TCONS_00007059 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007059
Unique NameTCONS_00007059
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007059 ID=TCONS_00007059|Name=TCONS_00007059|organism=Clytia hemisphaerica|type=transcript|length=993bp
TGTTAATATGAATCAATTGAAATCGATTTTTTTTCAGTGTGAAgataatc
aaaaaaatattacattaCTAAAGAAATAAAGATGTCATCCTTGATCGGTA
TTCACGCAGATACCGCATTGTGGCTGCACAACAAATTAAGAAGTGATGAA
AGTCCTTGGTCCTCTGGAAACATCGCGTCACAATTCACCAATAATATTCT
GAACGATATTTATGATTGTTTCATGCAACTGGAATCGAAAACTAAAATCA
AGATTTTGTTATCTTTGTTGGAAATCCCCCTACGTAACATGGAAGGGCTA
AAGGATTCAATCTGTCGCATTGTGGCGATAGCAGAAGAAGACATGGACGA
ATGGGTGAGGGTTGCAGCAAACATCGTTCGTGATTATCCGCAACAATTTG
TATTGGATCAACGACTTGGAAAGGTTACAACGCATTTCCAAGAAACAGTT
CACGAAGTCGTTTCTGAAAtcGAACGTATTCAGAACCCAGTCAACGCGAG
TCTCATACCAGGAGAATGTCTTTATCTGAACCGGACTGCGCTTTCCAAAA
TCATCTCCAATCCTCCCAACCCTTCTAAACATTTCACATTACgaagaaaa
ccaaaatcagcTGAACTGAGAGCGAAAATCACGCAAAAAGCGTCTGAAGC
AGCCAATCAGCGTCGCTCAATGCACTCCAGCAGCATGGGTTCAAAGTCCA
GTCTGAAGAGAACACATTCGGTACCTATGGGAGGAAAACTCCCTCCAGTG
CAACACAGTAAAAGTGGAATGTCCAAAGCTCGACCAAGGAAAACACAGAT
TTTGGAGTTTGCCGATCAACCAATTGGATTGCGCGAGCAAAAGAAACGAA
AGAAAATGCAAGTTTTGGAAGGGCCACCAACGGAAGAGACATCGAAAACA
AAGGGTAAGAAACCGCCCACCGCCTCTACAACCGCCTCTTCATCGGATAA
TGTGAAACTAGAAGAAGAGGAAGAAGTAGAGCAGGAGAAANtt
Run BLAST on NCBI

transcript from alignment at sc0000073:61117..67113-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007059 ID=TCONS_00007059|Name=TCONS_00007059|organism=Clytia hemisphaerica|type=transcript|length=5997bp|location=Sequence derived from alignment at sc0000073:61117..67113- (Clytia hemisphaerica)
TGTTAATATGAATCAATTGAAATCGATTTTTTTTCAGTGTGAAGATAATC
AAAAAAATATTACATTACTAAAGAAATAAAGATGTCATCCTTGATCGGTA
TTCACGCAGATACCGCATTGTGGCTGCACAACAAATTAAGAAGTGATGAA
AGTCCTTGGTCCTCTGGAAACATCGCGTCACAATTCACCAATAATATTCT
GAACGATATTTATGATTGTTTCATGCAACTGGAATCGAAAACTAAAATCA
AGATTTTGTTATCTTTGTTGGAAATCCCCCTACGTAACATGGAAGGGCTA
AAGGTGAGTTTGATTTGAGTGAGATTGTTCTTTGTAAAAGGTTCAAATGA
AATACTCGTATCTGCTCAAAGATGAGTGTGCATTAAGATATGTATATTCT
TAGGGCCTTGATTGTTTCAGGATTTCATTAATATTTTACCAGTGGCTTTT
ACATACCTTAAAGGAACTAATTTTAGCGAGAACTAATTTTCGTGGTCGAA
AAAAAATTCGAAAAAATCGCATTTTGCAGGAATTGATTTTCGCTGTTTTG
CCCCATTTTGAACACATTTCTTTCATTTTCCTAAGGATTTTTCATAAAAA
ATGTAAAAATTTGTAATTATGGTTCTAGTTTTCGCGGTTTTACCGAAAAA
AGCAAAACTTAGTTCCCGCGAAAATTAGTTTCCTTTAAAGGTATTCGACA
ACAAAGTTTCATTCCTTGAAACCCATAACTATTAAGGAGTTTTTCGAGCC
