TCONS_00007068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007068
Unique NameTCONS_00007068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007068 ID=TCONS_00007068|Name=TCONS_00007068|organism=Clytia hemisphaerica|type=transcript|length=2189bp
aaagattttagaAAGATTCTTCCATCTTTCAGATTTGTGGTTTTCAAACC
AGATAAGATGGAAACGACTGCTAAGACACTCCTAAAGCTGATCCGTAAAG
TCAAAACGAAATTCATCTTCTTAGCACGCAAACTACGAAaaatcgaccaa
aatttcactttcaaggACTTTTTATCTCCGTTGTTATCCAGGACGGTTGA
TGTTCTTTCCGGTTCAATCGCCTACCTGGATGGTTTGTGGAGTACCGGTT
GTCATCAAACCAAACTAATATGGAGTCAATATAAAGTGGAATTTGGTGGA
GATGTTGGATTTGGTAGAAGTTTGATACAGTGCGATAATGTGGATGGACC
TTTAGCTCTGGAGCGAGAATTTCTTGTAAATTTTCTACAAAAGAGCGTTC
AAACGAACTGTCTTGATAAACTACTTTACCCAGAGTTGATTTTCAAACTG
AATAACGAACGAAAAataatgaaagttcattttcaaagtatttttcatAT
GGAGAACTCgagcgattttcgtgatttagTTCGCATGGAATGGTTAATAT
TCTCTTTCAGAAATCATATCTCTGAAATTATTGCCACGCacgaaaattat
gaaaaaacacATTTTGAGTTCACGTATGTTGAAGCGAAAAGTGATTGTGG
TGGAACTAAAAGTAATATGTTGAAACCACGAGCGTGTATGAGGTCATTGC
ATCAGATGTTGATGGATACTTACAAGTTGTTCGATAAATTAGGCTATGGC
TACACAAATGAAGACGGGTCTGGGATGGCAGCCACAAAATTGGATGATAC
TCTCCCATGGGACCTCGACCAAGATTTCGCTTTCCGAGCGTCCAATTTCA
CTGATCTCTTAAAACACGAGAACGAGTTCGGGCTCAAAGGAATGCATTTC
AAAACAGACATCGACAAACCATGCTTGAAGAATGCGAGTGTGTCAAACGG
ATTAATCGGCGATTCTCCGAAGTGGACATGTGGTTATATCGGAGTCAGGG
GCAACACTTGGCGATTAGAAGCATGGGGAGAGTACGTTTTAATAGGTGAT
TTCTATCAGCCGTGGAATTTACACCCGTTTTATAAAAACGTTTTCCCGCC
AAACCGAATAATCGGTGAAGACACTAAAGTTCATATGAGAGATCACTGGT
CTCCAAACCGCCCTAATCCTGGATTATACGCCCGTTCTCATTATGGTTAT
GATGTATTGAAACATGCTAAACATTGGATAGATGGCGGTTCGAATCGAGG
CTACAACAGTTGGGGAGATTACGTCACAAAGCCTCGTTTTGAGGATTGCC
CTGTTGAAGGACATCATCTTTGTTTGAACCAATATTTGGCAGATGGAAAC
ATTCAATTCCAACACCCTTGGGCATGATAGATGGCATTTTGGGCGAGTAA
CAGTAAATTCAATAAGGACAACGAAGAGGACAAACAAAACGAGTTCATTA
ACACGAAAAATTTTATTACTACTTGTTCAGTAGGGGGTAGCATcgcaaaa
aaatgtaagaaaataatataatacacTATGTAATCCATATATAATTTATA
TATTATAAGAAGAGCTTACTACGCACGTATAACGTAATTAGTACGTAGCA
TGTTATAATAATGTTCTGTGTTTTCAATATCTACATTGCttgcaaaaaaa
agagaaatatatAAACTTTGTGAATTTCTcttaaaaataactaaaaactG
AACTAAAAATTTTCACCTTGCATATTCAAACAATGAGCTTGCAAATTTGA
AAGAATTCGTGATTGAGGAGTGGTTGGCTGTCTCAAAATACACTTTTGGT
