-sc0000073-1510915933:691587..691852Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1510915933:690223..691298TCONS_00007094-exon-sc0000073-1510915933:690223..691298Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1491911889:696087..696588TCONS_00007094-exon-sc0000073-1491911889:696087..696588Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1491911889:694535..694631TCONS_00007094-exon-sc0000073-1491911889:694535..694631Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1491911889:693586..693942TCONS_00007094-exon-sc0000073-1491911889:693586..693942Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1491911889:692288..692483TCONS_00007094-exon-sc0000073-1491911889:692288..692483Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1491911889:691587..691852TCONS_00007094-exon-sc0000073-1491911889:691587..691852Clytia hemisphaericaexon
TCONS_00007094-exon-sc0000073-1491911889:690223..691298TCONS_00007094-exon-sc0000073-1491911889:690223..691298Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:690223..696588 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.76071	2.17692	2.02011	1.67486	3.29038	1.04055	1.46189	1.56457	0.94774	2.70203	0.643028	0.844388	0.201142	0.432199	0.954791	0.307561	274.073	339.295	0.195626	0.180713	527.478	509.866	202.808	242.179	245.769	217.317	382.199	406.06	14.0254	7.60253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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