TCONS_00007041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007041
Unique NameTCONS_00007041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007041 ID=TCONS_00007041|Name=TCONS_00007041|organism=Clytia hemisphaerica|type=transcript|length=672bp
AGTTTATTGATGGAATTTGGCGACTGAAGATTGACGTCACTGctttgttg
aaaatatttgacgtcaatcaaaaaaggagaaaatttaaAGCAGTTTTTTG
AGAAACTAAACTTCTAACATCAAACTTAAATATAAGAATTACAATGGACT
CTCATGCGAAAGAAATGCGGTCTAATGTTCCACTGAGACTTGACCGCACC
TACTTATCACCTACTAGAAGGCACAACCCACAAATGTTGGGCTTGGTTTA
CCAATCACCGTTGAAGCCTGAAGGACAGCATTTGGCGATTTGGGATCATG
AGCCAGTGTTTCGTCAAACCATCTCTCGCTTCCCAAACCTTATGAACCAT
TTAGGCATGGTGAACTTTCACAGTGGTAATCAAGCAAATGTCTGGCCAAG
TGACAGACAAcgtGCACCACCAGTCATCCATCGAAGTTTGAAATCGACCA
ATCGGTACAGTTATCAAAACCCGAACGAGTATACCGGACTAGCGAACGTG
TCTAAACAACTCAAACAAAAAAGTTGCCGACCACCAAGCAGGCCTGCCAT
CGGCATAGTACCACGGCTGATCGCAAAGGATGGGCAACGACCAATCAGAA
TTCGAGCTGGAGCCAAAACACAATCAAGACAGTAGTAGCAAAAATGTGAT
TCCTTTTTGTCataaagtcgaa
Run BLAST on NCBI

protein sequence of TCONS_00007041-protein

>TCONS_00007041-protein ID=TCONS_00007041-protein|Name=TCONS_00007041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MDSHAKEMRSNVPLRLDRTYLSPTRRHNPQMLGLVYQSPLKPEGQHLAIW
DHEPVFRQTISRFPNLMNHLGMVNFHSGNQANVWPSDRQRAPPVIHRSLK
STNRYSYQNPNEYTGLANVSKQLKQKSCRPPSRPAIGIVPRLIAKDGQRP
IRIRAGAKTQSRQ
Run BLAST on NCBI

transcript from alignment at sc0000073:422628..438772+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007041 ID=TCONS_00007041|Name=TCONS_00007041|organism=Clytia hemisphaerica|type=transcript|length=16145bp|location=Sequence derived from alignment at sc0000073:422628..438772+ (Clytia hemisphaerica)
AGTTTATTGATGGAATTTGGCGACTGAAGATTGACGTCACTGctttgttg
aaaatatttgacgtcaatcaaaaaaggagaaaatttaaAGCAGTTTTTTG
AGAAACTAAACTTCTAACATCAAACTTAAATATAAGAATTACAATGGACT
CTCATGCGAAAGAAATGCGGTCTAATGTTCCACTGAGACTTGACCGCACC
TACTTATCACCTACTAGAAGGCACAACCCACAAATGTTGGGCTTGGTTTA
CCAATCACCGTTGAAGCCTGAAGGACAGGTGCTATAAATCACTTTGTGCA
TTATTTAACTTTCTCAAAATGTGTACAGTTGGCTAAATTGTAAATTGGTT
GAATTGTCATCAATAAAATGCTAAGTTTATCAATGGAACTTTTTGGTTCC
AAAACTCTATGACTATGATTCAGTAGAAAGTCTTTTCCCAACAAAAGTGG
TTTTGATCTGTAActttgttttgcttttcttcTTAGCATTTGGCGATTTG
GGATCATGAGCCAGTGTTTCGTCAAACCATCTCTCGCTTCCCAAACCTTA
TGAACCATTTAGGTAAGCTAAtatttgtttcaaaatcttaaagGGCTTAA
TATACCTGATATAAGTGAACGGTACAAACCAGTAGTACATATAGAAGGTT
TCATGGGCGCTGTGGCGGGTAAAGTGGAAATTGACTTGGTTTCTGCTCGG
ACTGTagcacttggcaagtgaatgaaccttcgccagGGTCAACCAATGCC
ATATGAGGGGGATTGGATAGTTAGTCCAAGGTGCTAACGGGGTGTTCATT
AAAAGAATCTATAGTTGCAAATGCGCTTCAAAGCCAGCAGCAACTcatca
accaaatagaaatagctAAGCTCACGATCCGGAGAAGTCTAAATAATATG
AGATGGAAGCATCCCTTCTCGTCAAAAGGATTTTCGTTCGAAAAACGAga
tagaaaaatatatatgcCATACAGTATTGGGCTTGTTTTCTAACAAGTTG
TTTTCTTTTACTCTTGGAACaatttaaattattattttctgTTTGGTTAT