TCCTAGCCCAACATTTTTTATATACCTTTCGATGAAGCGATATTAAAATT
GGTTTGTGTTGTAAAGTTAGTacaattgacgctctctaatttgacgttct
attattcgataatattgaaattcactgtcaacaagaaactctcataaacg
acgctctacttttcgatacgctcccttattcgatgaaaatctaattgCCC
TCGAAAGTCGGATTAGGGAGCGTCAGCTGTACTTTCATAGCTTTACGTAC
AATTAGGAACGTTTAAAATTACCACTTCGTCAAGAGCAGTTGGTTAGCAT
GGTCATTGATCTGATCGCTTTGAACAGGTTCAAACATAAACTAAAAAGAT
CCAAATAAACGAAAAAGATCACTCAAAGATAAAGTAAAA
Run BLAST on NCBI

protein sequence of TCONS_00007068-protein

>TCONS_00007068-protein ID=TCONS_00007068-protein|Name=TCONS_00007068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
KDFRKILPSFRFVVFKPDKMETTAKTLLKLIRKVKTKFIFLARKLRKIDQ
NFTFKDFLSPLLSRTVDVLSGSIAYLDGLWSTGCHQTKLIWSQYKVEFGG
DVGFGRSLIQCDNVDGPLALEREFLVNFLQKSVQTNCLDKLLYPELIFKL
NNERKIMKVHFQSIFHMENSSDFRDLVRMEWLIFSFRNHISEIIATHENY
EKTHFEFTYVEAKSDCGGTKSNMLKPRACMRSLHQMLMDTYKLFDKLGYG
YTNEDGSGMAATKLDDTLPWDLDQDFAFRASNFTDLLKHENEFGLKGMHF
KTDIDKPCLKNASVSNGLIGDSPKWTCGYIGVRGNTWRLEAWGEYVLIGD
FYQPWNLHPFYKNVFPPNRIIGEDTKVHMRDHWSPNRPNPGLYARSHYGY
DVLKHAKHWIDGGSNRGYNSWGDYVTKPRFEDCPVEGHHLCLNQYLADGN
IQFQHPWA
Run BLAST on NCBI

transcript from alignment at sc0000073:389911..392486-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007068 ID=TCONS_00007068|Name=TCONS_00007068|organism=Clytia hemisphaerica|type=transcript|length=2576bp|location=Sequence derived from alignment at sc0000073:389911..392486- (Clytia hemisphaerica)
AAAGATTTTAGAAAGATTCTTCCATCTTTCAGATTTGTGGTTTTCAAACC
AGATAAGATGGAAACGACTGCTAAGACACTCCTAAAGCTGATCCGTAAAG
TCAAAACGAAATTCATCTTCTTAGCACGCAAACTACGAAAAATCGACCAA
AATTTCACTTTCAAGGACTTTTTATCTCCGTTGTTATCCAGGACGGTTGA
TGTTCTTTCCGGTTCAATCGCCTACCTGGATGGTTTGTGGAGTACCGGTT
GTCATCAAACCAAACTAATATGGAGTCAATATAAAGTGGAATTTGGTGGA
GATGTTGGATTTGGTAGAAGTTTGATACAGTGCGATAATGTGGATGGACC
TTTAGCTCTGGAGCGAGAATTTCTTGTAAATTTTCTACAAAAGAGCGTTC
AAACGAACTGTCTTGATAAACTACTTTACCCAGAGTTGATTTTCAAACTG
AATAACGAACGAAAAATAATGAAAGTTCATTTTCAAAGTATTTTTCATAT
GGAGAACTCGAGCGATTTTCGTGATTTAGTTCGCATGGAATGGTTAATAT
TCTCTTTCAGAAATCATATCTCTGAAATTATTGCCACGCACGAAAATTAT
GAAAAAACACATTTTGAGTTCACGTATGTTGAAGCGAAAAGTGATTGTGG
TGGAACTAAAAGTAATATGTTGAAACCACGAGCGTGTATGAGGTCATTGC
ATCAGATGTTGATGGATACTTACAAGTTGTTCGATAAATTAGGCTATGGC