GTGGTAAAAACCTTTGTCAATATCAATACTTGTATACCATCGATCAAAAT
CTTCACATGTGTAACCGGGATTCAGTGTCAGTGTATTCTTATTTGTTGGA
TGAAGAATCTGCAATGTCCAATCACGTCTCAGGTTACTGCAGAATTCATC
CACGATGATGCATTGTGTTCCCGTTGTTCTTTTTTTCGCTGATACAAAGA
AAACCTCTTCAAAACACCCATCCATTTCTTTTCTGCAAAAGAAATAATTT
CTTTGGTAATACACTTTCCCATCTTCCATGAAGGACGAAATATCTTTGTA
CCATAGTTCGTAAGAAGGGTACACGTTTTGTAGAAGACCCTTTTCTCGTT
GAACGAACTTTTTTGCACCCCAAATAAGTTTATCTGTCTCCGACATGCTC
TTTTTTGTCTCTACCATTTTCGATTTCTCACTTTCTTCCTTGATTGTTTG
AACCACCTTTTCTAGAGCCTTGTTATTATTCTCCAATTCTGACATTCTTT
TGTCCATGTCTCTCAATTTGTCAGCGGTTTCGGCATTTTTCACTCCTATT
TCCGTTTCCAATCCTTTTAGTTTATCACCTTGTGCTATTCCCAAATGCTC
CAATTTGTTCCCGAATTCGTGTGAGACTCTTTGTTGTCCCTCTTGAATTT
CCTTTATCAACCTATCTAATTTCTTATCGATTTCCTGTTCCTTTTCCGTT
CCGCTTTTTCCACCGGTTCCGATCTCACTTCCTGGCTTACATGACTGTAA
TTTCATCACTTCAATGTTATGCTTTAAAGTCTGTATCATGATATCTTTTT
GAGCCATTTCTAACTCTTTGAGTCTACTTTCGTTTTGAACTTCCAAAAGT
TTGATTTTGTGCTCATAAGTCAACACTTGTATTTTCTGTTCATAATCGTC
TTTCATTTTCGACATTTCTTCTTTCATTCTTTGAATTTCATCGCCATTTT
GATTTGGTTTCAAACGCAAAGGGTCAGTAGCGCAGTGAGCAGTATCCATT
TTAAAAAGGTGATCAACTAACCGTGTTTACTCACTGTATTTTAAAAATGA
TATTACACAAATGACTTCTTATATCNTCGAAACACGAATGTGTTTACTCA
CTGTATTTTAAAAATGATATTACATAGATGACTCCTTACATCTTTTCTCC
GTGTAATAAAAACATCGGTATCGAATTTCTCTTCTCTTTGTGATCTGTAT
TAATCTGAAGTATACATTTTTTTATAAGAAACTTGGCTTCTCTACCAACG
AGAATTATCAATTGCGAACGAAACAATTTTAGCAATGTAATGACTAATGT
CGAAATCCTCTACGACATGTTTTTGGGAAATTGGGTGTTTTGGAGTTGAA
TGTTCTTAACTATTTTGACCAATTACTCTGACCATCGAAGTAATATGTTC
TTCTATAGTTCTTATAGTTCGTTTTTGACCTTTGAGCTCGAAATTGGGTT
TGCTGCTTATAAACAAAGTGTATAACTGCTTATAAACAAAGTTTATAAAT
GCATAGTGCAATTATAAATCCATTTAGCAAAACCCATTGACAATCTTTGA
AATAAGCCGTCTTCCCATCTTATATAGGTATACAGTGCTTGCTTGGCACC
CGCGTCTCCTTCGTTTACCTATAAGAATCACTTACATTAAAACTAAGACC
TTTTAACATTTATCATTTTTCTGTCACCTAGGCTTTCAATCTGCCATGTT
TCTCATTCTACAAAATTCAATCCTTCGCCTTTCTCCTTTCGCAAGATCCA
GTGACTTAGCTACCGGGTGGGGGATGGGTTGACGGTAGGGGAGAGGTACA
ATAATTTTTTGAGGAATGATGTCTTATAAATTTTCTGATACTTTATTGAC
TTTTCATTCTATTTTTCAAATTTCATTCTGAGTGAACATCATCCAATACC
TACTCGCAGTTCTCATTTCACAGAATTCAATCTGACGCGTCTATTTCTTC
AAGAATTTGTTGTATTTCTTATTTCACAGGATTCAATGTTGTCGTATTTC
TCATTTCGCAAGACTTACTCTGTCGTATTTCTCAATTCAAAAGATTCAAC
CTTTCATATTTCTCATTTCACAGGGTTCAATGTTTTCGTATTTCTCATTT
CACAGGATTCAATCTGTCGTATTTCTCAAATTCAAAAGGTTCAACCTTTC
ATATTTCTCATTTCACAGGATTCAATCTGTCGTATTTCTCAAATTCAAAA
GATTCAATCTTTCATATTTCTCATTTTACAGGATTCAATCTGTCGCATTG