AGGCATGGTGAACTTTCACAGTGGTAATCAAGCAAATGTCTGGCCAAGTG
ACAGACAAcgtaagtttgaaattatgtgaaaattatttttttacttttat
tttttcttcactttggtATATTACAAGAGGATAAATCATGCAAAAAACCT
CGTACGCATTTTGGGTGAAAAACGATTTTTAAATCGAAATTCTTTTCCGC
AATAATGATAGTGACCGCGGTGTCAATAAACTCTGATTAAAGATGGTAGA
TATAGGCCAGAGCTAATAGAGGTTAATGCAATATAAACCTCAGTTGATAA
GAAATAGATCGGTTTTTAAAATAGAATATATTTTGTggacaatttttaaa
aatgagtTTACAATTGATATCTGTTAAAGAGCAAGATTGAACGTCAGTGT
CTCCTGAAACGATAGATATAATATAAGGGTCTTCATCCTCGTCAtcaaat
gtacaaaatataaaaaaactttgcGAAAACGTATTTGAAGATCGACAAAG
CAGCCGTATAAAATTTCAATCTTTAATAACACAATAAACGCTCAGACACC
CGAGTGAATGTCCGAACGCCAATTTTCCATTATCAGCAATGGGTGAATGC
ATACTAAACTGGAACACAGTTCTTTAGTTTATTATTCTAAAGGGTTGATG
AATCTTAGGCTGACATGATTTTTTCTcggatttttttaatcaaaatattc
CCTTTGTAAGGCTTGATTTAAAACTTACAGCATCTAGCGTCTCTGCTCCA
ATCACAACGTCCGCAATTAGGGTTGTAAACAAGATTTCTACCGGCGCAAG
GTTTGCACCAAGCGGTGTTCTGTCCACAATGTAGAAAAAACCAACCGTGG
CCTGCGAATATCTCATCGATACCACGTCTCGTACATTCAGAGTAAGATAC
TCGACCTAGGGAGACGAGGAGAGGAGTTGAAATGAAACTATACACTTTTT
CGCAAATAGCACCTATCTTTTTAACAGTGAAGAACTAAACCTTCTTAACT
CGAGCCTCTATCATGATTCGAGGCAACGAGATTGCTTCCCTTTCAGATAT
AGAATCTACAACTCAAATTCTTTGTGAATACAGTGCAGTCTCCATATCTT
GAACACACACGGGGgacacaaacttttttcaacaaACATTTTGTGATAAG
GgaattttgagttatggaatTAAGGTTAATAAgccattgttaactgaagg
gacaagaaaatttcgaactatggagacattcgaattacagaggttcgagt
taaagagactccgctCCATTCCATTCACGGAAATTAAAAATAGATACTTA
CAAGGAACCCACCATTgacctaaaaataagaaaaaagttgttGTTAAATA
GTGCTTTCATAGTTCAGTTACTATAATGCTTTACCCAACAGTACCACATT
ATGTTCTTACTAATGGGCAATTGGTACAATATTGCATTTCGTGAACGCTA
TCAGAATCATTGAAGCTACTAAGGGGTTGAGTCGTTTTCAGAATCATTGA
AAAAACTGAGGGACTAAAAGTACTCTTTGGAGATACCAGCAATTTGTGTA
CTGAGACGTAAACATCTTAATCAGAGTCAAAAACAGCTTCACCAAATTTA
AGACATCTATACTTTAATTCAAAGTatactttttagatttttttcataag
tctCCATAAAATAACACAAACAGCAATACAATACACATTACATTAACGAT
ACGAGATATATTTTCCATTACCATTTGAATCagctttttcaaaacatttc
cgACATGGTAAATCATTTGATGGCGGTTGGATTGGCGGAGTGGGTGTCTC
TGTTTCGGGTGTGGGTGGTTCAGAAGTCAGTGACTTATCTGTTGTTGGTA
TGGGAGGTGGACCTTGAGCTAAAAGGGAAAGTGAGAATAAAATACTTTGA
TAATTTGGTAAAAGAACCTCAATTCATGAtctgcaccattgcaatgtctt
ccgttccacccaatagctgattggttgaaagtgacatattgactgatttt
acgtcacttccaaccaatgagctattggttccgtgacgtaatgtcagaag
acattgcagtgaatATAACAGCTTGGTCACATCACATTTAACATATAACA
GCTTGAATACAGAAAATGTTTCCAGTGAGCCGAGTTGAATATTCTGCGAG
AATAAGAAAAACACAATTCATTGCTCCAAATACGGAGCTTGCTACTTCAG
TCGGTGATAGAAGCGCTAATAAGACTTTGATGTGCGGCATTGGAAAAAAG
AAACAGGCAAAAGATTTGATCAATTTCATAATAATTCTTTGTAGAATATT
TCCTACACTGcacgaaagcatccaccgaaggaggacttcaaaatatctgt
tctgaaggcacgttccagctggatatggcggtctgttcttaccgaactaa
agaaaaaagtctgctggaaaaaagtggtctgttctactgaagattgggac
cagctgaaaaaatatggtctgttctactgaagattgggaccagctggaaa
aaaatgatctgttctactgaagattgggaccagctagaaaaatatgatct
gttcttatgaaaaaatagtctgATATCTTATATTAATAAATAacgtgtct