TACACAAATGAAGACGGGTCTGGTTAGTATCTTTCCTTTACAAAGCATCG
TCCTAACAAAACCTTGACCACAATTAGCCTCTTATCTTTCACCAAAATAG
ACTGGGTTCGAATCACCGGATTATTCACAAGCTTACGATGTAGTGACACA
GTCAAAAGAGTACTATCAACCAAATCCTGAGCTCGACTAATGAGGTTGAT
GTTTCTTTGCCTTAGACTGCTGAGTTTCTTTATAATTGTTTGTTCGTTAG
AACAAGGGAAAATGCAAAACTTATACCAAGTTGCCCATGCTTATCACACT
ACCATAAGTAGAAATATAATTGCTCTGGTTGGGAAAAGGGCACACCTTTT
CAAAAGTACATCACAGTTTAGTAAGCTTTCTATAGAATGATTAATTTCTA
TTTTTCTAGGGATGGCAGCCACAAAATTGGATGATACTCTCCCATGGGAC
CTCGACCAAGATTTCGCTTTCCGAGCGTCCAATTTCACTGATCTCTTAAA
ACACGAGAACGAGTTCGGGCTCAAAGGAATGCATTTCAAAACAGACATCG
ACAAACCATGCTTGAAGAATGCGAGTGTGTCAAACGGATTAATCGGCGAT
TCTCCGAAGTGGACATGTGGTTATATCGGAGTCAGGGGCAACACTTGGCG
ATTAGAAGCATGGGGAGAGTACGTTTTAATAGGTGATTTCTATCAGCCGT
GGAATTTACACCCGTTTTATAAAAACGTTTTCCCGCCAAACCGAATAATC
GGTGAAGACACTAAAGTTCATATGAGAGATCACTGGTCTCCAAACCGCCC
TAATCCTGGATTATACGCCCGTTCTCATTATGGTTATGATGTATTGAAAC
ATGCTAAACATTGGATAGATGGCGGTTCGAATCGAGGCTACAACAGTTGG
GGAGATTACGTCACAAAGCCTCGTTTTGAGGATTGCCCTGTTGAAGGACA
TCATCTTTGTTTGAACCAATATTTGGCAGATGGAAACATTCAATTCCAAC
ACCCTTGGGCATGATAGATGGCATTTTGGGCGAGTAACAGTAAATTCAAT
AAGGACAACGAAGAGGACAAACAAAACGAGTTCATTAACACGAAAAATTT
TATTACTACTTGTTCAGTAGGGGGTAGCATCGCAAAAAAATGTAAGAAAA
TAATATAATACACTATGTAATCCATATATAATTTATATATTATAAGAAGA
GCTTACTACGCACGTATAACGTAATTAGTACGTAGCATGTTATAATAATG
TTCTGTGTTTTCAATATCTACATTGCTTGCAAAAAAAAGAGAAATATATA
AACTTTGTGAATTTCTCTTAAAAATAACTAAAAACTGAACTAAAAATTTT
CACCTTGCATATTCAAACAATGAGCTTGCAAATTTGAAAGAATTCGTGAT
TGAGGAGTGGTTGGCTGTCTCAAAATACACTTTTGGTTCCTAGCCCAACA
TTTTTTATATACCTTTCGATGAAGCGATATTAAAATTGGTTTGTGTTGTA
AAGTTAGTACAATTGACGCTCTCTAATTTGACGTTCTATTATTCGATAAT
ATTGAAATTCACTGTCAACAAGAAACTCTCATAAACGACGCTCTACTTTT
CGATACGCTCCCTTATTCGATGAAAATCTAATTGCCCTCGAAAGTCGGAT
TAGGGAGCGTCAGCTGTACTTTCATAGCTTTACGTACAATTAGGAACGTT
TAAAATTACCACTTCGTCAAGAGCAGTTGGTTAGCATGGTCATTGATCTG
ATCGCTTTGAACAGGTTCAAACATAAACTAAAAAGATCCAAATAAACGAA
AAAGATCACTCAAAGATAAAGTAAAA

Coding sequence (CDS) from alignment at sc0000073:389911..392486-

>TCONS_00007068 ID=TCONS_00007068|Name=TCONS_00007068|organism=Clytia hemisphaerica|type=CDS|length=2754bp|location=Sequence derived from alignment at sc0000073:389911..392486- (Clytia hemisphaerica)
