TCONS_00007037 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007037
Unique Name	TCONS_00007037
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3679

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000073:349203..359981+

transcript sequence

>TCONS_00007037 ID=TCONS_00007037|Name=TCONS_00007037|organism=Clytia hemisphaerica|type=transcript|length=3679bp
NCTTACAAGCGTATGTTTGTGCCGTACAACTTGATAGCAACCACGTAGCT
GCTTGGACAGATCTTGGTGTTTTGTATGAGACAGCTGGTAGATTTGAAGA
TTCCATGATATGTTACAAAAATGCACTAAAAGCTTGTGGCACCTCAAACA
TTGGGCTTGAAACAAGAATGAGAATTTTAAAAGAGAAGATGGCAAGTCCT
ATGGTTGCAGAAGTGAACAAGAATCTTCCAGGTATTGAAGCAGCTTGGAA
ACTTCCTATTCCAGCTGAACTCACCGCCAGAACAGTTGTCCTTGTGCAAC
AGgCAAGACTAAATCAACAGATGGTATTGCAAGGGAAGAATggagaaaat
ttacaaaagacCGAAGAAAATATAAACCTTTCAGAAATCAATTCTCAAAA
TGCACTAAAAGATAATTCTGATGTACCTATGACTGATATACAGCTAGATA
AACAGATTCTTGATACACTTGATAACACAACTAACCCAACCATGGATTTG
AATATCGATAGCAATATTTTTGAATCGGTAGCACCAGTAGCAGATGTAGA
TATGTCTTTACCAACATCAGGAATGAATTTAGATCATCAACTAGAAAGCA
CTGGTATCGATGAAACTCACCCAGAAACTAGTGGTTTATCATGGAACCAT
AACTCCCTTTCAATAAACGACGAATCAGAATTTATGAATCCTTTAATGAA
AGCAGACACTAACTTGAATCAAATGAACACTTCAGAATCTAATATACAAA
CACCTCTTACAGTACCATCTGATAGCAAACTCATGTCTACTAATAATGAT
TTGTCAGAAGTCATTACACCATCCACATCGTTAGGATTACCTTTAGTCTC
ACCCGTTGAGAACATATCAAAAGATGCTCCTCTTGCAGAAACTTCTTCAC
TAGAACTCCCTGAGAAAGAAGAACCAAAACCCACTTCACCTGTAGACAGC
AAAACTGAACCAGAAGTTCCTTCAGTTTTGAGTCCAGTAGAGCAAGCAAC
GAAACCTGACCAACCTGCAAAATCGCCAGCACCAATCCCTCCTCTTACAA
GCGGTTATGAATTGCCAAAGATTTGTTTacttttaaatgaaaatgaagtc
CCAAGTTTACCGCCTAGGCCTCCTCAAGTGCCTGTAACACAGTTATATCC
TCCTACACCTAGCATAACTGTTCAAGACAGACGTGAAGCCATGTCACCTG
CACTTCGGAACTTCTGCTATGATAAACGAAACCCTGTAACAGTAGTTAAA
GGCTTGTGCAAGGCACTCAAGCTAGatcTTAGCTTGTTTACAACTCGACG
TTTGGTGGAACAAAATCCAGACCATTCTATAGAAATCAGACACCAAAGAC
AACAAAGAACTGATGAAAATCTGGATGAAGAAGGCAAAATCACAGTATGG
CGATGTCGTAGCAGCAAATCGAAAATGACCATCGCAAAATATGCACAATA
TCAAGCCAGTACATACCAAGACTCCTTACAGTCTGAAGATTCTGAAGCAG
AGAgggagaagaaagaaaaagagaagaaGCTAGAAGAACAAGGTCTTCCA
AAgaaaaagaagaaattcaagATGATCAAGTTTGGGACAAATGTTGATTT
ATCAGACACAAAGAAATGGAAATCCCAGCTTGCAGAGTTGACAAAGCTTC