aagaatttcctatctgttctgagggaatttaaaaaaagtcctgaatgtgg
ttgcctggagtggcagctgaaaattctccatctgtNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNggggggtttgtacttttacggtatg
acgggattggcccttttttagtacggtattacgggatttgacgaaaaaaa
gacgggaaaacggtatttggccttattttttgtcattatgccggtatttg
aacctgtacaaaccggtgtgacggtgttattattttttttcaattttttt
tcccgggattccgggattcagcaaaaactttgatgggaaaacggtatttc
aaacccctacaacccccccTCCAAAGAATATCGAAACCTAACAACAATCA
TACCCCGATGTTGAAATTAGCTCAAGTCTCTGTACACACATCAAAAGTTC
CAGTCAAGAGCTTTAAAGATAGAAACTATTTCAaaattgatgactttttt
ttcaaaaaaaattgctcCTCTAATTACCTGAGTATCTTCAACGTAAGTAA
CCTAATTTATGGCCACCCTAGCATCAACTCTGATGCCAAAAAAATACACG
TATCAAGGTTAATGTCACAAGAGGATAAAAGTTCGCGTTTTTagtattta
aaattttcaacctgTTAACCTTACTCAACTCCACCTAATTCTAAGCTGTA
CATAGTGATTCTAAAGGAGAGTTTTTTAGCTTTATATCGGAGGAAAAAAT
GCTGTTTTAGCATTTTCGATTATTTTTGACACCCTTAAAAATTGACATCA
ACCTTCGACATCATGTCCGTCAAGTCGTCAACGACTGACGTATTTTTGGG
CATCTTTGCAAGGTAAACAACAAAACATTACCATATAAACATACAAAATG
GCGacaaaatggcaaaaatgtttCGAACCAGAAATGAACCAATTTTGATA
TGAAAGAATTGTATAACAACAATCATAACCCCTTTAGAACTTCTCattga
gtttgtttttaaacttaTTGATATAATAATTCTAAGCAAAAATAAATGTG
ATATGACCAAAAAGAACCATTAACACGAGCTTAAGCTTAAGACAAAGCGT
TTTTAAAAGGTCTCTCAGTTCATAAGGCCCTTGGTGATGTGGTTTTTGTC
TTTTGGTCAAAACATAAAGTTACAAAGGTTTTTTTGAGAGACACCGCCAC
ACCACATTTCAAGCCAAGAGAAAACGATTTAAGTTGAAATGAAAAGTGGC
TTTGACGGGCCCTTCTTTTTCAACCCCCATTCCACGCAAATTCTACTAAC
TACACTGATAAATTGGAGACATGGTGTTATTGTAGCGTTGAAAATATATT
CTATTGTATGTTCTTGAAATAATATATTTTACGCATAAAATCTAAAATGC
GGTAAATTCCTCTGCTTCTTCTCAATGTCGATGATTCCTGTAAAACgaac
aaaattcaaaatcaagaTAAAATCATTTTGACAATGTCAAAACATTGAGT
ATAATAAACCGACATTAAGGAAGAGATTGTCAATACTTACAACACTTTGC
GTCACGAGTCCAATCGCAACGTCCGCATTTGGCATTGTAAACGAGGTTTC
TGGCGCCGCAAGGTTTACACCAAGCAGCATCGGCTCCACAATGTAAAAAG
TACCATCCGTGACCAGCGTGCATTCCGTGAATGGAAGCCTCGTTTGCACG
CATTGTGCACTCGGAACGTGCAACTCGACCTGGAATTTAGTAGAGAGTAA
GATTAGCTGATTGTTGGAAGTTTTCAGAACCCTNAGATTTGGAAAGTAAA
AGTATAGCTGATAGAAGTTTCAAGAACCCATTGCTCATTGGTATGTTGCA
ATTGCACACCTCCTTCTCGcagacctggtaggatttttttagccagtggg
gttaaaaataacggactgaaaatcgatgaggattgatatttccatatttt
taatggaaattcttttttttttcagatcagtggggatggggaaaatagca
caatattttagtgagggttggtttatttgattatcttCAGTGAGGACGGA
ATtttgagtataattttccactgggaacgatattttggacaatttttcca
gtgggaagaggtcccagtgggtcttCGAGAAAGGGTGTAATTGCTATGGT
GTATTTATTGTTTTGTATTGCAGAAACTGGAATTTGTATACGGctttaaa
agataaaaagtaTCGACTTACACATATCATACCATCGACCTAAAAATGGA
AAAGATATCAAACATTATTAGGTTTTAAATGAATGAAAGCCACAAAATGC
GTGAGGGATGTCATGGGTAGAATATGATAGAcgataaaatttatgaaaac
atATATAAATTAGCAAAATGCCTGTGTTCAAAACCTAATTATCTTATAAA
CTTTGCGTACTAATAGCTAATAGGTGCTAACTCAATTTAGTTAATTAACT
TTGGCTTGACTAAGTGGCTGAGCCAATAATTGTATGTTTTGCACATGGCC
CTACTTTAACAAACTATCGTAAAAAAGGTTCAATCGACAAAATCATTAAC
AAGGAAACACTTTGTCTCAGTGACCCGTATGGAATTTGAGTCGACACGAA
TCTAGTAATGGCATTATAAATATGCGGCGTTGCAACAATTTCATACCATT
