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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007090 ID=TCONS_00007090|Name=TCONS_00007090|organism=Clytia hemisphaerica|type=transcript|length=3288bpRun BLAST on NCBI protein sequence of TCONS_00007090-protein >TCONS_00007090-protein ID=TCONS_00007090-protein|Name=TCONS_00007090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp MPLKKIRCKFCDKKEEIKDAKGLLQCATCKFYCHASCLDLPESIVPRVKTRun BLAST on NCBI transcript from alignment at sc0000073:595515..617958- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007090 ID=TCONS_00007090|Name=TCONS_00007090|organism=Clytia hemisphaerica|type=transcript|length=22444bp|location=Sequence derived from alignment at sc0000073:595515..617958- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:595515..617958- >TCONS_00007090 ID=TCONS_00007090|Name=TCONS_00007090|organism=Clytia hemisphaerica|type=CDS|length=25284bp|location=Sequence derived from alignment at sc0000073:595515..617958- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007090 vs. Swiss-Prot (Human)
Match: KAT7 (Histone acetyltransferase KAT7 OS=Homo sapiens GN=KAT7 PE=1 SV=1) HSP 1 Score: 388.267 bits (996), Expect = 9.304e-121 Identity = 198/426 (46.48%), Postives = 270/426 (63.38%), Query Frame = 2
Query: 653 CPFPGCDGSGNVKAG-SSHYTLKNCPL--------------VRDERIRERELL-------KSESPRKTPENKENPXXXXXXXXXXXXXNVLQEEHXXXXXXXXXXXAVTLKSNQTPIEHIVSSSDLDMF---QXXXXXXXXXXXXXXXXXPGQDERKIAIFGEAMIEAWYKSHYPLEFSKSRYIYICEFCLSYFKQETIYKRHMEKCIEKHPPGDEVYRQDKLSVFEVDGKSATTYCQNLCLFAKMFLDHKTLWNDVAPFLFYVMTVADDRGCQIIGYFSKEKKSFLQYNVSCILVLPQHMRKGYGKLLIEFSYLLSQVEGKVGSPERPLSDLGLMSYRKYWQDRLINYLMDYDNDNISIKEISEKMSLHPNDIISTLQFLGMLKYWKGRHMVLLRKEIIAEYSEKAQNRPDNYKTIDPNCLQWTP 1855
CP PGC+ G++ H+++ CPL RD++I ER L + + + P ++ + + L +E + T + +E++ S DLD+F Q + L+ +I G + K FG ++ WY S YP E+++ +Y+CEFCL Y K +TI +RHM KC+ KHPPGDE+YR+ +SVFEVDGK YCQNLCL AK+FLDHKTL+ DV PFLFYVMT AD+ GC +IGYFSKEK SFL YNVSCIL +PQ+MR+GYGK+LI+FSYLLS+VE KVGSPERPLSDLGL+SYR YW++ L+ YL ++ ISIKEIS++ +++P DI+STLQ L MLKYWKG+H+VL R+++I E+ K R ++ KT+DP+CL+WTP
Sbjct: 185 CPTPGCNSLGHLTGKHERHFSISGCPLYHNLSADECKVRAQSRDKQIEERMLSHRQDDNNRHATRHQAPTERQLRYKEKVAELRKKRNSGLSKEQKEKYMEHRQTYGNT---REPLLENLTSEYDLDLFRRAQARASEDLEKLRLQGQITEGSNMIKTIAFGRYELDTWYHSPYPEEYARLGRLYMCEFCLKYMKSQTILRRHMAKCVWKHPPGDEIYRKGSISVFEVDGKKNKIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVMTEADNTGCHLIGYFSKEKNSFLNYNVSCILTMPQYMRQGYGKMLIDFSYLLSKVEEKVGSPERPLSDLGLISYRSYWKEVLLRYLHNFQGKEISIKEISQETAVNPVDIVSTLQALQMLKYWKGKHLVLKRQDLIDEWIAKEAKRSNSNKTMDPSCLKWTP 607 The following BLAST results are available for this feature:
BLAST of TCONS_00007090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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