CATTATTCTGCAAGATTGTTTTTCCACAACAGGTGGTGTGTGGCAGTAAC
ATGCTATGCCACGTCGGCCATAACATCCTCGGTATGAACACTGTTCAACT
TTACATGAAGATCCCTGGATGTCGAACTCCAGgccATCAAGAAAATAACT
GTTTTGCCTCGATCAACATAAACATTGGGCCAGGCGATTGTGAATGGTTT
TGTGTTGATAATGATTATTGGGGAGTAATACACGAGCTGTGTGAAAAACA
TGGTGTCAACTTCTTATCAgGTTCTTGGTGGCCCATCCTTACAGAGTTGT
ATGATGAGGGTGTTCCTGTCCACAGATTCATTCAAAAACCAGGAGACTTA
GTTTGGGTGAACTCTGGAAATGTCCATTGGGTGCAAGCCATTGGCTGGTG
TAATAATATTGCTTGGAATGTTGGTCCACTTATACCAAACCAATTCAAAT
TAGCTGTTGAAAGATATGAGTGGAATAAACTGCAAGATTACAAATCAATT
GTTCCAATGATAAATCTATCTTGGAGCTTGGCAAGGAATATTCGAATACC
TGAAGGCCAATTAGGTGAACATGTGAAAGTTTGTTTGGAGCGCTCACTAC
GCTATTGTGTCCGGACATGTGAAATTCTTAAGGATATGAATATTGAAGTA
CAATGGCATGGTCGTGAGAAGAATGAAGCTGCACATTATTGTTCAACATG
TGAAGTTGAAGTGTTCAATATTTTGTTTGTCAAAGAAATGAACAAGAAGT
TGATGGTTCATTGTCAAGACTGTGCACGAAAAACAAGCGTCAGTTTGGAA
GGATTCATTGTTCTTAATCAGTATTCCATGGAAGAATTGGAGCAAGTTTA
TAACGCATTTTGTGTTAACATGGTGAATGCTGCCAAAGGATCAACCAGCA
CAACTGCAACATCTACAGCTGCTTCAAGTCAGCAACAACCACCACAAGCA
CCGCCCATCACAACAAGTGCTTCTTCATCTTCTGCACCAACGCCCAACCC
TCCACCCCAACCTGTTCCACCGCCACCAGTGGAAGAGAAAACGTGAATGG
GCGCCCTAACGTTCTCAAGTATGGTATTGTAATGTTGATAGTGTTATTTA
TTGGACTCCAAAACTAAATGCAATCTTtcctttattatttcatttagCTT
GAAATTGTAAAAGCTTTTTGATGGATATCCTATTGATATTAATGACGATG
ACTTTAGCAGTTGAAGACGTATTTGAAGCTATTTCATTTTGCCATTTGTG
CTTGAGTCTCCATTTGCACTTGCCAGAAGGCAAACACATTGAATGgcatt
tttttggcttttttttatTGTGAGAGTCTTCGTCTATTGTCCTATATGTC
AAGCAAATTTGCTggcaattttatcaaattatagTATGATAATGAATAGT
GTAATGTAATTTAGTGTATAATATTGAGTATGGTAATAATTATGatgtat
attacatattgtcaCTGGAATCATGAATGGTCTGAATCTATATGGTAGTA
GACACAGATAGATTTCGCATATTTCTCACCAATTATCAGTTTGTTCAGTA
ATTTTGCTGTCTTCAATATTaccccttttcaaaaattttttatcaataat
ctTTATTGCATAGTTAGTGAAATTATCATGATTTTTTTGTAGTTGTGTTT
TTTTAggactttttactttttactatTACTATTATGTGTTCTATTTGATC
TGTCCTTTGTctaatttttatgtttgaaattttatgTCCTTGTCTGATTT
GTTTTCTAAattaaaataaaccagctgcgctggaagctctaGCCGTAAGC
TGAGAAAGATGCAAGGATTAGATAAAATAAACAGGTCGGAAATGGTATGC
AAAAAGGGGATTCATAATATGCATAACTGTTATATTCTTCGGACATACCC
CAAAATTTTCTCCCTATTGCGCGTCATATGAGTGTCACGGGGGCCAAAAT
TAGCacataaagaaaaaaaacgaacTAATTAACTTTAGGGGTGATTTTCC
TAAGGGTAAAATTTGTTTGTGCGAATGGC