AGCTCTTGCTTTGTCGTAACATCCTCGACATGCCAACTCTGTGGATGGCT
TTTTTGTGGTAGTTGGCTCACgagtggtggtggtggtggtagGTTTAGGA
GTGGTAGTGGTGGGGAGTGGGGTAGTGGTAGGCTCTGGAGTGGTGGTAGG
CTCTGGAGTGGTGGTAGCTAGACAGAATAAAAAGTTATCGCTATAAATAT
ACCTTGATAAGTACAATTGCAAAATTGCCTTATTtccattgtttactttt
tatcttaGATGTTATATTGATTTCTGACCATGTTTAGATTCTCTAGCATA
GAGCTTAGTTGTAGAGAGCAGTTTGGTTTGTATGTattaaaactaaaaca
aaaactaatcATAAAGCATTCAATAAAATACTGTTCTTCAACTTAACATA
CTTGTTGGACATTCTCCATTGTTGCAACTCTCAACTTTCACTGCGGGTCC
TTGACACTCAGTTCCGCAATATTGTGATTCCGGATTATCACACATTCGGA
TGTAAGTGATCATTCCGGCACCACACGATTCGGAACATTCACCGGATGGA
ATCCATTCGCTCCAGTTGCCATTCActgttgaaaaaatatcaacttttaa
TACACTTCTACTTCAACAAAGTTAATTagaacaagtaatactttaatgga
cctacctatttataaaacgaataattagaatttaatggaagtaatgtata
attttaaatttcgatttatatatctattggaacNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattga
atgagccaatctcgagaaaagttggtaactaacgaacgaactaacgaaca
cgggttaatttataggaccttcaccccaccggggtaggtccaacaatcTT
CTTATAGCTTTTCAtggcgtcctccagctttttggtcccccctaatatga
gctaaaatcccccatctggcctttcccccccacctgtctttaaaattcgt
gCTCCCCCCCTaattgggaaatccccctagccgtattgtataagggttgc
gaagtgatgatccagactcgcctcaattcgaaagctactatagcaaaaaa
aaagactctcaagaaaaaatcccaagaaagacaggctcataagcctgaat
gcccaaacacaccaggaaggtctgtatttatcctattactccccCCACTA
GGTAGAGGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNctattcgcctttctccccccatcaagcttgaaattttcacttccccc
ctggcaccaaaatctgattccccccccatcttcctggggggggggatgat
cccatggcttttgcttttatataattttgattAGTGCTTGACTGTACTGT
TTGTACTGTGGTCATCAGTTGATAAAAAAAAGCACTCGAAACTTTGCAAA
ACATGTTAAACttgaacccagtcccttagttcgtTTTTTTGTGATTCTGA
TAACGCtcacaatcagtgccataatatattggcacttttggctaatttac
catttttcaaaaattgaagttcgagcgagaatgtcaattttaggccttca
acttgatttgcgatcgattatttcgatctgggagggatttattggtttct
aggctatatttttgaacttttggatcctcagatcctaaggtcctaagttt
taagtctagcgttaaaactcagaattaaaactctacctttcgaacctact
ttagagcacttgcaaatcgattaTGGTTTCAagacttcccggtggatttc
ccttttgtgccaagtatttcgtcACTGATTGCAGGCTTTATACATCCATA
acagtaaaatcaaaagttgcaCACGTAGCTCTAGGTAGGTGATCGAGTGC
ACATGATAACTTACCAGGACACATGACGTCAGCATTGCAACCGTACagtt
tttcttcactttctccTTTACATGGTGTTCCCCCATATTCAGCGATCGGT
GCGCTGCATTCACGTCTTCGAATCTAAATAAACAAATAAGCGTGAGAATT
TCTTGCTATGATATGCCCGTCTCCTGCTTCTCCATCATTTTGTAGCAAAA
TGCAAGAATCacttaaatgtttttaacaGGACACCGTGGGATCAGATCTC
TATTCGTTTTTATTGATTAGGTGATTGAATAACATGATCTTTATCCCCAC
TTAGGTTGAAAGTTATAGGGAaggaaatacacgtttttttttattagaac
acctaaagtTTGGCtaagcctggatgtgcttatttttttagaaattttca
gcctaaaatgttcttaaatgcgttcttaatttttcagttaaaactgcttg
aaagaggaaaaaattgtagtttcttgtcatttttttccaaactgaggctg
ggcatgttcttacgatgttcttaatttttcaacgaatttcagcctcaatg
ttcttataaactaggttctaataaaaaaaaaaacgtgtatgtgctTGGTC
TCTGTTCCGgcctttttcttgaaaatattgCCTGCTAACCTGAAATCCAC
CTTGTTTTTGACTGTCACAGGTGACGGAACAAATACTCCATGCGCTCCAC
