TCONS_00007047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007047
Unique NameTCONS_00007047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007047 ID=TCONS_00007047|Name=TCONS_00007047|organism=Clytia hemisphaerica|type=transcript|length=1511bp
ggacgaacgaacggacgggcatgggttaatttatagaacctccaccgggg
tacccggaggtaggtccaaaaagtattaCCGAGACTAAAAAATGGCAAAG
CATTGAATAAATGTACCAGTGGAGTTTCTCAATTACTCGCAGAACTCCAA
TGTTTACTGAAATCCGAGAGAACAAAACTATACCACCTCTATGGACAAGC
TCAAAATTGGACACATTCATCGAGTACATGCTGCTAAAAGAAAAGCATCT
TATTCAAAAGTCTATCGTGGTCTGTAAGAAGGCCCAATACTTCGCAAGAT
TCATGTTGTGTTCGAAGTCATTGTGAACAGAATCAAACCATGTTATGACC
AAACTATCTTAGATCAACAGCAAGGTTTCATATCGTGAAGAGGAACACCT
GACGATCTTCATTAGAAATATCTAGCTCAATGAAAAAACCCGTATATATT
TCTTGACCTAAGCTTAGCGTTCGATCACATAATAGAGAACGGGTAGTTTA
aagaaaattcagttttttttatacTAAAGGCTATATTAATGTTCACGCGA
TGACCGCGTTAGCAGAAACACCAACTGACACAACTGATAGTTTCTTTATG
GCTACTGGGTTCGATAATCTCCGCCGCTGTATAATCTTTTCATGGACTAT
GTGATGAGAGTATTCAACAATATTTGCTCCGAGGAAGACGCAAATTTCCT
GAAATTATATTTCAGAATAAAAGTACCCGAGGGGAAAAAATACAAGGCTA
CCAGGGAGCGCGTGACGCTGACTGGTTGGACTACACCGACGATCTAAAAC
TATTCTTCATAAAACTACAAAATCGCAAGATATCCAAATTTCATCTCCAT
CCCATTTTTGTCCGGATAGTAATGCAATCTATCTGATTACATAAGTCCAA
TCAAGAGAAGAGCTGTTTCATACAAATCAAAAGGTACTAAGTAACAGATt
agaatttagattttttggtGACAGAATTAACTGACCAAGATTGAGCTTTA
AATTCACGCAGGTCTGTAAATATTGACAGATGATCTTTTTAGCAGAAAGC
TCAAGCTCGTGAAGTGAAAAATTCCCCAGGGTGCAATAAAAACTTAAACA
TTCTAAAAATCTAgaaatacaaaatcttacaaaaaaaacagctgtaaaaa
atgattttattcaAGCGAGAGCAGAGGGCAAGCGTGATATCGTAAAAGAA
GATTTCCTTCTTCAGAAACTCAACCAAGAAGCTATATAATTCGATTTCAT
TTAAATGCTTTATCTTTTCAGCTGTTTCCATGGTGATTACGTCATCGTCA
GAATCGGTTTCATTGATGCTGTCAAGATTCAAAAAAGGAGGTAGCCAGTC
TCAGGTTTTCCATATTTTCAAGGAATTATCATAACAATGActgatttgtt
tttgttttgttttttccatggtgatgacgtcatcatcagaATCGGCGTCA
TTGACGAAGAAGTGACGTTGCCCAGAAGTCGTTGCAATGTATTTCGATGT
AGGATGAATAC
Run BLAST on NCBI

transcript from alignment at sc0000073:720451..722011+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007047 ID=TCONS_00007047|Name=TCONS_00007047|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at sc0000073:720451..722011+ (Clytia hemisphaerica)
ggacgaacgaacggacgggcatgggttaatttatagaacctccaccgggg
tacccggaggtaggtccaaaaagtattaCCGAGACTAAAAAATGGCAAAG
CATTGAATAAATGTACCAGTGGAGTTTCTCAATTACTCGCAGAACTCCAA
TGTTTACTGAAATCCGAGAGAACAAAACTATACCACCTCTATGGACAAGC
TCAAAATTGGACACATTCATCGAGTACATGCTGCTAAAAGAAAAGCATCT
TATTCAAAAGTCTATCGTGGTCTGTAAGAAGGCCCAATACTTCGCAAGAT
TCATGTTGTGTTCGAAGTCATTGTGAACAGAATCAAACCATGTTATGACC