Run BLAST on NCBI

transcript from alignment at sc0000073:349203..359981+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007037 ID=TCONS_00007037|Name=TCONS_00007037|organism=Clytia hemisphaerica|type=transcript|length=10779bp|location=Sequence derived from alignment at sc0000073:349203..359981+ (Clytia hemisphaerica)
NCTTACAAGCGTATGTTTGTGCCGTACAACTTGATAGCAACCACGTAGCT
GCTTGGACAGATCTTGGTGTTTTGTATGAGACAGCTGGTAGATTTGAGTG
AGTCAGGGTgtatatttttatgattttgggtgttttttaaagttttggaa
TTTCAGAAAGTTTATTCCAGAGAGTGCGGCTATTCATGGATGGCTGTTTG
GCAGCCTATGGCCGTATATCTGGCTGATCTAACTCTGACACCTCTGCTCT
CAGTTACTTATCAAATAACCTAAGCTACTCATTTCTTTTGTTGAGACCAG
GGATTGATTGCTAGGTGAATACTCTGTCAAGCTACCTGGCACCTTGAAGT
AACCTTTTTCTCTTAATATTTTCAGAGATTCCATGATATGTTACAAAAAT
GCACTAAAAGCTTGTGGTGAGTCTTTGTATCTAAGAAGGGACTATTTTTG
ATATGGAAGGACCTATTTATTGAACAACCTGTATATACAAAATTCCTTTC
ATCAGATTACTATCCAAGAgattaaatcaaaaattgttgCCTTGCTAAAT
TTAGTCACACACAATTGATCCAatgaattttcatttctttttccaAAGGC
ACCTCAAACATTGGGCTTGAAACAAGAATGAGAATTTTAAAAGAGAAGAT
GGCAAGTCCTATGGTTGCAGAAGTGAACAAGAAGTGAGCTCCATAATGTT
ATTATTTGCTTTGGCTTCCATTTAGTCAGGTCCTTTTCATTCAACTCAAT
CCATTTAAACATAACATCACTAGCTGTAACTTATAAAAACCTTGACTTAT
GCTTTCAAACTTTTACTTGCTTCAACCTCTCAACtgggaaaaaattggaa
attttcaacatttcatcattttttatatGACTTACTTGATACCCAAAATC
ACCTCGTATCCATCCTTTTTTGTTACCTATATACCCAGTATTTATTTATC
GTCTCTGTTTTTATCAATATCCATGCCTCCATTTTCATCcattgttattt
ttgatttttttcttcattcagTCTTCCAGGTATTGAAGCAGCTTGGAAAC
TTCCTATTCCAGCTGAACTCACCGCCAGAACAGTTGTCCTTGTGCAACAG
GTATTGTGATTTACTTTTAGTTCACAGCGAGATGATATTTACATTGGTAA
CCTAATACaagatatttaaaaagaaagtatAAAAGGTTATGTATTAAATC
ATGATTTAAAAGGAAACTTGAAGGATTTTGATACAAGTTTCTTTTTGAAC
CCACCATAACTTACAGTACAAATTACGGGATTTTTTATATATTCTGCTTT
CATCCCAATCAATccttatttaaaattttaatttcaggCAAGACTAAATC
AACAGATGGTATTGCAAGGGAAGAATggagaaaatttacaaaagacCGAA
GAAAATATAAACCTTTCAGAAATCAATTCTCAAAATGCACTAAAAGATAA
TTCTGATGTACCTATGACTGATATACAGCTAGATAAACAGATTCTTGATA
CACTTGATAACACAACTAACCCAACCATGGATTTGAATATCGATAGCAAT
ATTTTTGAATCGGTAGCACCAGTAGCAGATGTAGATATGTCTTTACCAAC
ATCAGGAATGAATTTAGATCATCAACTAGAAAGCACTGGTATCGATGAAA
CTCACCCAGAAACTAGTGGTTTATCATGGAACCATAACTCCCTTTCAATA
AACGACGAATCAGAATTTATGAATCCTTTAATGAAAGCAGACACTAACTT
GAATCAAATGAACACTTCAGAATCTAATATACAAACACCTCTTACAGTAC
CATCTGATAGCAAACTCATGTCTACTAATAATGATTTGTCAGAAGTCATT
ACACCATCCACATCGTTAGGATTACCTTTAGTCTCACCCGTTGAGAACAT
ATCAAAAGATGCTCCTCTTGCAGAAACTTCTTCACTAGAACTCCCTGAGA
AAGAAGAACCAAAACCCACTTCACCTGTAGACAGCAAAACTGAACCAGAA