TGGCGATAGCAGAAGAAGACATGGACGAATGGGTGAGGGTTGCAGCAAAC
ATCGTTCGTGATTATCCGCAACAATTTGTATTGGATCAACGACTTGGAAA
GGTTACAACGCATTTCCAAGAAACAGTTCACGAAGTCGTTTCTGAAAGTA
AGACAGTCTAACATTTCATCCAATGGAAACGACGATTACACTTTTCGTTG
TTTGACCATAACCTTTTACAAAATAATCTGCTCAAAACCCCTTTTTGAAG
ACAAGGGCCCTAGCTATTGGGGACAAGGGCCGTACAGTGGTTGGAACTTG
TGGTGTCACTAAACTTATATAAGCTTCAAAATCAAACTTTTTCCCACACT
CCTGTCTTTAAAATACCTTTTTGAATTACCATGCCTCGTTTATCCACCAA
CTCAGATCTATTCATGATATGCACCACTGGAGAGTCTTCTGAGAACTTTT
AAAATTTTCCACCCAATACGTCACTTAAACAATAGAAAAAGTGACGTATT
GGGTGGAACAAAAACAGAAAAGTTGCATAATTTCGTGAAGTCGTTGCAAT
GGTGAATATCATGAATTACTCGAATTTCAATCAGTTTTATTCTTTTTTGA
TATTTTTCAGTCGAACGTATTCAGAACCCAGTCAACGCGAGTCTCATACC
AGGAGAATGTCTTTATCTGAACCGGACTGCGCTTTCCAAAATCATCTCCA
ATCCTCCCAACCCTTCTAAACATTTCACATTACGAAGAAAACCAAAATCA
GCTGAACTGAGAGCGAAAATCACGCAAAAAGGTTCGTCAATACAAATTCT
GGTATATTGTTTACCAATCTAACACCAATTTGAACAATTCATGCAAATGA
TAAAAAGAAAGATAATTATTTAAACTAGTGACCCTAAGGACACACAATTT
TCTAAATGCTTCACTCGACCGGACGCACGGACAAACCCCTTATCATTCTT
ATCGCGGTTACTAACTTTATAATACAGCCGAGTCTCCATAACTCGAACCC
ACACGGGGACCCACACAAATTTGTTCGAGTTATGGAGTAAGGTATTGTTA
ACAGAAGGGGCGAGAAACTTGCTCGAGTTAAGGAGACGTTCAAGTAATAG
AGGTTCGAGACTCGGCTTATTACGAAATTGTTGATTCAACTTAATTATTT
TAGCGTCTGAAGCAGCCAATCAGCGTCGCTCAATGCACTCCAGCAGCATG
GGTTCAAAGTCCAGTCTGAAGAGAACACATTCGGTACCTATGGGAGGAAA
ACTCCCTCCAGTGCAACACAGTAAAAGTGGAATGTCCAAAGCTCGACCAA
GGAAAACACAGGTATTTATCACGTTTTACCTTTTTTGACGTATCTTACGG
GGGTTTCTTTTCTACTATTGTATGCATTATTCAAGATTGAACGTGTTGAC
GTTACTTTTTCCTCCCTTTTAGATTTTGGAATTTGCCGATCAACCAATTG
GATTGCGCGAGCAAAAGAAACGAAAGAAAATGCAAGGTAACCTCTTAAAC
CCAGGGAAATTGCAACTCTCTTTTTTCCAGAACATTGTTGATGTTACTAT
GCTCTGGTTTAGGCCAGACTCTTTAATTAAACTCTCAATTTTCGCAACAC
CTAATCTGTAAAAAAAATTTCGAGATTATAAACTTCTTCCGTAGTTTTGG
AAGGGCCACCATCGGAAGAGACATCGAAATCAAAGGGTAAGAAACCGCCC
ACCGCCTCTACAACCGCCTCTTCATCGGATAATGTGAAACTAGAAGAAGA
GGAAGAAGTAGAGCAGGAGAAAGATAACAAACAGAATGTTAATTCGATCG
ATCCCACCAGTGGCGGTGAACAGGTAAATTTGTTTGAAGTTATCATGGTG
TTACAATGTTTGTCATTATGCCGTGTTTTGGAAGTTTGTAAATCATAATA
ATTGTGGGGTAGCGCTTTGTTGGAAAAATNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGGGGG
TCTACAATTGGGCCTATGAATAATTTGAAGCCACTGAAGTTGAGCCCAGT
GCGTTGCGCACGTTCGACTATGATAAAAAAGAAGATAATTATTTAAACTA
GTGACCCTAAGGACACACAATTTTCTAATTGCTTCACTCGACCGGACGTA
CGGACAAACCCCTTATCATTCTTATCACGGTTACTAACTTTATAATACAG
CCGAGTCTCCATAACTCGAACCCACACGGGGTACACAAATTTGTTCGAGT
TATGGAGTAAGGTATTGTTAACAGAAGGGACGAGAAACTTGCTCGAGTTA
AGGAGACATTCCAGTTGTAGAGGTTCGAGACTCGGCTTATTACGAAATTG
