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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007046 ID=TCONS_00007046|Name=TCONS_00007046|organism=Clytia hemisphaerica|type=transcript|length=3703bp
CCCTCAGCCAgaaaaacactattcttataaaaaacgcatGTATCCTACTA
AGAATGAAAGATGATATTTCATATCGatgttttatttcatttctttagTT
TGAtattaaaaaacaacaagatgACACTCGGagaaacagataaaaatgcT
TTAATTGAAGCAAGTATTTCAGCTAAAGATTTTGCTTATGCAAAATATAG
TAATTTTCGAGTTGGATGTGCGCTTTTATCACAATGTGGTAAAACAATCA
CAGGATGTAATGTTGAGAATGTTAGTTTTGGGTTAACAATATGTGCAGAA
AGAACTGCATATTGCAAGGCTATTAGTGAAGGTATCACAAAATTTAAAGC
TATTGCTATTGCGACAGATGTTAAAAATNTTAGTGAAGGTATCACAAAAT
TTAAAGCTATTGCCATTGCGACAGATGTTAAAAATGGCAGTATGGTTTCT
CCTTGTGGAGCCTGTCGACAATTTATGGCAGAGTTTGGAaatattgatat
aattttggtTAATTTAGATAGAGATACTAAAGAAACAACCTTGTCACACT
TGCTACCTATGTCCTTTGATGAGGATGCACTTCACAATGGACAAGAAAAT
ggaatcaaaaattaaataattctGTTTTGAAATCTGGACAGTTTGCATTG
CACTGTGGatacctttattttcattaaattatcatttttatgaaGATCAG
TTCAGGATATAAAATTGCAGCCTTTCTAATTCAGAGTTATTTGGGTcgac
aaaaaattttaaaattttattacaaTAAGCACTTTTACGTTAGCAAAAGC
TAAATTTTCGTCGGCATTTGCCTTGGCAATAGCCGAATGCTGACGCGAAA
CAGTATGGCTGAGATTGATATAGAACTTTTAATATGATCAGATTTGAGGA
CATTGAGTGATTTTTCATCaagataaatataaaataatagCGTACAGTAT
GAATAAAATATCTGCTCAGTTTGAGGAGGCATAAACTCTTATAATGTTCC
TCTttcaaggctcgaaataacgatttcaagtgggtcggacaaaatgtccg
atcagggttgctttagcttgaaaattatgatttttgggtcggacatgaag
ctatttgggtcggacaatgtccgatgtccgaccgttgtTTAGAGCCCTGA
CTCTTTATGAACTGATAAATTTTTCCAAAGTCTTTGTTTAGAAACATGAT
TCGTTTTTATTTATTAAGTTAGGTTTAAATTATTTGGATAgaattgtctt
ttttatttggctCTTCTTTACATTTTCACTTGAAGAGGTGATAAGTGTTt
tgttgaaatatttatttctaattatttgtttttgttttttattttgcacT
TTATTTAAGTAAACAGTATAGTTTTGTAGTAATTTTTCATATGAAATATG
ATGATTTTGTATAgacaattttttatcattttgataAATCCATCGTTCAG
CTAATTTATAACACCTATTGAATTTATTTCCAATCTTTGTTTAGAAACAT
GATTCGTTTTTATTTATTAAGTTAGGTTTAAATTATTTGGATAgaattgt
cttttttatttggctCTTCTTTACATTTTCACTTGAAGAGGTGATAAGTG
TTttgttgaaatatttatttctaattatttgtttttgttttttattttgc
acTTTATTTAAGTAAACAGTATAGTTTTGTAGTAATTTTTCATATGAAAT
ATGATGATTTTGTATCTTAGCTTTGATCTTTGACTTTTGAGAATTGCTGC
TTATCTAACACCCAAATTTTGACATATATAAGGAGGcccccaagcggttt
tcgtgatgacgtgatagggactttttttgcagcgtgattatgtgatttgg
aaattttttcttcgtgattgcgtgatgagaggtcaaaacTTGATCgttat
ttgaaagatttttgagtatacgtaatttgaactttttcaaagggatgcgt
gattgtccattttttttttttgctgatttgcgtgatcgtgattgaagacc
aaaaaatgcgtgatatcgtgatcagagttaccgctggggggcctctatAA
GGTTAAACAATACAAAGATTAACTGAGAAATAATTACTATTTTTCTCGAG