TCGCCCCAGCCTCCGTTTACTGTGgcggaaaagaagaaaaaatttataAG
ACAAAGTTATGAATAAAATCACAATTCACTTGGAGTGGGGGGGGGGAGAG
ATTTCGAGTTTGGAAACAAAACCTACACCTAGCAGGTACAGAGGCGACGC
GTTGACATTAAAATCATCAGCCCGTTGTATTTATCCAACGTTATATCTTT
TGCTCTCGCCTTTTGCCATTTTGAAGTGCATATTGTAGATTCTGAGATTT
CCGAAAAGGTTTTTTAGACGGGAATGTAGAGCTGTTTTGAGAATATAGAA
ATCGAGAGGTAGAAATGCtcagaaaatatttcaataccTGGTTCTCCACA
CTGATCGACATCAGAAGctaaaagaaagaaaggaaaGATTGAGAAATGAC
TTGTGGGATAAATGGAGAAAATCTACACgaataatttaaaacttttgagg
TATTAAAATATTTCTACATTACTTTGAGCAGATATTGTTAAAAGTATAAG
ATATATCACAGTAGTTATCATTTTCGTTAAAGGACTCGAGAGAGGCTAAA
GAATTTTATTCTAATGATGACCCAACAACACAAATCAAATGTTTCTACTG
CTAATGTTGCATAGAAATTTCACGCTATTTATCCCCCTAAAAGTTTACGG
GTAAATTTTAATCAAAGCACGTTTGAAAACATATGAAATAcgtcaatatt
ttgaaatctgtTCAAATGACCAAACTTTTAGAAAGTTATTTGGCATTTCA
GCTTTATTTGATGTGTGATGAAAGAAGACTTTCTTTCTATAAAATATAAA
TTAGTAAATGAATGTCATCGAGGGCCTCGTTCTCAAACTGTCGTTGCCAA
ATTGTCTTAATTACATGGAGGAGTGGAGGATTTAGTGTCCGGGGGGGGGA
GAgagtagtgaaaaatctaaagaatttgccttgtcctggggtaaacttgc
tctacttgggggtaattttgaatgtccagggggccAACTGATGCTTCTCC
GGGGGTTTAGAActgttgtccgggggtcaaaagtcacaatgtccgggggg
tgTTCGAGAAATATTTTGACTTGGAGTCGACCAGTTTTCATGTTTAGGAA
CATCTCAGTATATTTGCTTAATAAAGGAAAGCATCGTATCAAGTTTCCAA
ATATTGGTCAGATTTAACTTGGATATTTGATATGTTCATTCTGCTGAAAG
CCTGCTTTAAAATTACGTATGATGAGGTCTACGAAAGGGAGCATTTTACT
TGGGACCCCTATCtgatatttcaatttcaatgcAAAAGCGGGTTAATTTT
TGTCGAGTTTGGCGAATttagcaaaatttacaaaattgctgccttttcaa
atttaaaagttttttcatgattttctaaaatattcccTAATTTTGTCGAA
AAAAAAGAACCAATTTACCCTTTTGCTAAAATCAGCTCGAAATAACCTCT
CTCATCATAAAAGGTAGATAATTATAACCAGATCATCATGATTTTCTCAC
CCACCCCGTTAtaataatttcttattttcaggtGCACCACCAGTCATCCA
TCGAAGTTTGAAATCGACCAATCGGTACAGTTATCAAAACCCGAACGAGT
ATACCGGACTAGCGAACGTGTCTAAACAACTCAAACAAAAAAGTTGCCGA
CCACCAAGCAGGCCTGCCATCGGCATAGGTGAGTTGTCATACTTTAATGG
GTTTAATTTTTGCGGGTACTTAACTTCGCAGTTCACAacggttcacagct
caaaattcggaagtttcacggaattaaatttcgcggctgagaggattttt
tgtttaaaaatatggtCAAAATAAGGATGATACTTTAAGGgggcataact
tttgatgcaaaAGCTATTACTTGCATAAATACATGGCATTCTTTTAGATC
TACGtcgtttgatttttttgggtatttttcctcgttttgactaatttttc
atcaaatttgatttttcatgtatgaattccgaaaagggggaataaaaact
ttataataccgaaattccgaagcataaattcatggatttccgataccgaa
acaatttcagcattCCGAAGTACCGCACTGAAAAAGGCTTGGCAGTGAAC
GTGTTTAAAGAAAGTGAGAAACAAGTTGTgtacccctttctcacagacac
actggaaaaattgacccAGTAGAAagttatcctccaatttttgtcccctc
TGAAAGAATGAAACAACCAATTCTCActacaaaatattatgctattttta
ccatccccactgaattttttgacttgaaaacaaaggaatcctcagccata
aaaaacatgggaatttcaatccccatcgagtttcagtccgtgtCGTAATC
AAAATTTAGAGGAAACAGAATTTTTAGtaaaggaatttaatttggcggat
ggccgaaaagtGAATTTGACGTTGCAAtgaaggatatttttggccagaAA
TCCTTTCCAGCTTGGCTAATTGATTATGAAAGGATAACCAGATAAAACTT
AGCTCAGAGATTCATTCCATGGTCCTAGTATAGTAAGACCACCgaatatt
ttgaagaaaaaacacaaTCTAAAGAAGATATGAGgacttaaattttcaga
ttttcgttTCTCACGTTGAAATTCCCAGACTGTCATCAATACAACAATCG
