|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007014 ID=TCONS_00007014|Name=TCONS_00007014|organism=Clytia hemisphaerica|type=transcript|length=2136bpRun BLAST on NCBI protein sequence of TCONS_00007014-protein >TCONS_00007014-protein ID=TCONS_00007014-protein|Name=TCONS_00007014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp MAATVKDEKPSVVDNFDALFKAVSNGHLASLKSILENDFSVQAFRNLSSTRun BLAST on NCBI transcript from alignment at sc0000073:120658..125083+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007014 ID=TCONS_00007014|Name=TCONS_00007014|organism=Clytia hemisphaerica|type=transcript|length=4426bp|location=Sequence derived from alignment at sc0000073:120658..125083+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:120658..125083+ >TCONS_00007014 ID=TCONS_00007014|Name=TCONS_00007014|organism=Clytia hemisphaerica|type=CDS|length=4653bp|location=Sequence derived from alignment at sc0000073:120658..125083+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007014 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 5.785e-27 Identity = 92/272 (33.82%), Postives = 137/272 (50.37%), Query Frame = 1
Query: 400 KDEKPS--VVDNFDALFKAVSNGHLASLKSILENDFSVQAFRNLSSTLLHQAASNSQSHILEYLVQHGAYVDGANAQQMTALHVSSRVGNVDSVRVLLENGADINDVDYDNRSPLYFSVYDGHLECVKYLLENPKLNINIHRKGGWTYLHEAARFGHFE-CLKLLIKTPGMNLMSRTDDAHWTPGHMAASSGHYDCLALLIENKIDINAGGGPHHSSTLLHEASHGGHKDIVKLLLEKGANP--SLYSGHNLPHHIACRRGYTEVLEEYFQF 1200
K KP+ ++ F L A H+ ++ +L+ S+ A T LH A+ I++ L+Q GA + +N + T LH+++R G+ + + LL+N A +N D+++PL+ + GH VK LLEN N N+ G T LH AAR GH E L LL K M++ +TP H+AA G LL+E NA G + T LH A H + DIVKLLL +G +P ++G+ P HIA ++ EV Q+
Sbjct: 360 KGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG---FTPLHVAAKYGKVRVAELLLERDAHPNAAG--KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLLQY 624 HSP 2 Score: 108.227 bits (269), Expect = 6.027e-24 Identity = 81/255 (31.76%), Postives = 127/255 (49.80%), Query Frame = 1
Query: 424 DNFDALFKAVSNGHLASLKSILENDFSVQAFRNLSSTLLHQAASNSQSHILEYLVQHGAYVDGANAQQMTALHVSSRVGNVDSVRVLLENGADINDVDYDNRSPLYFSVYDGHLECVKYLLENPKLNINIHRKGGWTYLHEAARFGHFECLKLLIKTPGMNLMSRTDDAHWTPGHMAASSGHYDCLALLIENKIDINAGGGPHHSSTLLHEASHGGHKDIVKLLLEKGANPSLYS--GHNLPHHIACRRGYTEVL 1182
D L A NGH+ + +L++ +QA + +H AA + L+Q+ A +D +T LHV++ G+ +VLL+ GA N + +PL+ + H+ ++ LL+ +I+ + G T LH A+ GH +K L++ +S TP HMAA +GH + L++NK +NA T LH A+ GH ++VKLLLE ANP+L + GH P HIA R G+ E +
Sbjct: 271 DELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKT-GASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE--TPLHMAARAGHTEVAKYLLQNKAKVNAKA--KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETV 519 HSP 3 Score: 103.219 bits (256), Expect = 2.178e-22 Identity = 127/480 (26.46%), Postives = 205/480 (42.71%), Query Frame = 1
Query: 436 ALFKAVSNGHLASLKSILENDFSVQAFRNLSSTLLHQAASNSQSHILEYLVQHGAYVDGANAQQMTALHVSSRVGNVDSVRVLLENGADINDVDYDNRSPLYFSVYDGHLECVKYLLENPKLNINIHRKGGWTYLHEAARFGHFECLKLLIKTPGMNLMSRTDDA---HWTPGHMAASSGHYDCLALLIENKIDINA----GGGPHHSS---------------------------TLLHEASHGGHKDIVKLLLEKGANPSLYSGH-NLPHHIACRRGYTEVLEEYFQFFTKTPKHGRLIDAFTNVDPVTNALSYQNSLHLVSXXXXXXXXXXXXXXXA-KHLPNGMHMYPVMLAACKMHIDCLKILLREIKNTS--------------------IGHEVLQRDGHQSA-----LHHLCIKTYKTNNKSIACACLLLNSGMINIDQYDEDWNIPTPLYLAGRNGAVGLVQYLINMGADA 1692
AL A N + +L+ND + T LH AA ++ + L+ GA V+ +T LH++SR GNV VR+LL+ GA I D +PL+ + +GH+ + LL++ I K G + +H AA+ H +C++LL++ + DD H TP H+AA GH+ +L++ N+ G P H + T LH AS GH IVK LL++GA+P++ + P H+A R G+TEV + Q K ++A D Q LH + G+ ++LLL+ A +L P+ +AA + H++ + LL + + + + +L+RD H +A L L + + N + LLL G + WN TPL++A + V + + L+ G A
