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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007065 ID=TCONS_00007065|Name=TCONS_00007065|organism=Clytia hemisphaerica|type=transcript|length=3012bpRun BLAST on NCBI protein sequence of TCONS_00007065-protein >TCONS_00007065-protein ID=TCONS_00007065-protein|Name=TCONS_00007065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp WFKVEEINQSFKHIMLKDPHRYLMDGVQHTFQTSTYDELMSSCTTENDTKRun BLAST on NCBI transcript from alignment at sc0000073:225224..231272- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007065 ID=TCONS_00007065|Name=TCONS_00007065|organism=Clytia hemisphaerica|type=transcript|length=6049bp|location=Sequence derived from alignment at sc0000073:225224..231272- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:225224..231272- >TCONS_00007065 ID=TCONS_00007065|Name=TCONS_00007065|organism=Clytia hemisphaerica|type=CDS|length=18390bp|location=Sequence derived from alignment at sc0000073:225224..231272- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007065 vs. Swiss-Prot (Human)
Match: ANKY1 (Ankyrin repeat and MYND domain-containing protein 1 OS=Homo sapiens GN=ANKMY1 PE=2 SV=2) HSP 1 Score: 255.758 bits (652), Expect = 3.887e-71 Identity = 170/432 (39.35%), Postives = 224/432 (51.85%), Query Frame = 3
Query: 390 TIRLLLKRGANPNASELPMSALFFAVKSADPGAVAALLEQNADTSARL--NTSYLCPLHIAVALPCMEGIEITKLLLHYGADPNLR-----DSFPEGDM---------------------TD-------GRTPLHVACSREDNFKQCQKIVRLLLEYNADPNLLCVGNAPLSLAIGSGNDLVIDTLLKYNADPSLRLTHGLGSILCVAATFQAERRRTPYERMRLIEKLMRNGADMLTPVKI--SEKYPPGTVVDYGYHVFAQDRRIACTPYHALSSVEREVYNSRRAMXXXXXXXXXXXXXXKEDEVMMQACSSEQFDDAAWNSTGRDDSCGLRFVTIKVGPVRGGVAHAARSESFIHRDLTNKSHAALSGTGSHHFKQATRKRLRYCYECGRSIGVRLTPCSRCKEVFYCSKGCKIKAWNLRHRDECAKI 1574
TI+LLL+RGA+PN +PM LF AVK+ D V LLE A T S L PLHIA ALP EG++I +LLLH D + + D++ G + TD GRT LH+AC RED+ K + IVRLLL + A+PNLL G++PLSL+I SGN+LV+ LL ADP+L LT GLGS LCVA E +R ++ LI++L+ +GAD+L PV + EK GT VDYGY F QDRRIA P+H L ERE + +R+ +LE +G +LR A AKE + W+ T + R+E + K + G +Q ++CY+CGRSIGVRL PC RC + CSK CK KAW H+ +C +
Sbjct: 529 TIKLLLRRGADPNLCCVPMQVLFLAVKAGDVDGVRLLLEHGARTDICFPPQLSTLTPLHIAAALPGEEGVQIVELLLHAITDVDAKASDEDDTYKPGKLDLLPSSLKLSNEPGPPQAYYSTDTALPEEGGRTALHMACEREDDNKCARDIVRLLLSHGANPNLLWSGHSPLSLSIASGNELVVKELLTQGADPNLPLTKGLGSALCVACDLTYEHQRNMDSKLALIDRLISHGADILKPVMLRQGEKEAVGTAVDYGYFRFFQDRRIARCPFHTLMPAERETFLARKRLLEYMGLQLRQAVFAKESQ---------------WDPT--------------------WLYLCKRAELIPSHRMKKKGPSLPRGLDVK--EQGQIPFFKFCYQCGRSIGVRLLPCPRCYGILTCSKYCKTKAWTEFHKKDCGDL 923 The following BLAST results are available for this feature:
BLAST of TCONS_00007065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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