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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007070 ID=TCONS_00007070|Name=TCONS_00007070|organism=Clytia hemisphaerica|type=transcript|length=645bpRun BLAST on NCBI protein sequence of TCONS_00007070-protein >TCONS_00007070-protein ID=TCONS_00007070-protein|Name=TCONS_00007070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp MITTVIYLILLTISAQTSDVDQCGEPVNGGWGEWSAWSICSVTCDSQKQGRun BLAST on NCBI transcript from alignment at sc0000073:429652..433508- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007070 ID=TCONS_00007070|Name=TCONS_00007070|organism=Clytia hemisphaerica|type=transcript|length=3857bp|location=Sequence derived from alignment at sc0000073:429652..433508- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:429652..433508- >TCONS_00007070 ID=TCONS_00007070|Name=TCONS_00007070|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at sc0000073:429652..433508- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007070 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 3.157e-21 Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 3
Query: 186 PVNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGEC 545
PV+G W EWS W C+ +C G Q R R C+ P ++GG PC+G + E + CN CPV+G WS W P G CSESCG G T R+C+NP + G+ C G +++ CN C
Sbjct: 4584 PVDGSWSEWSLWEECTRSCGR----GNQTRTRTCNNPSVQHGGRPCEGNAVEIIM-CNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 2 Score: 92.8189 bits (229), Expect = 5.331e-21 Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 3
Query: 189 VNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGEC 545
V+GG+ +WSAW CSVTC G Q R R C+ P+ GG PC+G S+ ++ C + CPV+G+WSEW EC+ SCG G T R C+NP Q+ G C+G AV++ CN C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGK----GIQKRSRLCNQPLPANGGKPCQG-SDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 HSP 3 Score: 91.2781 bits (225), Expect = 1.926e-20 Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 3
Query: 186 PVNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGEC 545
P++G W W++WS CSV+C GG + R R CS P+ +YGG C+G + + CN+D CP +GNWS W G CS +C G + R CDNP G C GP +++ CN C
Sbjct: 4698 PIHGKWATWASWSACSVSCG----GGARQRTRGCSDPVPQYGGRKCEGSDVQSDF-CNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 4 Score: 78.1814 bits (191), Expect = 3.412e-16 Identity = 48/120 (40.00%), Postives = 59/120 (49.17%), Query Frame = 3
Query: 186 PVNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGEC 545
P +G W WS W CS TC+ GG R R C P GG C G + ++ CN D MCPV+G+W W +CS SCG G T R+CD+P G C G +V CN C
Sbjct: 4755 PTHGNWSPWSGWGTCSRTCN----GGQMRRYRTCDNPPPSNGGRACGG-PDSQIQRCNTD-MCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 The following BLAST results are available for this feature:
BLAST of TCONS_00007070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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