TCONS_00007030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007030
Unique NameTCONS_00007030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1157

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007030 ID=TCONS_00007030|Name=TCONS_00007030|organism=Clytia hemisphaerica|type=transcript|length=1157bp
Ggaacggttttagtgggataaagcggaaagaaatgcccgcgcggcaattg
gcgaccacagtcgaaaaggtgtatactaTTAGTGGTATTAATGGTATTAC
CAAGATGACTATCGCTCTATATTCAATCGAGAAGGGTATTCGGCAATAAG
GAATGGGCAGCTGGCTTAGTTTTGAGAAAGACCATGAATCAGTGGAGAAT
GTCAAGAAATATTGCGAATCGGTGGTTTTTGTGCGTTTCTATGGGCAGAC
AAACAGTATGAAATCGGATGAAATGGACCACGAAGAAGTAGACGCAGGAG
GAAAAGTGAAATCAAAACTTGGAATAATTCTTCACGAACTTGACCGTGAA
ATCAAGAAGGCTCCAACAATTGCCGAATTTGAAATAACTGAACCGATGAA
AGAGATGCTGAAGAAGTTGGCAGCTATTCGAGTTTGTACTGAAGATTGTG
AGGCGGAAGAAGATTGCTTTAAAAGACTTTTGGAGGACGCTGAGCAGTTC
GTGAAGATTTATCGCAAGAGAGGACAAATATCAGAAAGTTGCGATGACGA
CCACGATTTTTATTGGGGAACACGTCAACAGATGTTGTTTGGCAAAGTCA
TCGTCGATTGGTTGCCTGATCACATTGAAAATCAATCTCGACCGATGGAC
CCGATTTTCGGAGTTTTGTTCAATCCAACAGGAGGGCTTGTTGGACCAGG
AGATCTACAATGGATGCATAATGCACTTTACGACGATTTGGGACCTTTCG
CATATCACTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaaccat
AATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATCTTTGGTGATTG
GAGTCCATTTGGTGGACAATTATCTGGCTTGAGGTACTGGAAACAGGTTT
TAGCTGTAGCGAAACCAGACGAAGCCAAGCTGGAGCGATTTGTCCTTAGA
TaaacttttataaaatattttgcagagGAAAGTttgataataaataataa
acgTTGAGCCTTGGATgggctttttgttttgaactgtttgtaaaaaatct
tgaaGTTTTTGTAAATTGGGGAATTCTGATATTTATATAATGTTGTAAAT
TACTGATGATTTAatatttctttgtatttttgctCACGTTTTAAACAGTA
TGTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00007030-protein

>TCONS_00007030-protein ID=TCONS_00007030-protein|Name=TCONS_00007030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MGSWLSFEKDHESVENVKKYCESVVFVRFYGQTNSMKSDEMDHEEVDAGG
KVKSKLGIILHELDREIKKAPTIAEFEITEPMKEMLKKLAAIRVCTEDCE
AEEDCFKRLLEDAEQFVKIYRKRGQISESCDDDHDFYWGTRQQMLFGKVI
VDWLPDHIENQSRPMDPIFGVLFNPTGGLVGPGDLQWMHNALYDDLGPFA
YHSAVHDAFGYLKTNHNSGPGYCYLNKGIFGDWSPFGGQLSGLRYWKQVL
AVAKPDEAKLERFVLR
Run BLAST on NCBI

transcript from alignment at sc0000073:333934..336576+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007030 ID=TCONS_00007030|Name=TCONS_00007030|organism=Clytia hemisphaerica|type=transcript|length=2643bp|location=Sequence derived from alignment at sc0000073:333934..336576+ (Clytia hemisphaerica)
Ggaacggttttagtgggataaagcggaaagaaatgcccgcgcggcaattg
gcgaccacagtcgaaaaggtgtatactaTTAGTGGTATTAATGGTATTAC
CAAGATGACTATCGCTCTATATTCAATCGAGAAGGGTGTAAGCAAAAGCT
TTAAATTGAACTTTTGTGATTTTTCGTGAAACACGTATACATATATCCTT
TCAAAATGTTACTTATCTCTCAATTCAATCAATTACTCATATCACTTTAA
AGTCACTTTCTTTTGAATTTCTATATAAATATTCAACCAGAATTATACGT
TGATAATTCAAGTCAATAAAGAATTAGAcacgaaaatttcatatttcaat
tataCGTTATGATATAACATACCCACAGAAAATTTgtgacttttgaaatt
tttctctcaaaaaggGAGTGCCTCGTATCCCTCGTATCTTTATAATGTTA