AAACTATCTTAGATCAACAGCAAGGTTTCATATCGTGAAGAGGAACACCT
GACGATCTTCATTAGAAATATCTAGCTCAATGAAAAAACCCGTATATATT
TCTTGACCTAAGCTTAGCGTTCGATCACATAATAGAGAACGGGTAGTTTA
aagaaaattcagttttttttatacTAAAGGCTATAATGTTCACGCGATGA
CCGCNTTCACTGTTTTTCTGATACTAAAGGCTATATTAATGTTCACGCGA
TGACCGCGTTAGCAGAAACACCAACTGACACAACTGATAGTTTCTTTATG
GCTACTGGGTTCGATAATCTCCGCCGCTGTATAATCTTTTCATGGACTAT
GTGATGAGAGTATTCAACAATATTTGCTCCGAGGAAGACGCAAATTTCCT
GAAATTATATTTCAGAATAAAAGTACCCGAGGGGAAAAAATACAAGGCTA
CCAGGGAGCGCGTGACGCTGACTGGTTGGACTACACCGACGATCTAAAAC
TATTCTTCATAAAACTACAAAATCGCAAGATATCCAAATTTCATCTCCAT
CCCATTTTTGTCCGGATAGTAATGCAATCTATCTGATTACATAAGTCCAA
TCAAGAGAAGAGCTGTTTCATACAAATCAAAAGGTACTAAGTAACAGATt
agaatttagattttttggtGACAGAATTAACTGACCAAGATTGAGCTTTA
AATTCACGCAGGTCTGTAAATATTGACAGATGATCTTTTTAGCAGAAAGC
TCAAGCTCGTGAAGTGAAAAATTCCCCAGGGTGCAATAAAAACTTAAACA
TTCTAAAAATCTAgaaatacaaaatcttacaaaaaaaacagctgtaaaaa
atgattttattcaAGCGAGAGCAGAGGGCAAGCGTGATATCGTAAAAGAA
GATTTCCTTCTTCAGAAACTCAACCAAGAAGCTATATAATTCGATTTCAT
TTAAATGCTTTATCTTTTCAGCTGTTTCCATGGTGATTACGTCATCGTCA
GAATCGGTTTCATTGATGCTGTCAAGATTCAAAAAAGGAGGTAGCCAGTC
TCAGGTTTTCCATATTTTCAAGGAATTATCATAACAATGActgatttgtt
tttgttttgttttttccatggtgatgacgtcatcatcagaATCGGCGTCA
TTGACGAAGAAGTGACGTTGCCCAGAAGTCGTTGCAATGTATTTCGATGT
AGGATGAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003943XLOC_003943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007047-exon-sc0000073-1491911889:720451..720979TCONS_00007047-exon-sc0000073-1491911889:720451..720979Clytia hemisphaericaexon
TCONS_00007047-exon-sc0000073-1510915933:720451..720979TCONS_00007047-exon-sc0000073-1510915933:720451..720979Clytia hemisphaericaexon
TCONS_00007047-exon-sc0000073-1575043694:720451..720979TCONS_00007047-exon-sc0000073-1575043694:720451..720979Clytia hemisphaericaexon
TCONS_00007047-exon-sc0000073-1491911889:721030..722011TCONS_00007047-exon-sc0000073-1491911889:721030..722011Clytia hemisphaericaexon
TCONS_00007047-exon-sc0000073-1510915933:721030..722011TCONS_00007047-exon-sc0000073-1510915933:721030..722011Clytia hemisphaericaexon
TCONS_00007047-exon-sc0000073-1575043694:721030..722011TCONS_00007047-exon-sc0000073-1575043694:721030..722011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:720451..722011 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0528581	0	0.0534351	0	0	0	0	0	0	0	0	0	0.0861531	0	0	0	0	0	0.0822859	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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