TCONS_00007054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007054
Unique NameTCONS_00007054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007054 ID=TCONS_00007054|Name=TCONS_00007054|organism=Clytia hemisphaerica|type=transcript|length=1409bp
ggacgagatggagtttttacaagctcttatttgatttggttggtcgttaa
ccaNACAACAATAATAAACAACACTTGTCGGATGTCGGCGATCAACGACG
TCGCAACTCGTCCTCTTCCTCAGCATCCAACCTTCTTACGTCACCACCAC
CTCCCATTGCCGAGCAACACAATCAATACAACATGTCGGCgcaacagcaa
caacaaaacTCACAGTCTGCACAACAACAACAAGCGCCCCAACAAAAGCT
TTCACACGATGTCAATCTTAACACATCGCTATCAACAAGTACTTTTCAGC
AAGAACTACAGATGCGCGTTCAACATGAGAAAGAGATGCGACTGAAACAt
gaacaaaaacaacaacaacaacaaaagatgCAACATCAGCAACAAGCTGC
CCGACAACAAACACAACTTCCTAAACAACAGAACACTTCTATtcaacaac
aacagcagcagCAGCAGGTGTTACAACAACATCAAATGCAACAACAAAAC
GAACAACGCCATCAACACCACCCTCAACAAAACATCCCGCCCTCTCAACA
AAACATTCCACCGTCTCAACAAAATATTCCACCGTCTCAACAAAATATTC
CACCGTCTCAACAACAATCAATGCATGATCAACATCCGTTCCAAGACTAC
CAACGACAGCAACAACTTCAAGTGCAACAATCTCATCAcgctcaacaaca
acaaatgtacaaccaacattttcttcaacaacagcaacaactcAGACAAC
AGCAACACTTACAACAAAGACAATACAACACGACCAACATGTCGCAACAA
CAAATGGGTGCTCATGCTCAGCAACAGTCGCAACAAATGCCTCTTTCTCA
TCAACAAATACCGATGGGAAGTGCTCCGTCTAACGTGCTCCCTCTAACGT
TCAAGGGATGCAACCTAATCAACCGAACTCCATGAATCCCAACCAACAGA
AGAAAGGACTTTCTCTCACGCGTGAACAAATGTTAGCAGCGCAAGAGATG
TTTCGATCAGCGAATACCGTGACACGCGCGGAAAAAGCTCTCATACTTGG
CTTCATGGCTGGTGCTAGAGAGAATCCATTTCCACAACAAGGTGCAGTGA
TTACCATCAAGTTGAGTGAAGAAATGATCCCTCAAGGAGAACAACAAGTT
TTGGTTGAAATGTTATTTGAAATGAACTATGATACCGGTCATTGGCGCAG
GTTGAAACGAACTCGTGTTATTCAACAAAACACTCCAAATTGAGAGTGCA
ATTGATATTTGTAAATAATTCTTTCTTGATAATGGAGAAAAACAGAAACG
TTGCTCTAAGATATATAACTTTTCGTATAACTTTTCCACGAATTATTCCA
GTGAGATGTTTATCAGGGGGATTAGGGTCAGAATTTTCCGGAAAAATAAA
TAACTCGGC
Run BLAST on NCBI

transcript from alignment at sc0000073:54191..60344-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007054 ID=TCONS_00007054|Name=TCONS_00007054|organism=Clytia hemisphaerica|type=transcript|length=6154bp|location=Sequence derived from alignment at sc0000073:54191..60344- (Clytia hemisphaerica)
GGACGAGATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTAA
CCANACAACAATAATAAACAACACTTGTCGGATGTCGGCGATCAACGACG
TCGCAACTCGTCCTCTTCCTCAGCATCCAACCTTCTTACGTCACCACCAC
CTCCCATTGCCGAGCAACACAATCAATACAACATGTCGGCGCAACAGCAA
CAACAAAACTCACAGTCTGCACAACAACAACAAGCGCCCCAACAAAAGCT
TTCACACGATGTCAATCTTAACACATCGCTATCAACAAGTACTTTTCAGC
AAGAACTACAGGTCAGCTTTCTATTGAAGATCATCACCATCATCTCAACT
ACAATCAGCGTCATAAAATTTGATACAAAGGGGGAACTCCCTCAAAATTT
TAAAACCGCAAGTGATTTAAATAAATTACGGTTGGAAAGCAGACTTTTAA
CTCTTACAGCCTGAGGATCTCAGGATTCAAAAGCTCAAAATTTTTCCAAT
TAGGCTGGGAGTAAAGCCTAGAAGTCACAAAATCCCTCCAAAATCGAAAT
ATTCAATGTAATAAAGTGGAAGTACTTAAAACACAATTCTCAACCGACGT
TTAAATACTGAAAAACGTTAAAATACACAAAAATCTCAATATATTCGACA
CCGATTGTGAGGGTCATGCTTTTTTGATTTCTTTTGTACCTCTTTTCTCA
TGACTTTATGAAGGTTTATTTTCTCTAGAATAACAAGACTTTTCTATAAA
GTAAAGTTGTTAAACAGCATTGTATTGAAAGTTTGGCATTGAATTCGTTT
AGCTGACTTTCATTTTTTTTTCTTTTTCGCCAACTCAGATGCGCGTTCAA
CATGAGAAAGAGATGCGACTGAAACATGAACAAAAACAACAACAACAACA
AAAGATGCAACATCAGCAACAAGCTGCCCGACAACAAACACAACTTCCTA
AACAACAGAACACTTCTATTCAACAACAACAGCAGCAGCAGCAGGTGTTA
CAACAACATCAAATGCAACAACAAAACGAACAACGCCATCAACACCACCC