GTTCCTTCAGTTTTGAGTCCAGTAGAGCAAGCAACGAAACCTGACCAACC
TGCAAAATCGCCAGCACCAATCCCTCCTCTTACAAGCGGTTATGAATTGC
CAAAGATTTGTTTacttttaaatgaaaatgaagtcCCAAGTTTACCGCCT
AGGCCTCCTCAAGTGCCTGTAACACAGTTATATCCTCCTACACCTAGCAT
AACTGTAAGTCATTTATTTTTGCTCTATTCTTATTTActaaattattttg
tttcatCTATATAGTATAGTAAATTGTTCTACAACTTTTCAATTCATTaa
tttcactttcaaaatgttgtTTATTCTAATTTTTAAGGTTCAAGACAGAC
GTGAAGCCATGTCACCTGCACTTCGGAACTTCTGCTATGATAAACGAAAC
CCTGTAACAGTAGTTAAAGGCTTGTGCAAGGCACTCAAGCTAGGTAAGAT
TGTATTCAAacaattgtttattttttaatgttctcAACTCGctctttgaa
ataaaattagCAGAATTATAAAgtattattaaattttttttttgtttcag
atcTTAGCTTGTTTACAACTCGACGTTTGGTGGAACAAAATCCAGACCAT
TCTATAGAAATCAGACACCAAGTAAGTATGCATATATTTTTATATCCACA
TGAATATCTAATTAACTTCTTTTTTCAAGTGACAATTCAACATTTCTTGT
TTAAAAACCTtgttaaatttattttcctttctATAGAGACAACAAAGAAC
TGATGAAAATCTGGATGAAGAAGGCAAAATCACAGTATGGCGATGTCGTA
GCAGCAAATCGAAAATGACCATCGCAAAATATGCACAATATCAAGCCAGT
ACATACCAAGACTCCTTACAGGTTTGAATGAATCCCATCAGTTGCAGTTG
ATTATACTTGTCAATATTCTTAAAATACCAGACATTATTTCAATGATGAt
aaatcttcaaaaatggtaAAACCTTAATATCGAATGTAATCTCAACAGGT
TTCCAATGtctctctttttttatttaCCAGTCTGAAGATTCTGAAGCAGA
GAgggagaagaaagaaaaagagaagaaGCTAGAAGAACAAGGTCTTCCAA
AGTAAGTCAACAGTCCCATTTATGTTATAAATTCCTCTATCAATAGTGtg
tgtcattatttttctcagggatttttctaataGAAGTTCTAGATTGTGTA
TGTAATTCCATCCTGATATTCAATTATCTCTTATCCAGTTAATTTATTGT
TCAGATTCAGATTTTACAACATTTTACATCAAACTATCCATTCAATTTAC
ATTAGGCTAACCTTTAACactcaaaaatcaaattatttttgtaggaaaaa
gaagaaattcaagATGATCAAGTTTGGGACAAATGTTGATTTATCAGACA
CAAAGAAGTATGTGttcgacaattttttttgaaaaatattgagcaaaaat
gaaattgtcttGAGAATTTTATTACTGCaactttgaattaaaaaaaaaaa
gcttaaaCTTTTTAAATCATTACATCTGGGACAAGGACTTCTGACACAGC
TATTTACTTTTCTTGTCAAGCAGATAAGAAGTTTTGTTATTTCAGATCAT
CTTCCATCGATTCTATTTCAATTTATCTTTAGATGGAAATCCCAGCTTGC
AGAGTTGACAAAGCTTCCATTATTCTGCAAGGTATTTGATTTTCCACCAA
ACAATTTATAATCAATTCCCAAGCAAAATCGTATGTGCCAGTGCGTGCTC
AAACTTTTCATAATTCAAAATTTACTATGTAAAATGACTTTCTGAAATTC
AAAAGGAACAtatcaattttgaatttcaaatctaaaaccttgagaatatt
ttttcattgaatttccTTGATTCCTGTAGTGATAAATAAGCAAAACAGAT
TGTTTTTCCACAACAGGTGGTGTGTGGCAGTAACATGCTATGCCACGTCG
GCCATAACATCCTCGGTATGAACACTGTTCAACTTTACATGAAGATCCCT
GGATGTCGAACTCCAGGtaattatatattttataattcATCAAGCTCCTA
GGTTTCCTCCGCACGGATGTTAAAGATTTTGAGCTTTCATTTACTTGCAT
TAGTTATTTTTGTAATAATAGTTTATGACAGGAAGTAGAATTagtttttt
gttattgtttgttttgattgtcaaCTTTGTGTCATATTCaggtattttat
tatttttaggccATCAAGAAAATAACTGTTTTGCCTCGATCAACATAAAC
ATTGGGCCAGGCGATTGTGAATGGTTTTGTGTTGATAATGATTATTGGGG
