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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007074 ID=TCONS_00007074|Name=TCONS_00007074|organism=Clytia hemisphaerica|type=transcript|length=1839bpRun BLAST on NCBI protein sequence of TCONS_00007074-protein >TCONS_00007074-protein ID=TCONS_00007074-protein|Name=TCONS_00007074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp MFKFIPLSFFLVLLHQTQGQGDFNECQLQEESCSDCISFRPECAWCEDVIRun BLAST on NCBI transcript from alignment at sc0000073:452130..459433- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007074 ID=TCONS_00007074|Name=TCONS_00007074|organism=Clytia hemisphaerica|type=transcript|length=7304bp|location=Sequence derived from alignment at sc0000073:452130..459433- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:452130..459433- >TCONS_00007074 ID=TCONS_00007074|Name=TCONS_00007074|organism=Clytia hemisphaerica|type=CDS|length=12933bp|location=Sequence derived from alignment at sc0000073:452130..459433- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007074 vs. Swiss-Prot (Human)
Match: ITB7 (Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 9.996e-74 Identity = 153/465 (32.90%), Postives = 259/465 (55.70%), Query Frame = 1
Query: 496 SCSDCISFRPECAWCEDVIYTTEGKDGKPIYLAKCDTRENHNTQKC--NNVTYPESEFIPTKNEEL------KNKTRVSPQEIKIKLRPGQPVEIPIKVQIPINFPIDLYYXXXXXXXXXXXXAQIQELGKILGKELEQITEQFRLGFGGFVDKPVGPYTKTLPAEIEGILEKIEVDKKEYTYAYRNHLPLNEDINAFRSTIAGLNISFNVDSPECSLEALTQVITCQSSIGWRNKNEARRIVIITTDALFHYSGDGLLGGFPKPNDGQCHM-VNNVYNAWDRYDYPSLSQVKELMLDNDMVPIFA-TTGNEALYKKVASFIGNGAQAEPLAEDSSNIGTLIRTAYERIARTVTID-ADVPPNIKTGFSAIC-------GREKNRTQGATCNNIEIGETVTFFANLEAESCDAD-QTVEFNIKTSFDNVKVKLELICECDCGPTTVDSSDCTD-RGNLTCGKCFC 1830
SC CI P CAWC+ + +T G+ +C RE + C + P + +++ L + T+++PQ +++ LRPG+P ++ ++ +P+DLYYLMDLS SM DDL ++++LG L L+++T R+GFG FVDK V P+ T+P+++ +++ + +++ + L L D AF + ++S N+DSPE +A+ Q CQ IGWRN + R+++ T+D FH +GDG LGG P+DG CH+ N +Y+ +DYPS+ QV + + ++ PIFA T+ +Y++++ I A E L+EDSSN+ LI AY ++ TVT++ + +PP + + + C G+ ++R Q CN++ I +TVTF+ +L+A C + + + + V+L +C+C+C T + C+D +G+L CG C C
Sbjct: 50 SCQKCILSHPSCAWCKQLNFTASGE----AEARRCARREELLARGCPLEELEEPRGQQEVLQDQPLSQGARGEGATQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPC-PTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRNVS---RLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQELSKLIPKSAVGE-LSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQ---CNHVRINQTVTFWVSLQATHCLPEPHLLRLRALGFSEELIVELHTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSC 502 The following BLAST results are available for this feature:
BLAST of TCONS_00007074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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