AACAAGTTCGAACGAAAATCACGATCGTTGGATAAGTACCAACGTGTACT
CGTAAAGgtcgaagcaaataacaattcGCTGTCGAATTAGTCAATGAAAT
CACtgctatttttataaaaactttgtcCGAAATTTTATAGGGCACTTTAT
AGCTTTGGAACTTGCAGTTATGAATACAAGAAactttaaattgatttttg
agTTATTGAATTCTTCTATCtacatgaaaaaatatttacaaaaggaAAAA
ATACAAGATCAAAAACTACAATTAAAAAATCACCAATTAGTTGGCTGCTT
GGACAGTTTCCTTGCTTTCTTCGGGGACTACAGTTTCATCAGTTTTCAAC
TTTTTGAGGGTAGTCGCATCTTCTTCTTGTGATAATTCTTTTCGTTTGTT
ATCTTCTGAATCCTTCTCGTCCGAAACTTCTTCTGTCGTCTCCCCTTCGA
CATTTTCTGGTTGGCTTTCAGTTTTTGGTTCTTCGGCTTTTGAAACCTCC
TCTACTTGAGCTGGTTGTTCGACTTCAGTTGCTTTCTCCTTAGTTTCAAC
AGCTGGGGCATCAGTAACCTCTTTATTTTCAGTGTCCTGGCTTGCAGATG
GAGTAGTTCCTTTAGTTGAAGATCGTCTACCACGAGGCATTTTGTTGTTA
GATTTATGAAAACTGGAGTACGTGTCTTCTTGCttattttttaacaaagt
cTGGCACcgaatattttcataaatttgtaAAGTGTTGATTGATTCCCGTC
AATAAGCTTTTCGAACGTTCGTTTATCCCTTTAATACTTTCGAACGTTTA
GTGGAATCGCGGACGCTGATGGACCATCTATTTCAGAACTTTCGAACGTT
CGTTTATCCTTCGAGCGATTTTTGAGCTCGACGAAATTAGCGGACGTGAA
AGGAATCTCgattttcaaaattcgaatgttaGTTAATCTTTCGAATTCTT
TCGAATGTGAAAATATTCGAACGTCTGTTTATCCACTTTTTGAACATAAA
TGAGTGAAAGACATTTAGGGAAGTATCACACATCATCGATAAGTGGTAAC
TTCGAACTTGAAAAGTTTTCAAAGCAATGGCTGGAAGTCCAAAGAAACCT
GCATCAAGAGCTGCAAGCCCAAAAAAAGCAAGCAAAGCTATGAAGAAAGG
AGGACGAAAAGGTGGTGCCAAAGCAACCAAACGAAGAAGCAAAAGACGTG
AATCTTACACCATGTACATCTACAAAGTCTTGAAACAAGTTCACCCTGAT
GTTGGAATCTCAAGCAAATCCATGAGCATCATGAACTCTTTCGTCAACGA
CATCTTTGAACGATTGGCTGGTCAAGCATCAAGACTTTGcatccaaaaca
aaagaatgactATGGGATCTCGTGAAGTTCAAACATCTGTTCGTCTCTTG
CTTCCAGGGGAGTTGGCCAAACACGCTGTCTCAGAAGGAACCAAAGCTGT
CACAAAATACACCAGCAGCAAATAGATTTGTTGGAATAAAAAAACGGCTT
TTTTTAAAGCCACAAATCACTTAAAAAACAAAGTTACTTGATATATTTCA
CGTTGAGACTTCTCccctttttgttaaaatttcttgaGACCACTCCTCGC
TCAACGCTTTAATCGACCTCTTTTAAAGACtcaatttaatgttttttaaa
cCCCTTTGAGAGAAACTTGCGACCCTCATTTTTCAGTGtcacttttttcg
aaaaaattaaaaccgCCCTATAAGGTGATCGAACTTCCACTTCAACCCTT
CTCAGACCCGGTATGATTTTATCAGTTAGTGGGACCAAAATCGATGGGGA
TTTATAttccagaaaattcagtggggatggaaaaaatagcacaattttca
gcggggacaaaactTCAAGATTAATTTTCTactggggacaatattttggc
caatttttccagtgggaagggtgggtctatgagaagggggtgtattaccA
TCTGATTTGGTCCTTTTCATAACAAGAAGTCAATCTCGCCCCTGTAATTA
CAGGTTTTATTTACGCTACTAAAAAGACACAAAGAGAATACCTTAACCCT
CCCTCTAAAATTTCTCTTCATGCATTTCCTAAATTCACAGGTTTTTcgct
tacatgtttttttttttataagcaagtgtatgcccctttgtcaggctcgt
gtatgcttaagttctcaaagcatccaggcatagtttatgcttattacatg
cttaagaattatgcttatgattcaccccgagccaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaaaaaaaaaacatgtatcgtAAATTtccttctg
aaaatgatttcttttttataattaaATTTCCGCCAAATTTCCTTCATTTA
CTTAACTTAAAGTATCCTATTTATTGTATTATGAGGCACCATCGcactaa
aaataaaaacgttGGGAACGAGGTTACCTAGAAAAGTGTCTTATTTTGGT
atcaaatttatttcattttgtcTCTCTTTAGTACCACGGCTGATCGCAAA
GGATGGGCAACGACCAATCAGAATTCGAGCTGGAGCCAAAACACAATCAA
GACAGTAGTAGCAAAAATGTGATTCCTTTTTGTCataaagtcgaa