AGTAATACACGAGCTGTGTGAAAAGTAGGAATTTCACTTTTAATCTGTAA
TTAAATTTTCTGTCATTAACAGTGTTGCAATCAAGTGCTATTATCTCTCT
TCCTTTGTTCAAATTGATCTCAGGAAAGCAACATTTTCTATCAGTTTTTA
TGACATTGCAGGTTGTTATGAAGTTGTCTATTGCAAatattacttttttg
aaaaagtgaggTTTTCGTTTgtatttaatttgttgttttacggcaTTGTT
TTAATTCATGATCTTATTTATTTTCACGCTTTAGANatttgttgttttac
ggtaTTGTTTTAATTCATGATCTTATTTATTTTCACGCTTTAGACATGGT
GTCAACTTCTTATCAggtttgaaaactttttatttataGATTTAAGTACT
CCTTACAGTAATTATGATCATTGACAATTTGCGTTTGTTATCACTCTTGC
GGTCTCGTACTTTATAGCATAGTACTGTCTCGGTCCAGTCCAATTCTTTG
GCGCAGTTTTCATGtctagttttttaaataacataGAATTACTCTTGTAA
TCTTCTGATGAGAAATATCAACCCAGGCGTTTAAAGCAAATTTAACAACC
CTAACACACATAGCCAGGATTTTTCATGCAAAACGGTTCTTTTTCCCTGA
ATTTAGGTTCTTGGTGGCCCATCCTTACAGAGTTGTATGATGAGGGTGTT
CCTGTCCACAGATTCATTCAAAAACCAGGAGACTTAGTTTGGGTGAACTC
TGGAAATGTCCATTGGGTGCAAGCCATTGtaagaatttcaatttcaattt
ttgaatgaaCTTAAAGATCTGACATTATCAACATTCTTAAATGTAATGAA
TGTATTTCTATTTCAAATGATACACTCTAAGAGCATGaacctttcatgtc
aaaaaagtccTGAAAACCCTGAAAACACTTTGtctgaaacactttttctg
aacctttcatgctttttgggggtgtttttggcaaaaatcatttCCCAGAA
ACACCTGACCTCTCAAGGTGGTGTGTTTTCAGCAATTCCTGTGTTCCTGG
GATTTACATAAATCAACTCTCAATTTTCTCCCTAAAATCCAAGCCAAAAT
GCATTACCTGAAACACCTGCAAGTTTCTGAACCATTCAGTGTTTTCTCTG
GCGTTCAAGGTGTTTTTTAAGAcgattttgaagctcttgcagtgTCCTGT
CGGaaccaatcagataaaaatcgCGTTGTAAATCGGGTTAGAAAATCggt
aaaaaatcgggaaatttacAGTCTGGACTTTTTTAACAGCCAGCTTCAAC
AGGACATTcgatgtttttaaaaacttttaaaactgaACCATTTGTGTTCA
AGAGTGTTTTTAAagacatgaaaggttcaggctctAATACGGCCAGTTTG
AAAAAGTATTGAAGTTTTGATTTCCATTTTGACCCTATGTATTTTTAGGG
CTGGTGTAATAATATTGCTTGGAATGTTGGTCCACTTATACGTAAGTAAA
TATTGTGTTAGAAAAGTTACAATTGTTGTAGTTGTatttagttttaaaaa
caggtaaaaaatGTATTGGAATACTTGAACTtttagatatattttttttg
cattttttggaaGCTTTTAATGTGCTATGATTTTTAATGACTTATTTTTA
TCTTCAGCAAACCAATTCAAATTAGCTGTTGAAAGATATGAGTGGAATAA
ACTGCAAGGTAAAATGCTGTTATTTTANAATTAGCTGTTGAAAGATATGA
GTGGAATAAACTGCAAGGTATAATGCTGTTATTTTATACGACTCATTatg
gaaaaaacaaaatataggAAATCTGATGAATCAATCTCCTAAATtgtttg
cttcatttttctagATTACAAATCAATTGTTCCAATGATAAATCTATCTT
GGAGCTTGGCAAGGAATATTCGAATACCTGAAGGCCAATTAGGTGAACAT
GTGAAGTGAGtcctatttttcatttaaatttttatacatcCAAAGGAATC
AAAGAGTTTCCTGCCCAACAATTTTAGCTTGTACGACAGAATAATTTGCT
TTTTCCTGGTTGTCTCATCAGTATTGCTTATTGCCTTTTTTAAATCACTA
AAGTCTTGATAATTCTGACagattttaaataatttttatttattcacaTA
AACTAGAGTTTGTTTGGAGCGCTCACTACGCTATTGTGTCCGGACATGTG
AAATTCTTAAGGATATGAATATTGAAGTACAATGGCATGGTCGTGAGAAG
AATGAAGCTGCACATTATTGTTCAACATGTGAAGTGAGTAACTTCtatag
aaaatctatttttcatATTGAAGGCTTCAGGTCTCAAACTTGAAAACTAC
