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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007043 ID=TCONS_00007043|Name=TCONS_00007043|organism=Clytia hemisphaerica|type=transcript|length=1499bp
CTGATATTAGAGTTTCATTGATAGATATTCTCTGTTGAATTTGATTATTT
AATACTTTATATTAACATCTTATCTCATATTCATACTAGAAACTCAAAGG
tgagagaaaaacaaaaaccacGGGGGAACCATTGCTAATTTGCTTTTAGT
TATGTGATGTAACATTAGCCATTCAGcagctttctttttttcttgttaCT
CATTAACCAAGTCAGGCTCCAGTGTTTGGTTCTTTGGGCTTTTCTCTTCA
TGAACAAATAGTTGTATTTCTTTAGTTTATGCGGCATTCAATCAATTTCA
ACCaaagaaatttcaataaaacatTTGTTCAGGGAATCATGGCATCTGtt
gaaaaactaaaaagaaaaagcagTAATTGTGCTGGGGAAACCAAAATAAA
GAAAGCTAAAGTTGATAAGGAAAAACTTCCTAAAAGGAACAAAAGAGGTG
AATTGAAATTCGCTGACCATCCTGATTTCCGTCCGAATCGAACGCCAAAA
GAGATACTACAAGCAGGTGCCTTTGGTGGTGGTTACTTCAGACCAATCAA
ATCTGGCGTCAccaatgaaaaatataaagacTGTTGGAAAGAATTTCCAG
AACACTGGTTTGAAGGAGTGAAACCAAGTTTATCTATTGCGAACTCAACT
TATGATAAATCAAGGAATTTTTATAAAGTCAAATGTGGGGCTTCACTAGA
AGAATGGGAGTCGAGTGGTTGGATTAAAGCTCAAGATCCGTATGGTTGGT
TCCAATGGTATTGTCGTTTCTACTTAGGACGTCGAACGGAAGATGACGAA
CGTCAAATCGGACGATGGCATCGTTTCTTATCTCGATTCAAAACAAACCt
ggtcaataaaatcaaaaaagcagACGCCAGTTATGATAATTATACCATTT
CACCTGTCATAAGACAATCTCTTTTACACTGGGGCTACCAAATAGTTCCG
CAAGATTTAGGAGGCAAACGAAAACCAAGCGAGGAAGAGTCAGAGAAGAA
TGTCCCATTGAAATGATCAAGGTGCACTGATGGGAAACTGAACTTGTATA
AATTTGATGTTGTTTATTGATGGCATATATTTTTCGTGTATGTTCAACTA
CATTACGTTTTAAGAAGAGATTCGGGTCCTGCCGCTGTTCGATCGGACCA
TGCCgttgttcttaaccttttgtaTTAGACCGGCGTAATAAAGTGCTCAA
TGATCGATTCTCCTGCTAGGATATATTAAACAAGCAGGTCGTTcgtattt
tttatttacttttaagaTATTGATGTATAAGATGTCAtatattttgttta
tattttcatgTAAATTTGTCTGCATAACTGTAAAAAAGATTCTATTTTAA
GGCAATCGTCTGTATGTTATATCTGTACATCATCTTGATCTGTTGCATAC
ATACTTTATtgggcgtacaaactttcgcgagcagaaatttTCGCAAGGTC
GAAGTTTTACAGATTCTGTATTTTGCAACGAATTTTTCGCAAACTTTCA Run BLAST on NCBI protein sequence of Putative cnidarian restricted protein >TCONS_00007043-protein ID=TCONS_00007043-protein|Name=Putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MRHSINFNQRNFNKTFVQGIMASVEKLKRKSSNCAGETKIKKAKVDKEKL
PKRNKRGELKFADHPDFRPNRTPKEILQAGAFGGGYFRPIKSGVTNEKYK
DCWKEFPEHWFEGVKPSLSIANSTYDKSRNFYKVKCGASLEEWESSGWIK
AQDPYGWFQWYCRFYLGRRTEDDERQIGRWHRFLSRFKTNLVNKIKKADA
SYDNYTISPVIRQSLLHWGYQIVPQDLGGKRKPSEEESEKNVPLK Run BLAST on NCBI transcript from alignment at sc0000073:486345..491316+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007043 ID=TCONS_00007043|Name=TCONS_00007043|organism=Clytia hemisphaerica|type=transcript|length=4972bp|location=Sequence derived from alignment at sc0000073:486345..491316+ (Clytia hemisphaerica)
