TCONS_00007032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007032
Unique NameTCONS_00007032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007032 ID=TCONS_00007032|Name=TCONS_00007032|organism=Clytia hemisphaerica|type=transcript|length=1042bp
CAAAGAGTTGCAGCACGGGAAGATTCGGCAATAAGGAATGGGCAGCTGGC
TTAGTTTTGAGAAAGACCATGAATCAGTGGAGAATGTCAAGAAATATTGC
GAATCGGTGGTTTTTGTGCGTTTCTATGGGCAGACAAACAGTATGAAATC
GGATGAAATGGACCACGAAGAAGTAGACGCAGGAGGAAAAGTGAAATCAA
AACTTGGAATAATTCTTCACGAACTTGACCGTGAAATCAAGAAGGCTCCA
ACAATTGCCGAATTTGAAATAACTGAACCGATGAAAGAGATGCTGAAGAA
GTTGGCAGCTATTCGAGTTTGTACTGAAGATTGTGAGGCGGAAGAAGATT
GCTTTAAAAGACTTTTGGAGGACGCTGAGCAGTTCGTGAAGATTTATCGC
AAGAGAGGACAAATATCAGAAAGTTGCGATGACGACCACGATTTTTATTG
GGGAACACGTCAACAGATGTTGTTTGGCAAAGTCATCGTCGATTGGTTGC
CTGATCACATTGAAAATCAATCTCGACCGATGGACCCGATTTTCGGAGTT
TTGTTCAATCCAACAGGAGGGCTTGTTGGACCAGGAGATCTACAATGGAT
GCATAATGCACTTTACGACGATTTGGGACCTTTCGCATATCACTCAGCTG
TTCATGATGCTTTCGGatatttgaaaacaaaccatAATTCTGGTCCTGGA
TATTGTTATTTGAACAAAGGAATCTTTGGTGATTGGAGTCCATTTGGTGG
ACAATTATCTGGCTTGAGGTACTGGAAACAGGTTTTAGCTGTAGCGAAAC
CAGACGAAGCCAAGCTGGAGCGATTTGTCCTTAGATaaacttttataaaa
tattttgcagagGAAAGTttgataataaataataaacgTTGAGCCTTGGA
TgggctttttgttttgaactgtttgtaaaaaatcttgaaGTTTTTGTAAA
TTGGGGAATTCTGATATTTATATAATGTTGTAAATTACTGATGATTTAat
atttctttgtatttttgctCACGTTTTAAACAGTATGTCAAT
Run BLAST on NCBI

transcript from alignment at sc0000073:334412..336576+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007032 ID=TCONS_00007032|Name=TCONS_00007032|organism=Clytia hemisphaerica|type=transcript|length=2165bp|location=Sequence derived from alignment at sc0000073:334412..336576+ (Clytia hemisphaerica)
CAAAGAGTTGCAGCACGGGAAGGTTTTGCCGAAGTTTCTCGAGCGTTTCA
TGATTATAGAAAAACCTGTTGCCATTGATAGATACCAATATATAAAATAC
ATCTCATGGTTACTGTCGTaaattagcgagtttatgttattataaattaa
aaatttgagtggtgaaatgtcaaatttttcatcaaaagaaTCTTCTTCTT
TTAGATTCGGCAATAAGGAATGGGCAGCTGGCTTAGTTTTGAGAAAGACC
ATGAATCAGTGGAGAATGTCAAGAAATATTGCGAATCGGTGGTTTTTGTG
CGTTTCTATGGGCAGACAAACAGTATGGTAAGAATATTGGAGTATTCAGT
GACCTGAAAATATCTTACTTTGACAGGGATGCCTGGAGTCTGCGTGACGC
ACGTTCCATCATAAAGGTTTTGGATGCAAACTGTCGAAGGGAGTTTGCAG
TCGATACTCTACCATTGCATCATGTTTGCGATTTTGCGATTGCTGATATT
ATCGGCAGTAAATTCTTTTTCCGCGTTCACTGTCATTAACAGACGATTAA
ATCCTTTATAACGATGATGAATATGAAAGGTTACATTTTTAGAAATCGGA
TGAAATGGACCACGAAGAAGTAGACGCAGGAGGAAAAGTGAAATCAAAAC
TTGGAATAATTCTTCACGAACTTGACCGTGAAATCAAGAAGGCTCCAACA
ATTGCCGAATTTGAAATAACTGAACCGATGAAAGAGATGCTGAAGAAGTT
GGCAGCTATTCGAGTTTGTACTGAAGATTGTGAGGCGGAAGAAGATTGCT
TTAAAAGACTTTTGGAGGACGCTGAGCAGTTCGTGAAGATTTATCGCAAG
AGAGGACGTTAGTTTAAAAATAAGTCTCAGAGTTATTCTAACTCTATATT
TGCAATATATAAAACTTACTGATCAAGAAAAACCTTTGTAGCTTTGACAA
ATaccttttttgaagattttgaaccAAATTTAAGATTATAAAATCACTAG
AATAACTGAGTCGATTTAGTTGAAATTTCGCCGCATTCATGAATGCTTTA
ATTTCGTTTTTCAGTcgtaaatgatgaaaaaaaaaatttcatcctaAAAT
AATTTATCAGGAAATTCCTTGAAACCTTATGATGTTCGATATTTGTAGAA
ATATCAGAAAGTTGCGATGACGACCACGATTTTTATTGGGGAACACGTCA
ACAGATGTTGTTTGGCAAAGTCATCGTCGATTGGTTGCCTGATCACATTG
AAAATCAATCTCGACCGATGGACCCGATTTTCGGAGTTTTGTTCAATCCA
ACAGGAGGTAGAATTTCAACTATTTTTCGTCAGCAGCTAGACTAAAGAAA
AGTAGGCTATTCCAGAAAGAGATTGGTACCTCCTGTGTGTTGAGGGCACA
GATTtgtaaaacccgaagggctagatgtcgtgctttaagctcttccaagc
aaaacaaaagtgaacatcgcaaaaaatattactgctattgttttcgattA