CTGTTCATACCAATCATACATTagattttcttcaaatgaaaattaacttt
taTCTTTTAATTATCAACAATCTTCATTGTCTTTTTGCGTCAGGTTGAAG
TGTTCAATATTTTGTTTGTCAAAGAAATGAACAAGAAGTTGATGGTTCAT
TGTCAAGACTGTGCACGAAAAACAAGCGTCAGTTTGGAAGGATTCATTGT
TCTTAATCAGGTATGTTTGCTTGTAAGTTTGACCAAAAGTAGAAAAGTTG
TTATGTAGGTACATTCTACTAATGCAGAAGCAGATCTATGATGAAGATTT
ATTCTAATGATATAGATACCATATTTTTTTCTGTACCTTCCTTTGCCGGA
ATCTATGTTGATCTACTctgtattttaaaaggaaaaaaacacCTTATCGC
CAAAATTTGTCTCTAAAAGATATAAAATTTGTACATGATGTCAGCTTTgt
aattttggagaaaaatctGTGTGTTGATTTGCTCAATATTTTTCATGGAA
CTTTTTTACGTCAGTAAATTCTGTATTTTACAAGGAAAATAAATCTTTTA
AGATTTGctctatattttgaaaaataataagtCTGTGTGTAGGTAGATTT
TGCTCTGTATTTTACAAGGAAAATCTGTTTGTAGAATTAGGGGCcctcca
catagtacgtacacagtgaaggggAGAGAAGAGGACttagcaaaagcgta
cgtcTATTGTTTATATGTAAGCCtttatttctattgttctctgggTACAA
GGGGGAAAGGATTTCCAATATTTGGAAAAATATGGCTGACCCcttatttt
gtattttacaaGGAAAATTTATATCTAGATCTGGGTCTAGATTTGATTTG
TATTTGCAAGGAAATTCTGTAAGTTGAATGAGTTCCTCTGCATTTTGCAT
GAACTGTATGTAGATTtaagtaattttcaaaaaaatcttcataGAATTAT
TTGGTATATTACAGACAAAATCAGTATGTATAATTGctctgtattttcca
aggaagatctggttctgtattttccaaggaaaatttatattctgTATTTT
GCAAGGTAAATGGAATTTTGTGTAGATTTGCTTTGTATTTTGAATGGAAA
ATGTATTACTAATGTTTTACTCTGTATTCTACAAGAAGAATCTGTTTATT
GAATTGTTCTgtatttttaaaaggaaaatctgtaagtaagtttgtttgtt
tgttgtctTTTTGCAAGGAAAATTTTTACGTGGAATTGCTTTGTATTTTG
TAAGGAAATTGGATGTAgattagactagagtctacttataactgaacttt
gctttctgataattttgATGGCAGTAGACTTGGAGCACTTGACAAGGTTg
ctattttgaaagaaaaacactaagaagccaaataaaaataaagctaTTTG
GAgttgaaaattttatcaaaaatcaaaaaccaaCATAAAAAACAGTAATT
TCCAAAATATAATAGATTCTAAGAACTACCTGAGGGGTCACTAAATTGGC
TATCCATATGAAAAAGCTTCTAGTAGGCGCCAGTATTTGTATAGATTTAT
TATGTATTTTGCAAGGAAAACGTGCATGTAGTATTACTCTATATTTCACA
AGGAAAATCTGTATGTTGGAATGTTCTGTAATTTACAAGGAAAATATCTA
TGTAGGATTGCTCTGTAATTTGCAAGGAAGATCTGTATGTAGAATTGCTC
TGTATTTTGCAAGGAAAATCTGTATGCACAATTACTGTGTATTTTGCAAG
GAAAATCTGTATGTAGAATTGCTCTGTAATTTGCAAGGAAAATCTGTATG
TAGAATTGCTCTGTATTTTGCAAGGAAAATCTGTATGTAGAATTGCTCTG
TATTTTGCAAGAAAAATCTGAATGTAGAATTACTGTGTATTTTGCAAGGA
AAATCTGTATGTAGAATTACTCAGTATTTCGCAAGGAAAATCTGTATGCA
CAATTACTCTGTATTTTGCAATTGGAAAATCTGTATGTAGAATTACTCTG
TATTTTGCAAGGAAAATCTGTATGTACAATAACTGTGCATTTAATTTGCA
AGGGAGCTCTGTGTTTAGaattgaaaaaatgtaaaattgcTTTTGGGATG
TTTGCCTTAGttcaaattttgtaaaaaatctttccAGAGAATTGGTTAAG
TATCTTGTAAGgatatgtaaatattttttcatagtgTCCACCTAATCTCt
ctacaggggggggggttaggATTTTTGGCCTAAATAGACCAGGTGGGACC
TTTAACCCCTCTTGACACTTTGATAGTTAACAAAGAAGAAATTTATCTag