CTGATATTAGAGTTTCATTGATAGATATTCTCTGTTGAATTTGATTATTT
AATACTTTATATTAACATCTTATCTCATATTCATACTAGAAACTCAAAGG
tgagagaaaaacaaaaaccacGGGGGAACCATTGCTAATTTGCTTTTAGT
TATGTGATGTAACATTAGCCATTCAGcagctttctttttttcttgttaCT
CATTAACCAAGTCAGGCTCCAGTGTTTGGTTCTTTGGGCTTTTCTCTTCA
TGAACAAATAGTTGTATTTCTTTAGTTTATGCGGCATTCAATCAATTTCA
ACCaaagaaatttcaataaaacatTTGTTCAGGGAATCATGGCATCTGtt
gaaaaactaaaaagaaaaagcagTAATTGTGCTGGGGAAACCAAAATAAA
GAAAGCTAAAGTTGATAAGGAAAAACTTCCTAAAAGGAACAAAAGAGGTA
AAGTATCTTTGATATCTGTCAGTCTGTTTTCTATGCAATTTGTAAAAAac
tgagtcccaggtagggtcgcaaaaacacaaaaatagaaaaatcagtccct
cgtagggtgcctatttttggaaaatttgggaaaaaagtagaaaaatttga
gaaaattttgaaatttcagtcccattcagggtcacttttttcgcaaattt
cgagtcccacgtagggtccatttttcgaacctcagcggagcacccccgtc
ggtggacaagggtagtaccccccccggggatGTCATATTCAGTCAAGGAA
TTCCCTCTCaatattgggctattccatttttaaaccatacaggggtattg
acgaacttttccaggggggtctgagccttgattttccaaggtgtttttgg
tcattttcagattttccaagggggttattaaaggtttccagggggttctc
CCCTCCTAAACTGGCATCAATAGTCACTTTCCAGGCCctctttcacaaaa
ttttattttccagGGGTATCAACtcctaatttccaggggatagtttgcta
tcaaaaatttccaggggggttagtgaaaaaatttcgtcaatacccctgta
caatttttttttggaatagcccattgtGTTAGTTTTTTTACCGTAATTGC
GGTATAACCATcgcttttacatttttcatatgCTAAATTGCTAAAAGAAA
CTGGATTCAAGATTTTTGCGTATAATTTATCATATCTTTATAAACGCgac
agacaaaagatttttccatAGATCAATTCTTTTAATAAAGGCAAGCTTTT
TGCTTGTACTATTTCTAACAGTCGATGGTTGTGGCTCTTTGTCAACCGAC
ACTATACATTATGTACTCATTATAAGCCttttacagtgcagcaaaaaaaa
ggtcaaattcatacCCTTGGAgtgcatttttctcaaattttcaacttttt
agagcaaaaaagaGCAGGATTTAAGGGCAAAAATTAGCAATTCTTCCTGG
ATTTGCTGAAATTCCCACCCTTACAatgtatttttattattttcaaaagc
atACCCTTAGCCACCATGTATACCTGTCAGTCAATTGgatttatctaaag
aatccttcatttattaaaaatagacaaaaagaacgacaaatttcataaat
aaCAAATGTCACCATCCACAACCCCCACCGAAAGTGGCTGTGTGGATTTA
TCTAAGGAATCctgcatttactaaaaatagaccaaaattattaatttttt
tttttttattaatttatttggtaaagcaggtcaggttctatatacaaaac
TGTATACAATTATACACAATTCTGTACATATTGGCAGTAAAAAACTGATT
TGGACctagaacgacaaatttcataaataaCAAATGTCACCATCCACAAC
CCCCACCAAAAGTGGCTGTACCCCTATGTATTCATTCctttttgtttatc
acgggaattaactacatatggtttAAAGAATAACAACTTACGcaacaatg
caggattctttagaggaacagactggtTTGCCTGACTCCTCCCGACTGTT
tgattattattttgttttatccTTATAGTTGTACTAATAATAAGTTTTTC
CAGTGCAAATTTTGTGCCTATAACACAAACCCAGTGATTCCAATTTGAGG