CTACAAAAATATCTAtaaaattttcaccaatttatagaaaaaatcaaaaa
atatacaatttctaAGAGATTAGGAATCGACTCCAACAAGATATGTACGA
AAAATCGTCAgaatgttttaaatgttttaaactaaaaagaaaatgCATAA
ACTATTTTCTTATGCTTTCtgataatgggctcttccagaaaatgtccgta
catggggggtggaggatatagtgtcctggggtagtgaaaaatctacaaaa
tttgtctTGTCAGAGGGGTAAAAAtgctgtttgagggtaattttgatatt
cggccaactaatgcttgtccgggggggttTAGACCTGCTGTCCAGGGAGT
CAAAATTCACAGTGTCCGGggtgtaaattttcaaaaaatgttatatcctc
caccccccttccatattcaaatttttttctggaaaagcccaatatagCTT
TTATTCCGAATGAGAAGCTAATCTATACCACAAGCCATCTGGGTCAATTA
TGCGAGTAGGTTAATTTATAAGAACGTTAGTATTAGTAATTGATTACTTT
ACTCACCAGCTGGcaacaacgttgttttaacgttcaaataacgttatttg
gatgtTATGAATGTCAATTGgatgttgttttgacgttgtgtgccggctgg
gtcaCCTTCTTATAATAAATATGTTTTGTTCTGACCATCATTTGTACAAA
AGCTACAATATTGTACAAATTGATAATAATGATATGAAGCTCATAgaata
ttccagaaaaaatctgtTAATGGGGTGAAGAATATTATAATATTGTTTTA
ATGATATGCGCCTGAACACTTCAATTTTTAGCCATTCCCCACCATCCCTT
GCCACGTGTTTTGACCCTGGAAATGGCGGTTTTTCACAATCTTTCCATTA
CCCCTGGAGAAAATGTCTTCCACCCCCTATAAACgactttttttctggaa
gagctcgATCATGCTTTAAACAATTTCAATGGTCTGTTCGTTTTTTTTGT
TCCATTCTTTCATATTGAAGAACAGCAAGTACACAAAGATGTTTTATTAT
TTATACCATAATTACGTAATTCCTCCGTTTTCTTTTTAGCCTGCTTTTCC
AATGGAGTAAAGACAAGGTGTGAGGATCCAATAGATGATTAGTGTGGAGA
AAGACATCAAGTAAGTGTCTTTATCACATAAATCGTTCACCACGATAAAT
TCTTCATATGCATTCCATGTTGGCCAATAGCGGAACACCAAATAACTGCC
CCAACACTGGACCCCAAAATGGGCCACAATGAAGAGGCCGAAACAGCCGA
GCCAGAAGTTGGAGCAACTTGAGTCGTCATCACATAACATCACAAAGAAG
AAACTAACGAACGCCACCAATGCTAAAACACCACTGAGCAAACAAAACAA
GGGAACGTTTTCTCGTACAGGACATCCTCCAAGGTGCGTGTATCCTAAAA
CAATAAAGTCACCATTTATGTCACTGGTTAAGACCACAAATATCtcatat
aaaacactagatagagctactctgtatttcccaagtgAAGCAAACTAATG
caccatctttgctgaaagtaggtcacagtaGGCCACAGTTCGGTACCAGC
AAT Run BLAST on NCBI protein sequence of TCONS_00007046-protein >TCONS_00007046-protein ID=TCONS_00007046-protein|Name=TCONS_00007046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MIFHIDVLFHFFSLILKNNKMTLGETDKNALIEASISAKDFAYAKYSNFR
VGCALLSQCGKTITGCNVENVSFGLTICAERTAYCKAISEGITKFKAIAI
ATDVKNXSEGITKFKAIAIATDVKNGSMVSPCGACRQFMAEFGNIDIILV
NLDRDTKETTLSHLLPMSFDEDALHNGQENGIKN Run BLAST on NCBI transcript from alignment at sc0000073:646087..650053+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007046 ID=TCONS_00007046|Name=TCONS_00007046|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at sc0000073:646087..650053+ (Clytia hemisphaerica)