atttctttgtattttgcaGGGGAAATATATTTGAATatggtcaaaatcta
tcttGATTTCCTGAAGTGAAGCTTgtttgtttgtatttttgaaataaaat
ttactGATTTAATTCCTTCTCAAAAAAAGTCCTTCTGATAACCTGGTAAT
TTTGAAGGAAACCCTAGCACAGATCTTTGTGTTTCGACGACCTTACATTA
CTCAAGGAAGGTCAAcgtttttgaagggattttttcatatttgtattttt
gaattttcgattttcctttTCAGTATTCCATGGAAGAATTGGAGCAAGTT
TATAACGCATTTTGTGTTAACATGGTGAATGTGAGTACTCCATCCACTTA
TTTCGAAAAAAACTGATCGAAATGATTTCAAGTGTCCTTAGAAGCGCTTT
TTACAACATTTATTTCTTTGCAAAAAATTAATCCCTCATTATTGTCACCT
TCCAAAGGAAAAAAAGTTCCCTTTCCTCCCTTATAATAAATAGCTTCACT
TATTGAGACTGGAGAGATTTGAAGACTGTTGTTTTGAATACCATTTTTGT
TTCTGTCAAGCTATTACGCTATATGAAATATAAGAAAATCGATGTCACTG
AACTTTACTAGCTAGCGTCAATACCTAATGGACATCAGAGTAATAGAAGA
TATTGTTCATGTTTTTTGTCTCCTCCAGGCTGCCAAAGGATCAACCAGCA
CAACTGCAACATCTACAGCTGCTTCAAGTCAGCAACAACCACCACAAGCA
CCGCCCATCACAACAAGTGCTTCTTCATCTTCTGCACCAACGCCCAACCC
TCCACCCCAACCTGTTCCACCGCCACCAGTGGAAGAGAAAACGTGAATGG
GCGCCCTAACGTTCTCAAGTATGGTATTGTAATGTTGATAGTGTTATTTA
TTGGACTCCAAAACTAAATGCAATCTTtcctttattatttcatttagCTT
GAAATTGTAAAAGCTTTTTGATGGATATCCTATTGATATTAATGACGATG
ACTTTAGCAGTTGAAGACGTATTTGAAGCTATTTCATTTTGCCATTTGTG
CTTGAGTCTCCATTTGCACTTGCCAGAAGGCAAACACATTGAATGgcatt
tttttggcttttttttatTGTGAGAGTCTTCGTCTATTGTCCTATATGTC
AAGCAAATTTGCTggcaattttatcaaattatagTATGATAATGAATAGT
GTAATGTAATTTAGTGTATAATATTGAGTATGGTAATAATTATGatgtat
attacatattgtcaCTGGAATCATGAATGGTCTGAATCTATATGGTAGTA
GACACAGATAGATTTCGCATATTTCTCACCAATTATCAGTTTGTTCAGTA
ATTTTGCTGTCTTCAATATTaccccttttcaaaaattttttatcaataat
ctTTATTGCATAGTTAGTGAAATTATCATGATTTTTTTGTAGTTGTGTTT
TTTTAggactttttactttttactatTACTATTATGTGTTCTATTTGATC
TGTCCTTTGTctaatttttatgtttgaaattttatgTCCTTGTCTGATTT
GTTTTCTAAattaaaataaaccagctgcgctggaagctctaGCCGTAAGC
TGAGAAAGATGCAAGGATTAGATAAAATAAACAGGTCGGAAATGGTATGC
AAAAAGGGGATTCATAATATGCATAACTGTTATATTCTTCGGACATACCC
CAAAATTTTCTCCCTATTGCGCGTCATATGAGTGTCACGGGGGCCAAAAT
TAGCacataaagaaaaaaaacgaacTAATTAACTTTAGGGGTGATTTTCC
TAAGGGTAAAATTTGTTTGTGCGAATGGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003935	XLOC_003935	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000073	supercontig	sc0000073:349203..359981 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00946254	0.364873	0	0.0630335	0.514257	0.157822	0.999129	0.258424	0.000598546	0.000496006	2.22853	0.000220421	2.72211e-06	1.90268e-05	0.000178881	6.89416e-06	0.00116966	0.677655	4.12945e-06	8.57335e-06	0.00313547	1.07178	2.6222e-05	0.0996645	1.53569	0.0570117	0.00303555	0.010971	0.653206	0.751955