TGATTTCTAATGCAGATGGAGCTCAGTGCAAAGAGTTGCAGCACGGGAAG
GTTTTGCCGAAGTTTCTCGAGCGTTTCATGATTATAGAAAAACCTGTTGC
CATTGATAGATACCAATATATAAAATACATCTCATGGTTACTGTCGTaaa
ttagcgagtttatgttattataaattaaaaatttgagtggtgaaatgtca
aatttttcatcaaaagaaTCTTCTTCTTTTAGATTCGGCAATAAGGAATG
GGCAGCTGGCTTAGTTTTGAGAAAGACCATGAATCAGTGGAGAATGTCAA
GAAATATTGCGAATCGGTGGTTTTTGTGCGTTTCTATGGGCAGACAAACA
GTATGGTAAGAATATTGGAGTATTCAGTGACCTGAAAATATCTTACTTTG
ACAGGGATGCCTGGAGTCTGCGTGACGCACGTTCCATCATAAAGGTTTTG
GATGCAAACTGTCGAAGGGAGTTTGCAGTCGATACTCTACCATTGCATCA
TGTTTGCGATTTTGCGATTGCTGATATTATCGGCAGTAAATTCTTTTTCC
GCGTTCACTGTCATTAACAGACGATTAAATCCTTTATAACGATGATGAAT
ATGAAAGGTTACATTTTTAGAAATCGGATGAAATGGACCACGAAGAAGTA
GACGCAGGAGGAAAAGTGAAATCAAAACTTGGAATAATTCTTCACGAACT
TGACCGTGAAATCAAGAAGGCTCCAACAATTGCCGAATTTGAAATAACTG
AACCGATGAAAGAGATGCTGAAGAAGTTGGCAGCTATTCGAGTTTGTACT
GAAGATTGTGAGGCGGAAGAAGATTGCTTTAAAAGACTTTTGGAGGACGC
TGAGCAGTTCGTGAAGATTTATCGCAAGAGAGGACGTTAGTTTAAAAATA
AGTCTCAGAGTTATTCTAACTCTATATTTGCAATATATAAAACTTACTGA
TCAAGAAAAACCTTTGTAGCTTTGACAAATaccttttttgaagattttga
accAAATTTAAGATTATAAAATCACTAGAATAACTGAGTCGATTTAGTTG
AAATTTCGCCGCATTCATGAATGCTTTAATTTCGTTTTTCAGTcgtaaat
gatgaaaaaaaaaatttcatcctaAAATAATTTATCAGGAAATTCCTTGA
AACCTTATGATGTTCGATATTTGTAGAAATATCAGAAAGTTGCGATGACG
ACCACGATTTTTATTGGGGAACACGTCAACAGATGTTGTTTGGCAAAGTC
ATCGTCGATTGGTTGCCTGATCACATTGAAAATCAATCTCGACCGATGGA
CCCGATTTTCGGAGTTTTGTTCAATCCAACAGGAGGTAGAATTTCAACTA
TTTTTCGTCAGCAGCTAGACTAAAGAAAAGTAGGCTATTCCAGAAAGAGA
TTGGTACCTCCTGTGTGTTGAGGGCACAGATTtgtaaaacccgaagggct
agatgtcgtgctttaagctcttccaagcaaaacaaaagtgaacatcgcaa
aaaatattactgctattgttttcgattATATCTGATtatatctttctttt
cttcatcCTCCAACTTTTTTTATCCAATAGATTTCCACTgctaaatatct
tttcaaagaGCCCATAACCAATATCTAAGATTTTTTACTCAATTCTATCA
AATCTTACAGCCTTTCGTTTTGTTTACGCTTCAGATAAAAATGTGTTCGT
ATTTATTGATTATGTTATAGGGCTTGTTGGACCAGGAGATCTACAATGGA
TGCATAATGCACTTTACGACGATTTGGGACCTTTCGCATATCACTCAGCT
GTTCATGATGCTTTCGGatatttgaaaacaaaccatAATTCTGGTCCTGG
ATATTGTTATTTGAACAAAGGAATCTTTGGTGATTGGAGTCCATTTGGTG
GACAATTATCTGGCTTGAGGTACTGGAAACAGGTTTTAGCTGTAGCGAAA
CCAGACGAAGCCAAGCTGGAGCGATTTGTCCTTAGATaaacttttataaa
atattttgcagagGAAAGTttgataataaataataaacgTTGAGCCTTGG
ATgggctttttgttttgaactgtttgtaaaaaatcttgaaGTTTTTGTAA
ATTGGGGAATTCTGATATTTATATAATGTTGTAAATTACTGATGATTTAa
tatttctttgtatttttgctCACGTTTTAAACAGTATGTCAAT

Coding sequence (CDS) from alignment at sc0000073:333934..336576+

>TCONS_00007030 ID=TCONS_00007030|Name=TCONS_00007030|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at sc0000073:333934..336576+ (Clytia hemisphaerica)
ATGGGCAGCTGGCTTAGTTTTGAGAAAGACCATGAATCAGTGGAGAATGT
CAAGAAATATTGCGAATCGGTGGTTTTTGTGCGTTTCTATGGGCAGACAA
ACAGTATGAAATCGGATGAAATGGACCACGAAGAAGTAGACGCAGGAGGA
AAAGTGAAATCAAAACTTGGAATAATTCTTCACGAACTTGACCGTGAAAT
CAAGAAGGCTCCAACAATTGCCGAATTTGAAATAACTGAACCGATGAAAG
AGATGCTGAAGAAGTTGGCAGCTATTCGAGTTTGTACTGAAGATTGTGAG