GATCTTGGAGGGGATTTCTAGGGATAGAGGGATCCTGAGAAATGAAAACA
CTCTGGTTAAAAAGAACTGAAAAAGATTcttggaaaaaataattttagtg
tattttctTCGTTAAATGTGACATTTATGCAAAATTTGATCTTTATATGA
TGACTAAGCTTGAATTATGCAAAGAAATGAGTCAAACTTTCCCTAATTTT
TCATACTTCCAGGACCAGATCGCTAATTCGGAGGTACTCTAATTTAACCT
TTCTTTGTTCATTCGTTTGTCCGTCCCTCTGTTTGTTGgtttgtctgtta
ccagcttttcttatGATTGGCCCATGACAGTACCCAAAAAGTGAcggttt
tcaaaaaattttgttgaggttaatttgggccaaaaagtgccttttCTGAT
TGTTNTTGGGTACGTCAAAGTGAcggttttcaaaaaattttgttgaggtt
aatttgggccaaaaagtgccttttCTGATTGTTTGTATAAAGACAGAGAG
GAGGGATCTCTAAGAAGTGGCTGAAGCcttattttttgcaaagttttttt
gaataGGATTtatcttatttggggaaattccatttttgtcatttttaggg
aaaatgaatATTTCTCGCGATTgacttggtatttttttctcattctttGC
ACAGTAATGTAAAATGATATTGCTTAAAATCTGACAGAGtccaattttct
aaaaacaaattttagggcaaatttgggctaaatagagcctaaaaaagttt
atttttttttgattttgtgtgaAATTCCTTCATTAGTCTAAATAACTTTG
AGTTTATCAATCCAGTGATATGAAtaaatttacgtttggctacgtttcaa
GAGATTATTCTCCCATCATTGGGCAATTCATTTCATGGTCATCCACCCAG
CAATGATCAgctatttcttttctatccGTATATCCATTTTGAACAGCTCT
ATTATGTTCTTTGTATCTGACAACGAAAGATCTCTTAGACTCACTCCTTA
GTTTTTCCTGATATTTTACACAGAATAGATTTACCCCGTGAGAATCTGAG
GCAGTGCCAACATTTATCTTATGGTATATAGCTTAGGGCCTTTTTGTGAT
ATATGGAGCAAATAGTGTGTAAAAGTATATTGTTGGAACATAATTATCAT
ATTAGAGTAAtcctctcagaaaataaacaaaatagtaTCAGAACGTGTAA
TTTTATCTAGATAGGCCTATATTGtcataataaataaaattttaattgta
aactttttgttctttttgtagGTGAATTGAAATTCGCTGACCATCCTGAT
TTCCGTCCGAATCGAACGCCAAAAGAGATACTACAAGCAGGTGCCTTTGG
TGGTGGTTACTTCAGACCAATCAAATCTGGCGTCAccaatgaaaaatata
aagacTGTTGGAAAGAATTTCCAGAACACTGGTTTGAAGGAGTGAAACCA
AGTTTATCTATTGCGAACTCAACTTATGATAAATCAAGGAATTTTTATAA
AGTCAAATGTGGGGCTTCACTAGAAGAATGGGAGTCGAGTGGTAAGTTTC
TTTTTTGGTATACACGTTATTTCTCACTAACCttaattgataaatttgtt
ACTCTGAACTGAGAGTACTACCGtggtgcctaataaacggggTGGTCGGA
ATAAACAAGAGGCTGGAAAAATCTTACAAATCTTGATAAGCGGGAGGTTG
GACAACTCTTAATACCTCCAAAATTAGGTAATTATAAACAAATACCTTGT
TATTCAGCATCACAATAAGGCAGAGTCTTTTTGacagctaaaaatatttt
cagaatttaataaacgggggtccTATAGTTCCGGGGTTGGAAATGAACAA
GCGGAGTGCGTTTATTAGGCATCTGAGAGTAAAAAAGGTTTTCTATGAAT
TTTTCTACTTGATAGAAAAAATATAGGAATATACTGGACTATACAGAAAA
GTTTTATGGATAGAATCATCAGAAGAACAGTTCAATCTCAATGTCAAAAC
TTTTTCAGTccgttttttctttatttctttataaCAATGCAGTCAACATT
TTAACCATACacaaattcacttttttcattATGTTTGAAGGTTGGATTAA
AGCTCAAGATCCGTATGGTTGGTTCCAATGGTATTGTCGTTTCTACTTAG
GACGTCGAACGGAAGATGACGAACGTCAAATCGGACGATGGCATCGTTTC
TTATCTCGATTCAAAACAAACCtggtcaataaaatcaaaaaagcagACGC
