TCONS_00007050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007050
Unique NameTCONS_00007050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007050 ID=TCONS_00007050|Name=TCONS_00007050|organism=Clytia hemisphaerica|type=transcript|length=1326bp
AACACTTGTCGGATGTCGGCGATCAACGACGTCGCAACTCGTCCTCTTCC
TCAGCATCCAACCTTCTTACGTCACCACCACCTCCCATTGCCGAGCAACA
CAATCAATACAACATGTCGGCgcaacagcaacaacaaaacTCACAGTCTG
CACAACAACAACAAGCGCCCCAACAAAAGCTTTCACACGATGTCAATCTT
AACACATCGCTATCAACAAGTACTTTTCAGCAAGAACTACAGATGCGCGT
TCAACATGAGAAAGAGATGCGACTGAAACAtgaacaaaaacaacaacaac
aacaaaagatgCAACATCAGCAACAAGCTGCCCGACAACAAACACAACTT
CCTAAACAACAGAACACTTCTATtcaacaacaacagcagcagCAGCAGGT
GTTACAACAACATCAAATGCAACAACAAAACGAACAACGCCATCAACACC
ACCCTCAACAAAACATCCCGCCCTCTCAACAAAACATTCCACCGTCTCAA
CAAAATATTCCACCGTCTCAACAAAATATTCCACCGTCTCAACAACAATC
AATGCATGATCAACATCCGTTCCAAGACTACCAACGACAGCAACAACTTC
AAGTGCAACAATCTCATCAcgctcaacaacaacaaatgtacaaccaacat
tttcttcaacaacagcaacaactcAGACAACAGCAACACTTACAACAAAG
ACAATACAACACGACCAACATGTCGCAACAACAAATGGGTGCTCATGCTC
AGCAACAGTCGCAACAAATGCCTCTTTCTCATCAACAAATACCGATGGGA
AGTGCTCCCTCTAACGTTCAAGGGATGCAACCTAATCAACCGAACTCCAT
GAATCCCAACCAACAGAAGAAAGGACTTTCTCTCACGCGTGAACAAATGT
TAGCAGCGCAAGAGATGTTTCGATCAGCGAATACCGTGACACGCGCGGAA
AAAGCTCTCATACTTGGCTTCATGGCTGGTGCTAGAGAGAATCCATTTCC
ACAACAAGGTGCAGTGATTACCATCAAGTTGAGTGAAGAAATGATCCCTC
AAGGAGAACAACAAGTTTTGGTTGAAATGTTATTTGAAATGAACTATGAT
ACCGGTCATTGGCGCAGGTTGAAACGAACTCGTGTTATTCAACAAAACAC
TCCAAATTGAGAGTGCAATTGATATTTGTAAATAATTCTTTCTTGATAAT
GGAGAAAAACAGAAACGTTGCTCTAAGATATATAACTTTTCGTATAACTT
TTCCACGAATTATTCCAGTGAGATGTTTATCAGGGGGATTAGGGTCAGAA
TTTTCCGGAAAAATAAATAACTCGGC
Run BLAST on NCBI

transcript from alignment at sc0000073:54191..60275-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007050 ID=TCONS_00007050|Name=TCONS_00007050|organism=Clytia hemisphaerica|type=transcript|length=6085bp|location=Sequence derived from alignment at sc0000073:54191..60275- (Clytia hemisphaerica)
AACACTTGTCGGATGTCGGCGATCAACGACGTCGCAACTCGTCCTCTTCC
TCAGCATCCAACCTTCTTACGTCACCACCACCTCCCATTGCCGAGCAACA
CAATCAATACAACATGTCGGCGCAACAGCAACAACAAAACTCACAGTCTG
CACAACAACAACAAGCGCCCCAACAAAAGCTTTCACACGATGTCAATCTT
AACACATCGCTATCAACAAGTACTTTTCAGCAAGAACTACAGGTCAGCTT
TCTATTGAAGATCATCACCATCATCTCAACTACAATCAGCGTCATAAAAT
TTGATACAAAGGGGGAACTCCCTCAAAATTTTAAAACCGCAAGTGATTTA
AATAAATTACGGTTGGAAAGCAGACTTTTAACTCTTACAGCCTGAGGATC
TCAGGATTCAAAAGCTCAAAATTTTTCCAATTAGGCTGGGAGTAAAGCCT
AGAAGTCACAAAATCCCTCCAAAATCGAAATATTCAATGTAATAAAGTGG
AAGTACTTAAAACACAATTCTCAACCGACGTTTAAATACTGAAAAACGTT
AAAATACACAAAAATCTCAATATATTCGACACCGATTGTGAGGGTCATGC
TTTTTTGATTTCTTTTGTACCTCTTTTCTCATGACTTTATGAAGGTTTAT
TTTCTCTAGAATAACAAGACTTTTCTATAAAGTAAAGTTGTTAAACAGCA
TTGTATTGAAAGTTTGGCATTGAATTCGTTTAGCTGACTTTCATTTTTTT
TTCTTTTTCGCCAACTCAGATGCGCGTTCAACATGAGAAAGAGATGCGAC
TGAAACATGAACAAAAACAACAACAACAACAAAAGATGCAACATCAGCAA
CAAGCTGCCCGACAACAAACACAACTTCCTAAACAACAGAACACTTCTAT
TCAACAACAACAGCAGCAGCAGCAGGTGTTACAACAACATCAAATGCAAC
AACAAAACGAACAACGCCATCAACACCACCCTCAACAAAACATCCCGCCC
TCTCAACAAAACATTCCACCGTCTCAACAAAATATTCCACCGTCTCAACA