TATCTGATtatatctttcttttcttcatcCTCCAACTTTTTTTATCCAAT
AGATTTCCACTgctaaatatcttttcaaagaGCCCATAACCAATATCTAA
GATTTTTTACTCAATTCTATCAAATCTTACAGCCTTTCGTTTTGTTTACG
CTTCAGATAAAAATGTGTTCGTATTTATTGATTATGTTATAGGGCTTGTT
GGACCAGGAGATCTACAATGGATGCATAATGCACTTTACGACGATTTGGG
ACCTTTCGCATATCACTCAGCTGTTCATGATGCTTTCGGatatttgaaaa
caaaccatAATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATCTTT
GGTGATTGGAGTCCATTTGGTGGACAATTATCTGGCTTGAGGTACTGGAA
ACAGGTTTTAGCTGTAGCGAAACCAGACGAAGCCAAGCTGGAGCGATTTG
TCCTTAGATaaacttttataaaatattttgcagagGAAAGTttgataata
aataataaacgTTGAGCCTTGGATgggctttttgttttgaactgtttgta
aaaaatcttgaaGTTTTTGTAAATTGGGGAATTCTGATATTTATATAATG
TTGTAAATTACTGATGATTTAatatttctttgtatttttgctCACGTTTT
AAACAGTATGTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003934XLOC_003934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007032-exon-sc0000073-1491911889:334412..334433TCONS_00007032-exon-sc0000073-1491911889:334412..334433Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1510915933:334412..334433TCONS_00007032-exon-sc0000073-1510915933:334412..334433Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1575043694:334412..334433TCONS_00007032-exon-sc0000073-1575043694:334412..334433Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1491911889:334616..334738TCONS_00007032-exon-sc0000073-1491911889:334616..334738Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1510915933:334616..334738TCONS_00007032-exon-sc0000073-1510915933:334616..334738Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1575043694:334616..334738TCONS_00007032-exon-sc0000073-1575043694:334616..334738Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1491911889:335004..335268TCONS_00007032-exon-sc0000073-1491911889:335004..335268Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1510915933:335004..335268TCONS_00007032-exon-sc0000073-1510915933:335004..335268Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1575043694:335004..335268TCONS_00007032-exon-sc0000073-1575043694:335004..335268Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1491911889:335560..335718TCONS_00007032-exon-sc0000073-1491911889:335560..335718Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1510915933:335560..335718TCONS_00007032-exon-sc0000073-1510915933:335560..335718Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1575043694:335560..335718TCONS_00007032-exon-sc0000073-1575043694:335560..335718Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1491911889:336104..336576TCONS_00007032-exon-sc0000073-1491911889:336104..336576Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1510915933:336104..336576TCONS_00007032-exon-sc0000073-1510915933:336104..336576Clytia hemisphaericaexon
TCONS_00007032-exon-sc0000073-1575043694:336104..336576TCONS_00007032-exon-sc0000073-1575043694:336104..336576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:334412..336576 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.050799	0	0	0.090772	0.109512	0.0515557	0	0	0	0.0567295	0	0	0	0	205.695	317.5	0	0.0478174	38.5999	29.5967	2.18368	5.10145	22.0703	1.81114e-05	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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