Coding sequence (CDS) from alignment at sc0000073:422628..438772+

>TCONS_00007041 ID=TCONS_00007041|Name=TCONS_00007041|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at sc0000073:422628..438772+ (Clytia hemisphaerica)
ATGGACTCTCATGCGAAAGAAATGCGGTCTAATGTTCCACTGAGACTTGA
CCGCACCTACTTATCACCTACTAGAAGGCACAACCCACAAATGTTGGGCT
TGGTTTACCAATCACCGTTGAAGCCTGAAGGACAGCATTTGGCGATTTGG
GATCATGAGCCAGTGTTTCGTCAAACCATCTCTCGCTTCCCAAACCTTAT
GAACCATTTAGGCATGGTGAACTTTCACAGTGGTAATCAAGCAAATGTCT
GGCCAAGTGACAGACAAcgtGCACCACCAGTCATCCATCGAAGTTTGAAA
TCGACCAATCGGTACAGTTATCAAAACCCGAACGAGTATACCGGACTAGC
GAACGTGTCTAAACAACTCAAACAAAAAAGTTGCCGACCACCAAGCAGGC
CTGCCATCGGCATAGTACCACGGCTGATCGCAAAGGATGGGCAACGACCA
ATCAGAATTCGAGCTGGAGCCAAAACACAATCAAGACAGTAGATGGACTC
TCATGCGAAAGAAATGCGGTCTAATGTTCCACTGAGACTTGACCGCACCT
ACTTATCACCTACTAGAAGGCACAACCCACAAATGTTGGGCTTGGTTTAC
CAATCACCGTTGAAGCCTGAAGGACAGCATTTGGCGATTTGGGATCATGA
GCCAGTGTTTCGTCAAACCATCTCTCGCTTCCCAAACCTTATGAACCATT
TAGGCATGGTGAACTTTCACAGTGGTAATCAAGCAAATGTCTGGCCAAGT
GACAGACAAcgtGCACCACCAGTCATCCATCGAAGTTTGAAATCGACCAA
TCGGTACAGTTATCAAAACCCGAACGAGTATACCGGACTAGCGAACGTGT
CTAAACAACTCAAACAAAAAAGTTGCCGACCACCAAGCAGGCCTGCCATC
GGCATAGTACCACGGCTGATCGCAAAGGATGGGCAACGACCAATCAGAAT
TCGAGCTGGAGCCAAAACACAATCAAGACAGTAGATGGACTCTCATGCGA
AAGAAATGCGGTCTAATGTTCCACTGAGACTTGACCGCACCTACTTATCA
CCTACTAGAAGGCACAACCCACAAATGTTGGGCTTGGTTTACCAATCACC
GTTGAAGCCTGAAGGACAGCATTTGGCGATTTGGGATCATGAGCCAGTGT
TTCGTCAAACCATCTCTCGCTTCCCAAACCTTATGAACCATTTAGGCATG
GTGAACTTTCACAGTGGTAATCAAGCAAATGTCTGGCCAAGTGACAGACA
AcgtGCACCACCAGTCATCCATCGAAGTTTGAAATCGACCAATCGGTACA
GTTATCAAAACCCGAACGAGTATACCGGACTAGCGAACGTGTCTAAACAA
CTCAAACAAAAAAGTTGCCGACCACCAAGCAGGCCTGCCATCGGCATAGT
ACCACGGCTGATCGCAAAGGATGGGCAACGACCAATCAGAATTCGAGCTG
GAGCCAAAACACAATCAAGACAGTAGATGGACTCTCATGCGAAAGAAATG
CGGTCTAATGTTCCACTGAGACTTGACCGCACCTACTTATCACCTACTAG
AAGGCACAACCCACAAATGTTGGGCTTGGTTTACCAATCACCGTTGAAGC
CTGAAGGACAGCATTTGGCGATTTGGGATCATGAGCCAGTGTTTCGTCAA
ACCATCTCTCGCTTCCCAAACCTTATGAACCATTTAGGCATGGTGAACTT
TCACAGTGGTAATCAAGCAAATGTCTGGCCAAGTGACAGACAAcgtGCAC
CACCAGTCATCCATCGAAGTTTGAAATCGACCAATCGGTACAGTTATCAA
AACCCGAACGAGTATACCGGACTAGCGAACGTGTCTAAACAACTCAAACA
AAAAAGTTGCCGACCACCAAGCAGGCCTGCCATCGGCATAGTACCACGGC
TGATCGCAAAGGATGGGCAACGACCAATCAGAATTCGAGCTGGAGCCAAA
ACACAATCAAGACAGTAGATGGACTCTCATGCGAAAGAAATGCGGTCTAA
TGTTCCACTGAGACTTGACCGCACCTACTTATCACCTACTAGAAGGCACA
ACCCACAAATGTTGGGCTTGGTTTACCAATCACCGTTGAAGCCTGAAGGA
CAGCATTTGGCGATTTGGGATCATGAGCCAGTGTTTCGTCAAACCATCTC
TCGCTTCCCAAACCTTATGAACCATTTAGGCATGGTGAACTTTCACAGTG
GTAATCAAGCAAATGTCTGGCCAAGTGACAGACAAcgtGCACCACCAGTC
ATCCATCGAAGTTTGAAATCGACCAATCGGTACAGTTATCAAAACCCGAA
CGAGTATACCGGACTAGCGAACGTGTCTAAACAACTCAAACAAAAAAGTT
GCCGACCACCAAGCAGGCCTGCCATCGGCATAGTACCACGGCTGATCGCA