Blast

[Close]

BLAST of TCONS_00007037 vs. Swiss-Prot (Human)
Match: KDM6A (Lysine-specific demethylase 6A OS=Homo sapiens GN=KDM6A PE=1 SV=2)

HSP 1 Score: 560.066 bits (1442), Expect = 1.507e-175
Identity = 274/464 (59.05%), Postives = 339/464 (73.06%), Query Frame = 3

Query: 1140 QLYPPTPSITVQDRREAMSPALRNFCYDKRNPVTVVKGLCKALKLDLSLFTTRRLVEQNPDHSIEIRHQRQQRTDENLDEEGKITVWRCRSSKSKMTIAKYAQYQASTYQDSL--QSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGTNVDLSDTKKWKSQLAELTKLPLFCKIVFPQQVVCGSNMLCHVGHNILGMNTVQLYMKIPGCRTPGHQENNCFASININIGPGDCEWFCVDNDYWGVIHELCEKHGVNFLSGSWWPILTELYDEGVPVHRFIQKPGDLVWVNSGNVHWVQAIGWCNNIAWNVGPLIPNQFKLAVERYEWNKLQDYKSIVPMINLSWSLARNIRIPEGQLGEHVKVCLERSLRYCVRTCEILKDMNIEVQWHGREKNEAAHYCSTCEVEVFNILFV-KEMN--KKLMVHCQDCARKTSVSLEGFIVLNQYSMEELEQVYNAFCV 2516
            +L PPTPSI ++++R+A  P L  FC +  NPVTV++GL  ALKLDL LF+T+ LVE N +H +E+R Q  Q  DEN D  G   +W C S++S  TIAKYAQYQAS++Q+SL  ++E     ++  + E    +    ++K  FK IKFGTN+DLSD KKWK QL ELTKLP F +      VV   N+L HVGH ILGMNTVQLYMK+PG RTPGHQENN F S+NINIGPGDCEWF V   YWGV+++ CEK+ +NFL GSWWP L +LY+  VPV+RFIQ+PGDLVW+N+G VHWVQAIGWCNNIAWNVGPL   Q+KLAVERYEWNKLQ  KSIVPM++LSW++ARNI++ + +L E +K CL R+L+ C    E L     E+ WHGR K E AHYCS CEVEVF++LFV  E N  K  +VHCQDCARKTS +LE F+VL QY ME+L QVY+ F +
Sbjct:  935 KLNPPTPSIYLENKRDAFFPPLHQFCTNPNNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWHCESNRSHTTIAKYAQYQASSFQESLREENEKRSHHKDHSDSESTSSDNSGRRRKGPFKTIKFGTNIDLSDDKKWKLQLHELTKLPAFVR------VVSAGNLLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLNDFCEKNNLNFLMGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKLAVERYEWNKLQSVKSIVPMVHLSWNMARNIKVSDPKLFEMIKYCLLRTLKQCQTLREALIAAGKEIIWHGRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQYKMEDLMQVYDQFTL 1392

HSP 2 Score: 92.0485 bits (227), Expect = 1.426e-18
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 3

Query:    3 LQAYVCAVQLDSNHVAAWTDLGVLYETAGRFEDSMICYKNALKACGTSNI-GLETRMRILKEKMAS-PMVAEVNKN--LPGIEAAWKLPIPAELTAR 281
            LQAY+CAVQLD  H AAW DLG LYE+  + +D++ CY NA ++   SN   L  R++ L+ ++ + P  +  NK   LP IE AW LPIPAELT+R
Sbjct:  338 LQAYICAVQLDHGHAAAWMDLGTLYESCNQPQDAIKCYLNATRSKSCSNTSALAARIKYLQAQLCNLPQGSLQNKTKLLPSIEEAWSLPIPAELTSR 434

The following BLAST results are available for this feature:

BLAST of TCONS_00007037 vs. Swiss-Prot (Human)

BLAST of TCONS_00007037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KDM6A	1.507e-175	59.05	Lysine-specific demethylase 6A OS=Homo sapiens GN=...	[more]

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TCONS_00007037 (transcript) - C. hemisphaerica