GGATGGCAGCCACAAAATTGGATGATACTCTCCCATGGGACCTCGACCAA
GATTTCGCTTTCCGAGCGTCCAATTTCACTGATCTCTTAAAACACGAGAA
CGAGTTCGGGCTCAAAGGAATGCATTTCAAAACAGACATCGACAAACCAT
GCTTGAAGAATGCGAGTGTGTCAAACGGATTAATCGGCGATTCTCCGAAG
TGGACATGTGGTTATATCGGAGTCAGGGGCAACACTTGGCGATTAGAAGC
ATGGGGAGAGTACGTTTTAATAGGTGATTTCTATCAGCCGTGGAATTTAC
ACCCGTTTTATAAAAACGTTTTCCCGCCAAACCGAATAATCGGTGAAGAC
ACTAAAGTTCATATGAGAGATCACTGGTCTCCAAACCGCCCTAATCCTGG
ATTATACGCCCGTTCTCATTATGGTTATGATGTATTGAAACATGCTAAAC
ATTGGATAGATGGCGGTTCGAATCGAGGCTACAACAGTTGGGGAGATTAC
GTCACAAAGCCTCGTTTTGAGGATTGCCCTGTTGAAGGACATCATCTTTG
TTTGAACCAATATTTGGCAGATGGAAACATTCAATTCCAACACCCTTGGG
CATGAAAAGATTTTAGAAAGATTCTTCCATCTTTCAGATTTGTGGTTTTC
AAACCAGATAAGATGGAAACGACTGCTAAGACACTCCTAAAGCTGATCCG
TAAAGTCAAAACGAAATTCATCTTCTTAGCACGCAAACTACGAAAAATCG
ACCAAAATTTCACTTTCAAGGACTTTTTATCTCCGTTGTTATCCAGGACG
GTTGATGTTCTTTCCGGTTCAATCGCCTACCTGGATGGTTTGTGGAGTAC
CGGTTGTCATCAAACCAAACTAATATGGAGTCAATATAAAGTGGAATTTG
GTGGAGATGTTGGATTTGGTAGAAGTTTGATACAGTGCGATAATGTGGAT
GGACCTTTAGCTCTGGAGCGAGAATTTCTTGTAAATTTTCTACAAAAGAG
CGTTCAAACGAACTGTCTTGATAAACTACTTTACCCAGAGTTGATTTTCA
AACTGAATAACGAACGAAAAATAATGAAAGTTCATTTTCAAAGTATTTTT
CATATGGAGAACTCGAGCGATTTTCGTGATTTAGTTCGCATGGAATGGTT
AATATTCTCTTTCAGAAATCATATCTCTGAAATTATTGCCACGCACGAAA
ATTATGAAAAAACACATTTTGAGTTCACGTATGTTGAAGCGAAAAGTGAT
TGTGGTGGAACTAAAAGTAATATGTTGAAACCACGAGCGTGTATGAGGTC
ATTGCATCAGATGTTGATGGATACTTACAAGTTGTTCGATAAATTAGGCT
ATGGCTACACAAATGAAGACGGGTCTGGGATGGCAGCCACAAAATTGGAT
GATACTCTCCCATGGGACCTCGACCAAGATTTCGCTTTCCGAGCGTCCAA
TTTCACTGATCTCTTAAAACACGAGAACGAGTTCGGGCTCAAAGGAATGC
ATTTCAAAACAGACATCGACAAACCATGCTTGAAGAATGCGAGTGTGTCA
AACGGATTAATCGGCGATTCTCCGAAGTGGACATGTGGTTATATCGGAGT
CAGGGGCAACACTTGGCGATTAGAAGCATGGGGAGAGTACGTTTTAATAG
GTGATTTCTATCAGCCGTGGAATTTACACCCGTTTTATAAAAACGTTTTC
CCGCCAAACCGAATAATCGGTGAAGACACTAAAGTTCATATGAGAGATCA
CTGGTCTCCAAACCGCCCTAATCCTGGATTATACGCCCGTTCTCATTATG
GTTATGATGTATTGAAACATGCTAAACATTGGATAGATGGCGGTTCGAAT
CGAGGCTACAACAGTTGGGGAGATTACGTCACAAAGCCTCGTTTTGAGGA
TTGCCCTGTTGAAGGACATCATCTTTGTTTGAACCAATATTTGGCAGATG
GAAACATTCAATTCCAACACCCTTGGGCATGAAAAGATTTTAGAAAGATT