ACAATCAATGCATGATCAACATCCGTTCCAAGACTACCAACGACAGCAAC
AACTTCAAGTGCAACAATCTCATCACGCTCAACAACAACAAATGTACAAC
CAACATTTTCTTCAACAACAGCAACAACTCAGACAACAGCAACACTTACA
ACAAAGACAATACAACACGACCAACATGTCGCAACAACAAATGGGTGCTC
ATGCTCAGCAACAGTCGCAACAAATGCCTCTTTCTCATCAACAAATACCG
ATGGGAAGTGCTCCGTCTAACATTCCAGGGCCGATGGGAAGTGCTCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCAGCAGCAGCAGGTGTTACAACAACATCAAAT
GCAACAACAAAACGAACAACGCCATCAACACCACCCTCAACAAAACATCC
CGCCCTCTCAACAAAACATTCCACCGTCTCAACAAAATATTCCACCGTCT
CAACAACAATCAATGCATGATCAACATCCGTTCCAAGACTACCAACGACA
GCAACAACTTCAAGTGCAACAATCTCATCACGCTCAACAACAACAAATGT
ACAACCAACATTTTCTTCAACAACAGCAACAACTCAGACAACAGCAACAC
TTACAACAAAGACAATACAACACGACCAACATGTCGCAACAACAAATGGG
TGCTCATGCTCAGCAACAGTCGCAACAAATGCCTCTTTCTCATCAACAAA
TACCGATGGGAAGTGCTCCGTCTAACATTCCAGGGCCGATGGGAAGTGCT
CCGTCTAACATTCCAGGGCCGATGGGAAGTGCTCCGTCTAACGTTCCAGG
GCCGATGGGAAGTGCTCCGTCTAACGTTCCAGGGCCGATGGGAAGTGCTC
CGTCTAACGTTCCAGGGCCGATGGGAGGTGCTCCCTCTAACGTTCAAGGG
ATGCAACCTAATCAACCGAACTCCATGAATCCCAACCAACAGAAGAAAGG
ACTTTCTCTCACGGTAATCTTTATTCGCAAAGTTTAGCCTTTCTTTACAT
ATTTACTACTTGTTAGGCTCAACCAAGACCACGTCACTCTCGGACTAATA
GGGACACTTTCTATTCAACAGCCATTCCAGAACAATCCAAGAATGCAGTC
ACTTCTACTTTGGACAACGTTCTTAGTCACCAATAGTTTCTGCTGAAATA
GCAATTAGACACTTATTCTATCGCGACTTCGGAAATGTCAGTGTCATTTA
TGTCAGACACAGTAGCTAGTACCTTGACCACCAACCGAGTTTTATCCAAA
CTGTCCAACTCCAATAGGATATCAGTGGTGCTTGTTGGCGCATGCCTACA
TTCGCATCAGCCTGCACACATTAAATTCAGCCTCATCTGGTTAATCTAAT
GTAGGATCAGACAATTTCCATCTACTCTTTTACAGCGTGAACAAATGTTA
GCAGCGCAAGAGATGTTTCGATCAGCGAATACCGTGACACGCGCGGAAAA
AGCTCTCATACTTGGCTTCATGGCTGGTGCTAGAGGTAAGGCAAACCTTT
TGCTCTCACATCCTTCCTTTTTTTGGGATTTTTATTTCGCAAACTTATTC
TAAATCCAGATAAAGTCTGTTCCAAAAAGTTCCAAAAATATTGGCAGTCC
GCACATTTCCATAGGAAAAAAAATCGAAATTTGGAGAGTTTGGAAGATAA
TTTTGAGTGGATGGTTTTAAGGGTTTAAAAGTTTTAAGAAGAATAAACCA
GCCGAGGCTGGAAGGTCAGCCAATAGAGCTTAGCTAGATAGCTTTAATAA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATG
AAGATTTTTTCTACTGAACCAATATTCTTAAATTTTACACTTTTCTGAAT
CTTCGCTGTATTCAGAAGGTGCAGTGAAAGTCGCGAAAGTTTTTCCCCCT
AATGTATTTTCAATCATCAAAGTTAAAATTCAGGTAAGTTTAAGTCCGGC
ATATATTCTTTCAAGTAGAAAAATCCTCATTCTTTTCTTCTTTTTCGAAA
AAATAATCCACTCAAAATTACTCTACCATTTTCCCTTCATCAACAGTAAT
GTGTAAAGTGTCAACCGGACATTCAATGTTTCTGAAACAAGACCTTATTC
TCTTCCCTTATTTTTCTGACAAATTAAGATATGTTTTCTTCATAAAAGGG
TGGATTCAAAGAAGTTACTTTTTATGATCAGAGCCATACAACAGGAGTAT
ATGAAATGATCAACCGGATTTCTTTCTTTCTTTTTCTGTACACCAGAGAA
TCCATTTCCACAACAAGGTGCAGTGATTACCATCAAGTTGAGTGAAGAAA
TGATCCCTCAAGGAGAACAACAAGTTTTGGTTGAAATGTTATTTGAAATG
AACTATGATACCGGTCATTGGCGCAGGTTGAAACGAACTCGTGTTATTCA
ACAAAACACTCCAAATTGAGAGTGCAATTGATATTTGTAAATAATTCTTT
CTTGATAATGGAGAAAAACAGAAACGTTGCTCTAAGATATATAACTTTTC
GTATAACTTTTCCACGAATTATTCCAGTGAGATGTTTATCAGGGGGATTA