CCCTCAGCCAgaaaaacactattcttataaaaaacgcatGTATCCTACTA
AGAATGAAAGATGATATTTCATATCGatgttttatttcatttctttagTT
TGAtattaaaaaacaacaagatgACACTCGGagaaacagataaaaatgcT
TTAATTGAAGCAAGTATTTCAGCTAAAGATTTTGCTTATGCAAAATATAG
TAATTTTCGAGTTGGATGTGCGCTTTTATCACAATGTGGTAAAACAATCA
CAGGATGTAATGTTGAGAATGTTAGTTTTGGGTTAACAATATGTGCAGAA
AGAACTGCATATTGCAAGGCTATTAGTGAAGGTATCACAAAATTTAAAGC
TATTGCTATTGCGACAGATGTTAAAAATNTTAGTGAAGGTATCACAAAAT
TTAAAGCTATTGCCATTGCGACAGATGTTAAAAATGGCAGTATGGTTTCT
CCTTGTGGAGCCTGTCGACAATTTATGGCAGAGTTTGGAaatattgatat
aattttggtTAATTTAGATAGAGATACTAAAGAAACAACCTTGTCACACT
TGCTACCTATGTCCTTTGATGAGGATGCACTTCACAATGGACAAGAAAAT
ggaatcaaaaattaaataattctGTTTTGAAATCTGGACAGTTTGCATTG
CACTGTGGatacctttattttcattaaattatcatttttatgaaGATCAG
TTCAGGATATAAAATTGCAGCCTTTCTAATTCAGAGTTATTTGGGTcgac
aaaaaattttaaaattttattacaaTAAGCACTTTTACGTTAGCAAAAGC
TAAATTTTCGTCGGCATTTGCCTTGGCAATAGCCGAATGCTGACGCGAAA
CAGTATGGCTGAGATTGATATAGAACTTTTAATATGATCAGATTTGAGGA
CATTGAGTGATTTTTCATCaagataaatataaaataatagCGTACAGTAT
GAATAAAATATCTGCTCAGTTTGAGGAGGCATAAACTCTTATAATGTTCC
TCTttcaaggctcgaaataacgatttcaagtgggtcggacaaaatgtccg
atcagggttgctttagcttgaaaattatgatttttgggtcggacatgaag
ctatttgggtcggacaatgtccgatgtccgaccgttgtTTAGAGCCCTGA
CTCTTTATGAACTGATAAATTTTTCCAAAGTCTTTGTTTAGAAACATGAT
TCGTTTTTATTTATTAAGTTAGGTTTAAATTATTTGGATAgaattgtctt
ttttatttggctCTTCTTTACATTTTCACTTGAAGAGGTGATAAGTGTTt
tgttgaaatatttatttctaattatttgtttttgttttttattttgcacT
TTATTTAAGTAAACAGTATAGTTTTGTAGTAATTTTTCATATGAAATATG
ATGATTTTGTATAgacaattttttatcattttgataAATCCATCGTTCAG
CTAATTTATAACACCTATTGAATTTATTTCCAATCTTTGTTTAGAAACAT
GATTCGTTTTTATTTATTAAGTTAGGTTTAAATTATTTGGATAgaattgt
cttttttatttggctCTTCTTTACATTTTCACTTGAAGAGGTGATAAGTG
TTttgttgaaatatttatttctaattatttgtttttgttttttattttgc
acTTTATTTAAGTAAACAGTATAGTTTTGTAGTAATTTTTCATATGAAAT
ATGATGATTTTGTATCTTAGCTTTGATCTTTGACTTTTGAGAATTGCTGC
TTATCTAACACCCAAATTTTGACATATATAAGGAGGcccccaagcggttt
tcgtgatgacgtgatagggactttttttgcagcgtgattatgtgatttgg
aaattttttcttcgtgattgcgtgatgagaggtcaaaacTTGATCgttat
ttgaaagatttttgagtatacgtaatttgaactttttcaaagggatgcgt
gattgtccattttttttttttgctgatttgcgtgatcgtgattgaagacc
aaaaaatgcgtgatatcgtgatcagagttaccgctggggggcctctatAA
GGTTAAACAATACAAAGATTAACTGAGAAATAATTACTATTTTTCTCGAG
CTACAAAAATATCTAtaaaattttcaccaatttatagaaaaaatcaaaaa
atatacaatttctaAGAGATTAGGAATCGACTCCAACAAGATATGTACGA
AAAATCGTCAgaatgttttaaatgttttaaactaaaaagaaaatgCATAA
ACTATTTTCTTATGCTTTCtgataatgggctcttccagaaaatgtccgta