CAGTTATGATAATTATACCATTTCACCTGTCATAAGACAATCTCTTTTAC
ACTGGGGCTACCAAATAGTTCCGCAAGATTTAGGAGGCAAACGAAAACCA
AGCGAGGAAGAGTCAGAGAAGAATGTCCCATTGAAATGATCAAGGTGCAC
TGATGGGAAACTGAACTTGTATAAATTTGATGTTGTTTATTGATGGCATA
TATTTTTCGTGTATGTTCAACTACATTACGTTTTAAGAAGAGATTCGGGT
CCTGCCGCTGTTCGATCGGACCATGCCgttgttcttaaccttttgtaTTA
GACCGGCGTAATAAAGTGCTCAATGATCGATTCTCCTGCTAGGATATATT
AAACAAGCAGGTCGTTcgtattttttatttacttttaagaTATTGATGTA
TAAGATGTCAtatattttgtttatattttcatgTAAATTTGTCTGCATAA
CTGTAAAAAAGATTCTATTTTAAGGCAATCGTCTGTATGTTATATCTGTA
CATCATCTTGATCTGTTGCATACATACTTTATtgggcgtacaaactttcg
cgagcagaaatttTCGCAAGGTCGAAGTTTTACAGATTCTGTATTTTGCA
ACGAATTTTTCGCAAACTTTCA Coding sequence (CDS) from alignment at sc0000073:486345..491316+ >TCONS_00007043 ID=TCONS_00007043|Name=TCONS_00007043|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0000073:486345..491316+ (Clytia hemisphaerica)
ATGCGGCATTCAATCAATTTCAACCaaagaaatttcaataaaacatTTGT
TCAGGGAATCATGGCATCTGttgaaaaactaaaaagaaaaagcagTAATT
GTGCTGGGGAAACCAAAATAAAGAAAGCTAAAGTTGATAAGGAAAAACTT
CCTAAAAGGAACAAAAGAGGTGAATTGAAATTCGCTGACCATCCTGATTT
CCGTCCGAATCGAACGCCAAAAGAGATACTACAAGCAGGTGCCTTTGGTG
GTGGTTACTTCAGACCAATCAAATCTGGCGTCAccaatgaaaaatataaa
gacTGTTGGAAAGAATTTCCAGAACACTGGTTTGAAGGAGTGAAACCAAG
TTTATCTATTGCGAACTCAACTTATGATAAATCAAGGAATTTTTATAAAG
TCAAATGTGGGGCTTCACTAGAAGAATGGGAGTCGAGTGGTTGGATTAAA
GCTCAAGATCCGTATGGTTGGTTCCAATGGTATTGTCGTTTCTACTTAGG
ACGTCGAACGGAAGATGACGAACGTCAAATCGGACGATGGCATCGTTTCT
TATCTCGATTCAAAACAAACCtggtcaataaaatcaaaaaagcagACGCC
AGTTATGATAATTATACCATTTCACCTGTCATAAGACAATCTCTTTTACA
CTGGGGCTACCAAATAGTTCCGCAAGATTTAGGAGGCAAACGAAAACCAA
GCGAGGAAGAGTCAGAGAAGAATGTCCCATTGAAATGAATGCGGCATTCA
ATCAATTTCAACCaaagaaatttcaataaaacatTTGTTCAGGGAATCAT
GGCATCTGttgaaaaactaaaaagaaaaagcagTAATTGTGCTGGGGAAA
CCAAAATAAAGAAAGCTAAAGTTGATAAGGAAAAACTTCCTAAAAGGAAC
AAAAGAGGTGAATTGAAATTCGCTGACCATCCTGATTTCCGTCCGAATCG
AACGCCAAAAGAGATACTACAAGCAGGTGCCTTTGGTGGTGGTTACTTCA
GACCAATCAAATCTGGCGTCAccaatgaaaaatataaagacTGTTGGAAA
GAATTTCCAGAACACTGGTTTGAAGGAGTGAAACCAAGTTTATCTATTGC
GAACTCAACTTATGATAAATCAAGGAATTTTTATAAAGTCAAATGTGGGG
CTTCACTAGAAGAATGGGAGTCGAGTGGTTGGATTAAAGCTCAAGATCCG
TATGGTTGGTTCCAATGGTATTGTCGTTTCTACTTAGGACGTCGAACGGA
AGATGACGAACGTCAAATCGGACGATGGCATCGTTTCTTATCTCGATTCA
AAACAAACCtggtcaataaaatcaaaaaagcagACGCCAGTTATGATAAT
TATACCATTTCACCTGTCATAAGACAATCTCTTTTACACTGGGGCTACCA
AATAGTTCCGCAAGATTTAGGAGGCAAACGAAAACCAAGCGAGGAAGAGT