TCAACAAAACATCCCGCCCTCTCAACAAAACATTCCACCGTCTCAACAAA
ATATTCCACCGTCTCAACAACAATCAATGCATGATCAACATCCGTTCCAA
GACTACCAACGACAGCAACAACTTCAAGTGCAACAATCTCATCACGCTCA
ACAACAACAAATGTACAACCAACATTTTCTTCAACAACAGCAACAACTCA
GACAACAGCAACACTTACAACAAAGACAATACAACACGACCAACATGTCG
CAACAACAAATGGGTGCTCATGCTCAGCAACAGTCGCAACAAATGCCTCT
TTCTCATCAACAAATACCGATGGGAAGTGCTCCGTCTAACATTCCAGGGC
CGATGGGAAGTGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCAGCAGCAGG
TGTTACAACAACATCAAATGCAACAACAAAACGAACAACGCCATCAACAC
CACCCTCAACAAAACATCCCGCCCTCTCAACAAAACATTCCACCGTCTCA
ACAAAATATTCCACCGTCTCAACAACAATCAATGCATGATCAACATCCGT
TCCAAGACTACCAACGACAGCAACAACTTCAAGTGCAACAATCTCATCAC
GCTCAACAACAACAAATGTACAACCAACATTTTCTTCAACAACAGCAACA
ACTCAGACAACAGCAACACTTACAACAAAGACAATACAACACGACCAACA
TGTCGCAACAACAAATGGGTGCTCATGCTCAGCAACAGTCGCAACAAATG
CCTCTTTCTCATCAACAAATACCGATGGGAAGTGCTCCGTCTAACATTCC
AGGGCCGATGGGAAGTGCTCCGTCTAACATTCCAGGGCCGATGGGAAGTG
CTCCGTCTAACGTTCCAGGGCCGATGGGAAGTGCTCCGTCTAACGTTCCA
GGGCCGATGGGAAGTGCTCCGTCTAACGTTCCAGGGCCGATGGGAGGTGC
TCCCTCTAACGTTCAAGGGATGCAACCTAATCAACCGAACTCCATGAATC
CCAACCAACAGAAGAAAGGACTTTCTCTCACGGTAATCTTTATTCGCAAA
GTTTAGCCTTTCTTTACATATTTACTACTTGTTAGGCTCAACCAAGACCA
CGTCACTCTCGGACTAATAGGGACACTTTCTATTCAACAGCCATTCCAGA
ACAATCCAAGAATGCAGTCACTTCTACTTTGGACAACGTTCTTAGTCACC
AATAGTTTCTGCTGAAATAGCAATTAGACACTTATTCTATCGCGACTTCG
GAAATGTCAGTGTCATTTATGTCAGACACAGTAGCTAGTACCTTGACCAC
CAACCGAGTTTTATCCAAACTGTCCAACTCCAATAGGATATCAGTGGTGC
TTGTTGGCGCATGCCTACATTCGCATCAGCCTGCACACATTAAATTCAGC
CTCATCTGGTTAATCTAATGTAGGATCAGACAATTTCCATCTACTCTTTT
ACAGCGTGAACAAATGTTAGCAGCGCAAGAGATGTTTCGATCAGCGAATA
CCGTGACACGCGCGGAAAAAGCTCTCATACTTGGCTTCATGGCTGGTGCT
AGAGGTAAGGCAAACCTTTTGCTCTCACATCCTTCCTTTTTTTGGGATTT
TTATTTCGCAAACTTATTCTAAATCCAGATAAAGTCTGTTCCAAAAAGTT
CCAAAAATATTGGCAGTCCGCACATTTCCATAGGAAAAAAAATCGAAATT
TGGAGAGTTTGGAAGATAATTTTGAGTGGATGGTTTTAAGGGTTTAAAAG
TTTTAAGAAGAATAAACCAGCCGAGGCTGGAAGGTCAGCCAATAGAGCTT
AGCTAGATAGCTTTAATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNAAAAATGAAGATTTTTTCTACTGAACCAATATTCTTAA
ATTTTACACTTTTCTGAATCTTCGCTGTATTCAGAAGGTGCAGTGAAAGT
CGCGAAAGTTTTTCCCCCTAATGTATTTTCAATCATCAAAGTTAAAATTC
AGGTAAGTTTAAGTCCGGCATATATTCTTTCAAGTAGAAAAATCCTCATT
CTTTTCTTCTTTTTCGAAAAAATAATCCACTCAAAATTACTCTACCATTT
TCCCTTCATCAACAGTAATGTGTAAAGTGTCAACCGGACATTCAATGTTT
CTGAAACAAGACCTTATTCTCTTCCCTTATTTTTCTGACAAATTAAGATA
TGTTTTCTTCATAAAAGGGTGGATTCAAAGAAGTTACTTTTTATGATCAG
AGCCATACAACAGGAGTATATGAAATGATCAACCGGATTTCTTTCTTTCT
TTTTCTGTACACCAGAGAATCCATTTCCACAACAAGGTGCAGTGATTACC
ATCAAGTTGAGTGAAGAAATGATCCCTCAAGGAGAACAACAAGTTTTGGT
TGAAATGTTATTTGAAATGAACTATGATACCGGTCATTGGCGCAGGTTGA
AACGAACTCGTGTTATTCAACAAAACACTCCAAATTGAGAGTGCAATTGA
TATTTGTAAATAATTCTTTCTTGATAATGGAGAAAAACAGAAACGTTGCT
CTAAGATATATAACTTTTCGTATAACTTTTCCACGAATTATTCCAGTGAG
ATGTTTATCAGGGGGATTAGGGTCAGAATTTTCCGGAAAAATAAATAACT
CGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003946XLOC_003946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007054-exon-sc0000073-1575043694:60034..60344TCONS_00007054-exon-sc0000073-1575043694:60034..60344Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1575043694:59243..59506TCONS_00007054-exon-sc0000073-1575043694:59243..59506Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1575043694:57900..58208TCONS_00007054-exon-sc0000073-1575043694:57900..58208Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1575043694:57663..57748TCONS_00007054-exon-sc0000073-1575043694:57663..57748Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1575043694:57141..57240TCONS_00007054-exon-sc0000073-1575043694:57141..57240Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1575043694:54191..54529TCONS_00007054-exon-sc0000073-1575043694:54191..54529Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1510915933:60034..60344TCONS_00007054-exon-sc0000073-1510915933:60034..60344Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1510915933:59243..59506TCONS_00007054-exon-sc0000073-1510915933:59243..59506Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1510915933:57900..58208TCONS_00007054-exon-sc0000073-1510915933:57900..58208Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1510915933:57663..57748TCONS_00007054-exon-sc0000073-1510915933:57663..57748Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1510915933:57141..57240TCONS_00007054-exon-sc0000073-1510915933:57141..57240Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1510915933:54191..54529TCONS_00007054-exon-sc0000073-1510915933:54191..54529Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1491911889:60034..60344TCONS_00007054-exon-sc0000073-1491911889:60034..60344Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1491911889:59243..59506TCONS_00007054-exon-sc0000073-1491911889:59243..59506Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1491911889:57900..58208TCONS_00007054-exon-sc0000073-1491911889:57900..58208Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1491911889:57663..57748TCONS_00007054-exon-sc0000073-1491911889:57663..57748Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1491911889:57141..57240TCONS_00007054-exon-sc0000073-1491911889:57141..57240Clytia hemisphaericaexon
TCONS_00007054-exon-sc0000073-1491911889:54191..54529TCONS_00007054-exon-sc0000073-1491911889:54191..54529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:54191..60344 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.348	3.73493	0	1.70807	0	0	0	0	0	0	0	0	0	1.05602e-08	0	0	0	0	0	0	0	0.201159	0	0	0	0
Blast
[Close]
BLAST of TCONS_00007054 vs. Swiss-Prot (Human)
Match: NELFA (Negative elongation factor A OS=Homo sapiens GN=NELFA PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.203e-28
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 2 
Query:  950 KKGLSLTREQMLAAQEMFRSANTVTRAEKALILGFMAGARENPFPQQGAVITIKLSE--EMIP----QGEQQVLVEMLFEMNYDTGHWRRLKR 1210
            KK LSLTREQM AAQEMF++AN VTR EKALILGFMAG+RENP  +QG VI IKLSE  E +P    QG   +LV+ +FEMNY TG W R K+
Sbjct:  428 KKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKK 520
The following BLAST results are available for this feature:
BLAST of TCONS_00007054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NELFA1.203e-2865.59Negative elongation factor A OS=Homo sapiens GN=NE... [more]
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