catggggggtggaggatatagtgtcctggggtagtgaaaaatctacaaaa
tttgtctTGTCAGAGGGGTAAAAAtgctgtttgagggtaattttgctctg
tttgagggtaactTTGATATTCGGCcaactaatgcttgtccgggggggtt
TAGACCTGCTGTCCAGGGAGTCAAAATTCACAGTGTCCGGggtgtaaatt
ttcaaaaaatgttatatcctcaaCCCCNggggggggggggggtggaggat
atagtgtccgggggtagtgaaaaatctacaaaatttgtctTGTCAAAGGG
GTAAACTTGCTGTTTGAGCtggtttgagggtaattttgctctgtttgaag
gtaattttgatattcggccaactaatgcttgtccgggggggttTAGACCT
GCTGTCCAGGGAGTCAAAATTCACAGTGTCCGGggtgtaaattttcaaaa
aatgttatatcctccaccccccttccatattcaaatttttttctggaaaa
gcccaatatagCTTTTATTCCGAATGAGAAGCTAATCTATACCACAAGCC
ATCTGGGTCAATTATGCGAGTAGGTTAATTTATAAGAACGTTAGTATTAG
TAATTGATTACTTTACTCACCAGCTGGcaacaacgttgttttaacgttca
aataacgttatttggatgtTATGAATGTCAATTGgatgttgttttgacgt
tgtgtgccggctgggtcaCCTTCTTATAATAAATATGTTTTGTTCTGACC
ATCATTTGTACAAAAGCTACAATATTGTACAAATTGATAATAATGATATG
AAGCTCATAgaatattccagaaaaaatctgtTAATGGGGTGAAGAATATT
ATAATATTGTTTTAATGATATGCGCCTGAACACTTCAATTTTTAGCCATT
CCCCACCATCCCTTGCCACGTGTTTTGACCCTGGAAATGGCGGTTTTTCA
CAATCTTTCCATTACCCCTGGAGAAAATGTCTTCCACCCCCTATAAACga
ctttttttctggaagagctcgATCATGCTTTAAACAATTTCAATGGTCTG
TTCGTTTTTTTTGTTCCATTCTTTCATATTGAAGAACAGCAAGTACACAA
AGATGTTTTATTATTTATACCATAATTACGTAATTCCTCCGTTTTCTTTT
TAGCCTGCTTTTCCAATGGAGTAAAGACAAGGTGTGAGGATCCAATAGAT
GATTAGTGTGGAGAAAGACATCAAGTAAGTGTCTTTATCACATAAATCGT
TCACCACGATAAATTCTTCATATGCATTCCATGTTGGCCAATAGCGGAAC
ACCAAATAACTGCCCCAACACTGGACCCCAAAATGGGCCACAATGAAGAG
GCCGAAACAGCCGAGCCAGAAGTTGGAGCAACTTGAGTCGTCATCACATA
ACATCACAAAGAAGAAACTAACGAACGCCACCAATGCTAAAACACCACTG
AGCAAACAAAACAAGGGAACGTTTTCTCGTACAGGACATCCTCCAAGGTG
CGTGTATCCTAAAACAATAAAGTCACCATTTATGTCACTGGTTAAGACCA
CAAATATCtcatataaaacactagatagagctactctgtatttcccaagt
gAAGCAAACTAATGcaccatctttgctgaaagtaggtcacagtaGGCCAC
AGTTCGGTACCAGCAAT Coding sequence (CDS) from alignment at sc0000073:646087..650053+ >TCONS_00007046 ID=TCONS_00007046|Name=TCONS_00007046|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000073:646087..650053+ (Clytia hemisphaerica)
ATGATATTTCATATCGatgttttatttcatttctttagTTTGAtattaaa
aaacaacaagatgACACTCGGagaaacagataaaaatgcTTTAATTGAAG
CAAGTATTTCAGCTAAAGATTTTGCTTATGCAAAATATAGTAATTTTCGA
GTTGGATGTGCGCTTTTATCACAATGTGGTAAAACAATCACAGGATGTAA
TGTTGAGAATGTTAGTTTTGGGTTAACAATATGTGCAGAAAGAACTGCAT
ATTGCAAGGCTATTAGTGAAGGTATCACAAAATTTAAAGCTATTGCTATT
GCGACAGATGTTAAAAATNTTAGTGAAGGTATCACAAAATTTAAAGCTAT
TGCCATTGCGACAGATGTTAAAAATGGCAGTATGGTTTCTCCTTGTGGAG
