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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007062 ID=TCONS_00007062|Name=TCONS_00007062|organism=Clytia hemisphaerica|type=transcript|length=2266bpRun BLAST on NCBI protein sequence of TCONS_00007062-protein >TCONS_00007062-protein ID=TCONS_00007062-protein|Name=TCONS_00007062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp MALMYRSSSSLARLFKPSFTTRFATTSVNAVNEKIQKKKEAALLGGGEKRRun BLAST on NCBI transcript from alignment at sc0000073:137562..170320- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007062 ID=TCONS_00007062|Name=TCONS_00007062|organism=Clytia hemisphaerica|type=transcript|length=32759bp|location=Sequence derived from alignment at sc0000073:137562..170320- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:137562..170320- >TCONS_00007062 ID=TCONS_00007062|Name=TCONS_00007062|organism=Clytia hemisphaerica|type=CDS|length=32160bp|location=Sequence derived from alignment at sc0000073:137562..170320- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007062 vs. Swiss-Prot (Human)
Match: PCCB (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=PCCB PE=1 SV=3) HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0 Identity = 366/541 (67.65%), Postives = 441/541 (81.52%), Query Frame = 3
Query: 117 MALMYRSSSSLARLFKPSFTTRFATTSV----NAVNEKIQKKKEAALLGGGEKRIKSQHKKGKLTARERLGLLLDKGTFSEYDMYMEHDCSEFGM--QDQKFTGDSVVTGHGKINGRPVFVFSQDFTVFGGSLSMAHAKKICKIMDKAMMLGCPVIGLNDSGGARIQEGVESLAGYAHIFQRNVNASGVIPQISLIMGPCAGGAVYSPAITDFTFMVKDTSYLFITGPDVVKTVTHEDVTFEDLGGAKVHTQISGVAAGAFDNDIHAISQLREFFNFLPLSNKDQSPEIPTSDPRDRLCPVLESIIPSDPLKGYDMKGVMKSVADNNELFEIMPKWAENIVIGFARMNGKTVGFVGNQPLKQAGCLDIEASTKAARFVRFLDAFNIPIVTFVDVPGFLPGVNQEHGGIIRHGAKLLYAYAEATVPKITFITRKAYGGAYDVMSSQHLRGDTNYAWPSAEVAVMGAKGAVQIIFRGSDAEKMARDEEEYVEKFANPFPAAVKGYIDDIISPNETRKKICDDXXXXXXXXXXXXXXXHGNIPL 1721
MA R ++ ARL + R A S+ +VNE+I+ K+ ALLGGG++RI +QHK+GKLTARER+ LLLD G+F E DM++EH C++FGM KF GDSVVTG G+INGR V+VFSQDFTVFGGSLS AHA+KICKIMD+A+ +G PVIGLNDSGGARIQEGVESLAGYA IF RNV ASGVIPQISLIMGPCAGGAVYSPA+TDFTFMVKDTSYLFITGPDVVK+VT+EDVT E+LGGAK HT +SGVA AF+ND+ A+ LR+FFN+LPLS++D +P DP DRL P L++I+P + K Y+M ++ SV D E FEIMP +A+NI++GFARMNG+TVG VGNQP +GCLDI +S K ARFVRF DAFNIP++TFVDVPGFLPG QE+GGIIRHGAKLLYA+AEATVPK+T ITRKAYGGAYDVMSS+HL GDTNYAWP+AE+AVMGAKGAV+IIF+G E + + EY+EKFANPFPAAV+G++DDII P+ TR +IC DL++LA K+++ P +KH NIPL
Sbjct: 1 MAAALRVAAVGARLSVLASGLRAAVRSLCSQATSVNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFFNYLPLSSQDPAPVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGH--ENVEAAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539 The following BLAST results are available for this feature:
BLAST of TCONS_00007062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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