GCGGAAGAAGATTGCTTTAAAAGACTTTTGGAGGACGCTGAGCAGTTCGT
GAAGATTTATCGCAAGAGAGGACAAATATCAGAAAGTTGCGATGACGACC
ACGATTTTTATTGGGGAACACGTCAACAGATGTTGTTTGGCAAAGTCATC
GTCGATTGGTTGCCTGATCACATTGAAAATCAATCTCGACCGATGGACCC
GATTTTCGGAGTTTTGTTCAATCCAACAGGAGGGCTTGTTGGACCAGGAG
ATCTACAATGGATGCATAATGCACTTTACGACGATTTGGGACCTTTCGCA
TATCACTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaaccatAA
TTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATCTTTGGTGATTGGA
GTCCATTTGGTGGACAATTATCTGGCTTGAGGTACTGGAAACAGGTTTTA
GCTGTAGCGAAACCAGACGAAGCCAAGCTGGAGCGATTTGTCCTTAGATa
aATGGGCAGCTGGCTTAGTTTTGAGAAAGACCATGAATCAGTGGAGAATG
TCAAGAAATATTGCGAATCGGTGGTTTTTGTGCGTTTCTATGGGCAGACA
AACAGTATGAAATCGGATGAAATGGACCACGAAGAAGTAGACGCAGGAGG
AAAAGTGAAATCAAAACTTGGAATAATTCTTCACGAACTTGACCGTGAAA
TCAAGAAGGCTCCAACAATTGCCGAATTTGAAATAACTGAACCGATGAAA
GAGATGCTGAAGAAGTTGGCAGCTATTCGAGTTTGTACTGAAGATTGTGA
GGCGGAAGAAGATTGCTTTAAAAGACTTTTGGAGGACGCTGAGCAGTTCG
TGAAGATTTATCGCAAGAGAGGACAAATATCAGAAAGTTGCGATGACGAC
CACGATTTTTATTGGGGAACACGTCAACAGATGTTGTTTGGCAAAGTCAT
CGTCGATTGGTTGCCTGATCACATTGAAAATCAATCTCGACCGATGGACC
CGATTTTCGGAGTTTTGTTCAATCCAACAGGAGGGCTTGTTGGACCAGGA
GATCTACAATGGATGCATAATGCACTTTACGACGATTTGGGACCTTTCGC
ATATCACTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaaccatA
ATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATCTTTGGTGATTGG
AGTCCATTTGGTGGACAATTATCTGGCTTGAGGTACTGGAAACAGGTTTT
AGCTGTAGCGAAACCAGACGAAGCCAAGCTGGAGCGATTTGTCCTTAGAT
aaATGGGCAGCTGGCTTAGTTTTGAGAAAGACCATGAATCAGTGGAGAAT
GTCAAGAAATATTGCGAATCGGTGGTTTTTGTGCGTTTCTATGGGCAGAC
AAACAGTATGAAATCGGATGAAATGGACCACGAAGAAGTAGACGCAGGAG
GAAAAGTGAAATCAAAACTTGGAATAATTCTTCACGAACTTGACCGTGAA
ATCAAGAAGGCTCCAACAATTGCCGAATTTGAAATAACTGAACCGATGAA
AGAGATGCTGAAGAAGTTGGCAGCTATTCGAGTTTGTACTGAAGATTGTG
AGGCGGAAGAAGATTGCTTTAAAAGACTTTTGGAGGACGCTGAGCAGTTC
GTGAAGATTTATCGCAAGAGAGGACAAATATCAGAAAGTTGCGATGACGA
CCACGATTTTTATTGGGGAACACGTCAACAGATGTTGTTTGGCAAAGTCA
TCGTCGATTGGTTGCCTGATCACATTGAAAATCAATCTCGACCGATGGAC
CCGATTTTCGGAGTTTTGTTCAATCCAACAGGAGGGCTTGTTGGACCAGG
AGATCTACAATGGATGCATAATGCACTTTACGACGATTTGGGACCTTTCG
CATATCACTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaaccat
AATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATCTTTGGTGATTG
GAGTCCATTTGGTGGACAATTATCTGGCTTGAGGTACTGGAAACAGGTTT
TAGCTGTAGCGAAACCAGACGAAGCCAAGCTGGAGCGATTTGTCCTTAGA
TaaATGGGCAGCTGGCTTAGTTTTGAGAAAGACCATGAATCAGTGGAGAA
TGTCAAGAAATATTGCGAATCGGTGGTTTTTGTGCGTTTCTATGGGCAGA
CAAACAGTATGAAATCGGATGAAATGGACCACGAAGAAGTAGACGCAGGA
GGAAAAGTGAAATCAAAACTTGGAATAATTCTTCACGAACTTGACCGTGA
AATCAAGAAGGCTCCAACAATTGCCGAATTTGAAATAACTGAACCGATGA
AAGAGATGCTGAAGAAGTTGGCAGCTATTCGAGTTTGTACTGAAGATTGT
GAGGCGGAAGAAGATTGCTTTAAAAGACTTTTGGAGGACGCTGAGCAGTT
CGTGAAGATTTATCGCAAGAGAGGACAAATATCAGAAAGTTGCGATGACG
ACCACGATTTTTATTGGGGAACACGTCAACAGATGTTGTTTGGCAAAGTC
ATCGTCGATTGGTTGCCTGATCACATTGAAAATCAATCTCGACCGATGGA
CCCGATTTTCGGAGTTTTGTTCAATCCAACAGGAGGGCTTGTTGGACCAG