GGGTCAGAATTTTCCGGAAAAATAAATAACTCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003946XLOC_003946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007050-exon-sc0000073-1575043694:60034..60275TCONS_00007050-exon-sc0000073-1575043694:60034..60275Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1575043694:59243..59506TCONS_00007050-exon-sc0000073-1575043694:59243..59506Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1575043694:57914..58208TCONS_00007050-exon-sc0000073-1575043694:57914..58208Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1575043694:57663..57748TCONS_00007050-exon-sc0000073-1575043694:57663..57748Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1575043694:57141..57240TCONS_00007050-exon-sc0000073-1575043694:57141..57240Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1575043694:54191..54529TCONS_00007050-exon-sc0000073-1575043694:54191..54529Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1510915933:60034..60275TCONS_00007050-exon-sc0000073-1510915933:60034..60275Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1510915933:59243..59506TCONS_00007050-exon-sc0000073-1510915933:59243..59506Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1510915933:57914..58208TCONS_00007050-exon-sc0000073-1510915933:57914..58208Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1510915933:57663..57748TCONS_00007050-exon-sc0000073-1510915933:57663..57748Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1510915933:57141..57240TCONS_00007050-exon-sc0000073-1510915933:57141..57240Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1510915933:54191..54529TCONS_00007050-exon-sc0000073-1510915933:54191..54529Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1491911889:60034..60275TCONS_00007050-exon-sc0000073-1491911889:60034..60275Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1491911889:59243..59506TCONS_00007050-exon-sc0000073-1491911889:59243..59506Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1491911889:57914..58208TCONS_00007050-exon-sc0000073-1491911889:57914..58208Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1491911889:57663..57748TCONS_00007050-exon-sc0000073-1491911889:57663..57748Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1491911889:57141..57240TCONS_00007050-exon-sc0000073-1491911889:57141..57240Clytia hemisphaericaexon
TCONS_00007050-exon-sc0000073-1491911889:54191..54529TCONS_00007050-exon-sc0000073-1491911889:54191..54529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:54191..60275 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.310363	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00007050 vs. Swiss-Prot (Human)
Match: NELFA (Negative elongation factor A OS=Homo sapiens GN=NELFA PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 8.060e-29
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:  867 KKGLSLTREQMLAAQEMFRSANTVTRAEKALILGFMAGARENPFPQQGAVITIKLSE--EMIP----QGEQQVLVEMLFEMNYDTGHWRRLKRTR 1133
            KK LSLTREQM AAQEMF++AN VTR EKALILGFMAG+RENP  +QG VI IKLSE  E +P    QG   +LV+ +FEMNY TG W R K+ +
Sbjct:  428 KKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYK 522
The following BLAST results are available for this feature:
BLAST of TCONS_00007050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NELFA8.060e-2964.21Negative elongation factor A OS=Homo sapiens GN=NE... [more]
back to top