CCTGTCGACAATTTATGGCAGAGTTTGGAaatattgatataattttggtT
AATTTAGATAGAGATACTAAAGAAACAACCTTGTCACACTTGCTACCTAT
GTCCTTTGATGAGGATGCACTTCACAATGGACAAGAAAATggaatcaaaa
attaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007046-exon-sc0000073-1491911889:646087..648472 | TCONS_00007046-exon-sc0000073-1491911889:646087..648472 | Clytia hemisphaerica | exon |
| TCONS_00007046-exon-sc0000073-1510915933:646087..648472 | TCONS_00007046-exon-sc0000073-1510915933:646087..648472 | Clytia hemisphaerica | exon |
| TCONS_00007046-exon-sc0000073-1575043694:646087..648472 | TCONS_00007046-exon-sc0000073-1575043694:646087..648472 | Clytia hemisphaerica | exon |
| TCONS_00007046-exon-sc0000073-1491911889:648737..650053 | TCONS_00007046-exon-sc0000073-1491911889:648737..650053 | Clytia hemisphaerica | exon |
| TCONS_00007046-exon-sc0000073-1510915933:648737..650053 | TCONS_00007046-exon-sc0000073-1510915933:648737..650053 | Clytia hemisphaerica | exon |
| TCONS_00007046-exon-sc0000073-1575043694:648737..650053 | TCONS_00007046-exon-sc0000073-1575043694:648737..650053 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:646087..650053 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009972 | cytidine deamination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004126 | cytidine deaminase activity |
| GO:0008270 | zinc ion binding |
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009972 |
cytidine deamination |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004126 |
cytidine deaminase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00007046 vs. Swiss-Prot (Human)
Match: CDD (Cytidine deaminase OS=Homo sapiens GN=CDA PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 1.937e-27 Identity = 66/163 (40.49%), Postives = 83/163 (50.92%), Query Frame = 1
Query: 109 KNNKMTLGETDKNALIEASISAKDFAYAKYSNFRVGCALLSQCGKTITGCNVENVSFGLTICAERTAYCKAISEGITKFKAIAIATDVKNXSEGITKFKAIAIATDVKNGSMVSPCGACRQFMAEFG-NIDIILVNLDRDTKETTLSHLLPMSFDEDALHNGQ 594
K TL L+ S AK AY YS+F VG ALL+Q G+ GCN+EN + L ICAERTA KA+SEG F+AIAIA+D+++ +SPCGACRQ M EFG N + + D T+ LLP SF + L Q
Sbjct: 4 KRPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASDMQD--------------------DFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSFGPEDLQKTQ 146
The following BLAST results are available for this feature:
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