GAGATCTACAATGGATGCATAATGCACTTTACGACGATTTGGGACCTTTC
GCATATCACTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaacca
tAATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATCTTTGGTGATT
GGAGTCCATTTGGTGGACAATTATCTGGCTTGAGGTACTGGAAACAGGTT
TTAGCTGTAGCGAAACCAGACGAAGCCAAGCTGGAGCGATTTGTCCTTAG
ATaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003934XLOC_003934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007030-exon-sc0000073-1491911889:333934..334070TCONS_00007030-exon-sc0000073-1491911889:333934..334070Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1510915933:333934..334070TCONS_00007030-exon-sc0000073-1510915933:333934..334070Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1575043694:333934..334070TCONS_00007030-exon-sc0000073-1575043694:333934..334070Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1491911889:334616..334738TCONS_00007030-exon-sc0000073-1491911889:334616..334738Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1510915933:334616..334738TCONS_00007030-exon-sc0000073-1510915933:334616..334738Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1575043694:334616..334738TCONS_00007030-exon-sc0000073-1575043694:334616..334738Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1491911889:335004..335268TCONS_00007030-exon-sc0000073-1491911889:335004..335268Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1510915933:335004..335268TCONS_00007030-exon-sc0000073-1510915933:335004..335268Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1575043694:335004..335268TCONS_00007030-exon-sc0000073-1575043694:335004..335268Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1491911889:335560..335718TCONS_00007030-exon-sc0000073-1491911889:335560..335718Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1510915933:335560..335718TCONS_00007030-exon-sc0000073-1510915933:335560..335718Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1575043694:335560..335718TCONS_00007030-exon-sc0000073-1575043694:335560..335718Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1491911889:336104..336576TCONS_00007030-exon-sc0000073-1491911889:336104..336576Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1510915933:336104..336576TCONS_00007030-exon-sc0000073-1510915933:336104..336576Clytia hemisphaericaexon
TCONS_00007030-exon-sc0000073-1575043694:336104..336576TCONS_00007030-exon-sc0000073-1575043694:336104..336576Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007030-proteinTCONS_00007030-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:333934..336576 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.13683	24.7599	37.2152	0	0	0.954862	1.4073	0	0	43.4225	16.521	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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