AAGGATGGGCAACGACCAATCAGAATTCGAGCTGGAGCCAAAACACAATC
AAGACAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003938XLOC_003938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007041-exon-sc0000073-1491911889:422628..422905TCONS_00007041-exon-sc0000073-1491911889:422628..422905Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1510915933:422628..422905TCONS_00007041-exon-sc0000073-1510915933:422628..422905Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1575043694:422628..422905TCONS_00007041-exon-sc0000073-1575043694:422628..422905Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1491911889:423114..423189TCONS_00007041-exon-sc0000073-1491911889:423114..423189Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1510915933:423114..423189TCONS_00007041-exon-sc0000073-1510915933:423114..423189Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1575043694:423114..423189TCONS_00007041-exon-sc0000073-1575043694:423114..423189Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1491911889:423680..423736TCONS_00007041-exon-sc0000073-1491911889:423680..423736Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1510915933:423680..423736TCONS_00007041-exon-sc0000073-1510915933:423680..423736Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1575043694:423680..423736TCONS_00007041-exon-sc0000073-1575043694:423680..423736Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1491911889:434409..434555TCONS_00007041-exon-sc0000073-1491911889:434409..434555Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1510915933:434409..434555TCONS_00007041-exon-sc0000073-1510915933:434409..434555Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1575043694:434409..434555TCONS_00007041-exon-sc0000073-1575043694:434409..434555Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1491911889:438659..438772TCONS_00007041-exon-sc0000073-1491911889:438659..438772Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1510915933:438659..438772TCONS_00007041-exon-sc0000073-1510915933:438659..438772Clytia hemisphaericaexon
TCONS_00007041-exon-sc0000073-1575043694:438659..438772TCONS_00007041-exon-sc0000073-1575043694:438659..438772Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007041-proteinTCONS_00007041-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:422628..438772 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.149444	0.0867597	0.0848808	0	0	0.197029	0.184456	0.451998	0.239945	0.621058	0.357226	11.3134	9.79093	5.48234	7.3309	0.690272	1.88669	32.0118	25.2301	8.00131	10.0821	10.3672	8.30703	18.4284	16.7406	3.25714	4.26104	27.5558	25.9953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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