CTTCCATCTTTCAGATTTGTGGTTTTCAAACCAGATAAGATGGAAACGAC
TGCTAAGACACTCCTAAAGCTGATCCGTAAAGTCAAAACGAAATTCATCT
TCTTAGCACGCAAACTACGAAAAATCGACCAAAATTTCACTTTCAAGGAC
TTTTTATCTCCGTTGTTATCCAGGACGGTTGATGTTCTTTCCGGTTCAAT
CGCCTACCTGGATGGTTTGTGGAGTACCGGTTGTCATCAAACCAAACTAA
TATGGAGTCAATATAAAGTGGAATTTGGTGGAGATGTTGGATTTGGTAGA
AGTTTGATACAGTGCGATAATGTGGATGGACCTTTAGCTCTGGAGCGAGA
ATTTCTTGTAAATTTTCTACAAAAGAGCGTTCAAACGAACTGTCTTGATA
AACTACTTTACCCAGAGTTGATTTTCAAACTGAATAACGAACGAAAAATA
ATGAAAGTTCATTTTCAAAGTATTTTTCATATGGAGAACTCGAGCGATTT
TCGTGATTTAGTTCGCATGGAATGGTTAATATTCTCTTTCAGAAATCATA
TCTCTGAAATTATTGCCACGCACGAAAATTATGAAAAAACACATTTTGAG
TTCACGTATGTTGAAGCGAAAAGTGATTGTGGTGGAACTAAAAGTAATAT
GTTGAAACCACGAGCGTGTATGAGGTCATTGCATCAGATGTTGATGGATA
CTTACAAGTTGTTCGATAAATTAGGCTATGGCTACACAAATGAAGACGGG
TCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003954XLOC_003954Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007068-proteinTCONS_00007068-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007068-exon-sc0000073-1575043694:391715..392486TCONS_00007068-exon-sc0000073-1575043694:391715..392486Clytia hemisphaericaexon
TCONS_00007068-exon-sc0000073-1575043694:389911..391327TCONS_00007068-exon-sc0000073-1575043694:389911..391327Clytia hemisphaericaexon
TCONS_00007068-exon-sc0000073-1510915933:391715..392486TCONS_00007068-exon-sc0000073-1510915933:391715..392486Clytia hemisphaericaexon
TCONS_00007068-exon-sc0000073-1510915933:389911..391327TCONS_00007068-exon-sc0000073-1510915933:389911..391327Clytia hemisphaericaexon
TCONS_00007068-exon-sc0000073-1491911889:391715..392486TCONS_00007068-exon-sc0000073-1491911889:391715..392486Clytia hemisphaericaexon
TCONS_00007068-exon-sc0000073-1491911889:389911..391327TCONS_00007068-exon-sc0000073-1491911889:389911..391327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:389911..392486 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0551493	0.0419145	0.0207187	0.181731	0.183264	0.257794	0.286354	1.23955	0.805599	0.1969	0.958153	0.0250636	0	0.559757	0.488783	0.0988264	0.0433962	0	0.0214803	0	0	0	0	0.0200278	0	0	0	0.0213567	0.02199
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top