TTGATTCAACTTAATTATTTTAGCGTCTGAAGCAGCCAATCAGCGTCGCT
CAATGCACTCCAGCAGCATGGGTTCAAAGTCCAGTCTGAAGAGAACACAT
TCGGTACCTATGGGAGGAAAACTCCCTCCAGTGCAACACAGTAAAAGTGG
AATGTCCAAAGCTCGACCAAGGAAAACACAGGTATTTATCACGTTTTACC
TTTTTTGACGTATCTTACGGGGGTTTCTTTTCTACTTCTTGTATGCATTA
TTCAAGATTGAACGTGTTGACGTTACTTTTTCCTCCCTTTTAGATTTTGG
AGTTTGCCGATCAACCAATTGGATTGCGCGAGCAAAAGAAACGAAAGAAA
ATGCAAGGTAACCTCTTAAAAACCAGGGAAATTGCAACTCCCTTTCCTCC
GCAGAACATTGTTGATGTTACTATGCTCTGGTTTAGGCCAGACTCTTTAA
TTAAACTCTTAATTTTCGCAACACCTAATCTATAAAAATTTTCGAGATTC
TGAACTTCTTCCGTAGTTTTGGAAGGGCCACCAACGGAAGAGACATCGAA
AACAAAGGGTAAGAAACCGCCCACCGCCTCTACAACCGCCTCTTCATCGG
ATAATGTGAAACTAGAAGAAGAGGAAGAAGTAGAGCAGGAGAAANTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003946XLOC_003946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007059-exon-sc0000073-1575043694:66811..67113TCONS_00007059-exon-sc0000073-1575043694:66811..67113Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1575043694:63967..64132TCONS_00007059-exon-sc0000073-1575043694:63967..64132Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1575043694:63333..63503TCONS_00007059-exon-sc0000073-1575043694:63333..63503Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1575043694:61583..61740TCONS_00007059-exon-sc0000073-1575043694:61583..61740Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1575043694:61407..61470TCONS_00007059-exon-sc0000073-1575043694:61407..61470Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1575043694:61117..61247TCONS_00007059-exon-sc0000073-1575043694:61117..61247Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1510915933:66811..67113TCONS_00007059-exon-sc0000073-1510915933:66811..67113Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1510915933:63967..64132TCONS_00007059-exon-sc0000073-1510915933:63967..64132Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1510915933:63333..63503TCONS_00007059-exon-sc0000073-1510915933:63333..63503Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1510915933:61583..61740TCONS_00007059-exon-sc0000073-1510915933:61583..61740Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1510915933:61407..61470TCONS_00007059-exon-sc0000073-1510915933:61407..61470Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1510915933:61117..61247TCONS_00007059-exon-sc0000073-1510915933:61117..61247Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1491911889:66811..67113TCONS_00007059-exon-sc0000073-1491911889:66811..67113Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1491911889:63967..64132TCONS_00007059-exon-sc0000073-1491911889:63967..64132Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1491911889:63333..63503TCONS_00007059-exon-sc0000073-1491911889:63333..63503Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1491911889:61583..61740TCONS_00007059-exon-sc0000073-1491911889:61583..61740Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1491911889:61407..61470TCONS_00007059-exon-sc0000073-1491911889:61407..61470Clytia hemisphaericaexon
TCONS_00007059-exon-sc0000073-1491911889:61117..61247TCONS_00007059-exon-sc0000073-1491911889:61117..61247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:61117..67113 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.0453	16.4929	8.47411	7.19343	9.27957	14.8216	8.59072	8.46522	5.07517	5.84037	7.43786	5.58993	8.25289	10.1815	6.54192	8.12753	5.42073	6.5895	5.56369	4.83843	6.44171	5.37159	12.139	10.9145	13.4758	14.6227	3.12191	3.0617	9.31143	11.2208
Blast
[Close]
BLAST of TCONS_00007059 vs. Swiss-Prot (Human)
Match: NELFA (Negative elongation factor A OS=Homo sapiens GN=NELFA PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.084e-28
Identity = 73/212 (34.43%), Postives = 119/212 (56.13%), Query Frame = 1 
Query:  103 HADTALWLHNKLRSDESPWSSGNIASQFTNNILNDIYDCFMQXXXXXXXXXXXXXXXXXXRNMEGLKDSICRIVAIAEEDMDEWVRVAANIVRDYPQQFVLDQRLGKVTTHFQETVHEVVSEIERIQNPVNASLIPGECLYLNRTALSKIISNPPNPSKHFTLRRKPKSAELRAKITQKASEAANQRRXXXXXXXXXXXXLKRTHSVPMGGK 738
             +DT LWLHNKL + +  W+  +IAS  T  ++++I  CF  L S  K+K+LL  L +P R ++ +K ++  I+ +A  D D WV + A+I++ +P    L+  L +   + Q+ + E+  ++   +    ++++P EC YLN+ AL+ +      P KHF L+RKPKSA LRA++ QK++E A Q              LKR+  VP   K
Sbjct:    6 ESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEMKGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPNVQDILGELREKVGECEA---SAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQ--------------LKRSAGVPFHAK 200
The following BLAST results are available for this feature:
BLAST of TCONS_00007059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NELFA1.084e-2834.43Negative elongation factor A OS=Homo sapiens GN=NE... [more]
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