CAGAGAAGAATGTCCCATTGAAATGAATGCGGCATTCAATCAATTTCAAC
CaaagaaatttcaataaaacatTTGTTCAGGGAATCATGGCATCTGttga
aaaactaaaaagaaaaagcagTAATTGTGCTGGGGAAACCAAAATAAAGA
AAGCTAAAGTTGATAAGGAAAAACTTCCTAAAAGGAACAAAAGAGGTGAA
TTGAAATTCGCTGACCATCCTGATTTCCGTCCGAATCGAACGCCAAAAGA
GATACTACAAGCAGGTGCCTTTGGTGGTGGTTACTTCAGACCAATCAAAT
CTGGCGTCAccaatgaaaaatataaagacTGTTGGAAAGAATTTCCAGAA
CACTGGTTTGAAGGAGTGAAACCAAGTTTATCTATTGCGAACTCAACTTA
TGATAAATCAAGGAATTTTTATAAAGTCAAATGTGGGGCTTCACTAGAAG
AATGGGAGTCGAGTGGTTGGATTAAAGCTCAAGATCCGTATGGTTGGTTC
CAATGGTATTGTCGTTTCTACTTAGGACGTCGAACGGAAGATGACGAACG
TCAAATCGGACGATGGCATCGTTTCTTATCTCGATTCAAAACAAACCtgg
tcaataaaatcaaaaaagcagACGCCAGTTATGATAATTATACCATTTCA
CCTGTCATAAGACAATCTCTTTTACACTGGGGCTACCAAATAGTTCCGCA
AGATTTAGGAGGCAAACGAAAACCAAGCGAGGAAGAGTCAGAGAAGAATG
TCCCATTGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007043-exon-sc0000073-1491911889:486345..486791 | TCONS_00007043-exon-sc0000073-1491911889:486345..486791 | Clytia hemisphaerica | exon |
| TCONS_00007043-exon-sc0000073-1510915933:486345..486791 | TCONS_00007043-exon-sc0000073-1510915933:486345..486791 | Clytia hemisphaerica | exon |
| TCONS_00007043-exon-sc0000073-1575043694:486345..486791 | TCONS_00007043-exon-sc0000073-1575043694:486345..486791 | Clytia hemisphaerica | exon |
| TCONS_00007043-exon-sc0000073-1491911889:489716..489985 | TCONS_00007043-exon-sc0000073-1491911889:489716..489985 | Clytia hemisphaerica | exon |
| TCONS_00007043-exon-sc0000073-1510915933:489716..489985 | TCONS_00007043-exon-sc0000073-1510915933:489716..489985 | Clytia hemisphaerica | exon |
| TCONS_00007043-exon-sc0000073-1575043694:489716..489985 | TCONS_00007043-exon-sc0000073-1575043694:489716..489985 | Clytia hemisphaerica | exon |
| TCONS_00007043-exon-sc0000073-1491911889:490535..491316 | TCONS_00007043-exon-sc0000073-1491911889:490535..491316 | Clytia hemisphaerica | exon |
| TCONS_00007043-exon-sc0000073-1510915933:490535..491316 | TCONS_00007043-exon-sc0000073-1510915933:490535..491316 | Clytia hemisphaerica | exon |
| TCONS_00007043-exon-sc0000073-1575043694:490535..491316 | TCONS_00007043-exon-sc0000073-1575043694:490535..491316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:486345..491316 + |
Blast
The following BLAST results are available for this feature:
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