Sbjct: 176 ALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDH-GAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQ-----YDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-------VNAKAKDD--------QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN---LDIVKLLLPRGG---SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 628 HSP 4 Score: 99.7525 bits (247), Expect = 2.676e-21 Identity = 85/296 (28.72%), Postives = 134/296 (45.27%), Query Frame = 1
Query: 460 GHLASLKSILENDFSVQAFRNLSSTLLHQAASNSQSHILEYLVQHGAYVDGANAQQMTALHVSSRVGNVDSVRVLLENGADINDVDYDNRSPLYFSVYDGHLECVKYLLENPKLNINIHRKGGWTYLHEAARFGHFECLKLLIK------TPGMN-------------------LMSRTDDAH------WTPGHMAASSGHYDCLALLIENKIDINAGGGPHHSSTLLHEASHGGHKDIVKLLLEKGANPSLYSGHNL-PHHIACRRGYTEVLEEYFQFFTKTPKHGRLIDAFTNV 1251
GHL +K++L+ S T LH AA + + +YL+Q+ A V+ T LH ++R+G+ + V++LLEN A+ N +PL+ + +GH+E V LLE + +K G+T LH AA++G +LL++ G N L+ R H +TP H+AA + L++ NA T LH A+ GH ++V LLL K AN +L + L P H+ + G+ V + KHG ++DA T +
Sbjct: 415 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES--VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI-------KHGVMVDATTRM 700 HSP 5 Score: 98.9821 bits (245), Expect = 4.924e-21 Identity = 79/253 (31.23%), Postives = 120/253 (47.43%), Query Frame = 1
Query: 430 FDALFKAVSNGHLASLKSILENDFSVQAFRNLSSTLLHQAASNSQSHILEYLVQHGAYVDGANAQQMTALHVSSRVGNVDSVRVLLENGADINDVDYDNRSPLYFSVYDGHLECVKYLLENPKLNINIHRKGGWTYLHEAARFGHFECLKLLIKTPGMNLMSRTDDAHWTPGHMAASSGHYDCLALLIENKIDINAGGGPHHSSTLLHEASHGGHKDIVKLLLEKGANPS-LYSGHNLPHHIACRRGYTEVLE 1185
F L A G + + +LE D A T LH A ++ I++ L+ G T LH++++ V+ R LL+ G N +PL+ + +GH E V LL + N N+ K G T LH A+ GH +LIK M + T +TP H+A+ G+ + L++++ D+NA +S LH+A+ GH DIV LLL+ GA+P+ + S P IA R GY V +
Sbjct: 537 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM--VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP--LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 784 HSP 6 Score: 98.5969 bits (244), Expect = 5.274e-21 Identity = 119/458 (25.98%), Postives = 194/458 (42.36%), Query Frame = 1
Query: 424 DNFDALFKAVSNGHLASLKSILENDFSVQAFRNLSSTLLHQAASNSQSHILEYLVQHGAYVDGANAQQMTALHVSSRVGNVDSVRVLLENGADINDVDYDNRSPLYFSVYDGHLECVKYLLENPKLNINIHRKGGWTYLHEAARFGHFECLKLLIKT-PGMNLMSRTDDAHWTPGHMAASSGHYDCLALLIENKIDINAGGGPHHSSTLLHEASHGGHKDIVKLLLEKGANPSLYSGHNL-PHHIACRRGYTEVLEEYFQFFTKTPKHGRLIDAFTNVDPVTNALSYQNSLHLVSXXXXXXXXXXXXXXXAKHLPNGMHMYPVMLAACKMHIDCLKILLR---EIKNTSIGH----EVLQRDGHQSALHHLCIKTYKTNNKS--------IACAC-------LLLNSGMINIDQYDEDWNIPTPLYLAGRNGAVGLVQYLINMGADARLCDSLREYTL 1725
+ + L A GH+ + +L + ++ +T LH AA Q ++ LV +GA V+ + + T L+++++ +++ V+ LLENGA+ N D +PL ++ GH V +L +N K LH AAR +L++ P +++S+T +TP H+AA + + LL+ +N P + T LH AS G+ +V+LLL++GA + L P H A R G+ + E HG I A T N LS P+ +AA H+DC+++LL+ EI + ++ H V GH L K K N+++ IAC LLL +G +ID E TPL++A G + +V+ L+ GA + + E L
Sbjct: 44 NGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHL-----INYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTG---FTPLHIAAHYENLNVAQLLLNRGASVNF--TPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLD-------HGAPIQAKTK-----NGLS-----------------------------------PIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGA-SIDAVTESGL--TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL 441 The following BLAST results are available for this feature:
BLAST of TCONS_00007014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.