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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007013 ID=TCONS_00007013|Name=TCONS_00007013|organism=Clytia hemisphaerica|type=transcript|length=1279bp
ATAAAATTTAACGCGTAAGTCACTTTGCAACTTTCCTAGGCCCACTTTGT
AATTTTCAAATGCAAATATTATGAAATTTGATTAGCGTAGAGTGATATAT
AAGGAGGGATCAAACATCTTCTAAATTACTTGAATTTGTCAAAAAGAact
caaaacttaaaaacacttttaatcttgttattttctcatcaataaaaaaa
tgaattcgTTCCTCGTTTTAACTTTACTTGTTGTCaccatgatgacgtca
tcagttttcgGTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCAT
GTGGAGATTCGGCTTCCGGCAAAATGGAGCAAATTATAACGATAATCAAC
TATGGTGTGGAGGACGCCGAACACAAATCAAAAACGGAGGACGTTGTGGC
GTTTGCGGAGATGCCGCACATCTCAGAAATCAACCACATATGGATGGAGG
TCGTTATGGAAACCGAATCATTGGCAAAACTTACAGACGTGGACAAAACT
TTGAACTCGACGTCTTATTGACTGCAAGCCATTTGGGATACTTCGAATTC
CGTATCGGAGATTTCAGCAACAGGGATACTTCCGGTGACAAAGAGGGAAA
ATTAAACGGAGTCCTTTTACGCCAAGTTAACGGACAAACGAAATACCCAA
TCCGAACCAGCGGACGTAATGTACACAAAATCCACTTGAAATTACCTTCC
CACTTGACCTGTGAACGTTGTGTGATTCAATGGTGGTACAAAACTGGCAA
CTCTTGGGGATGTGATGCTAAAGGCTGTGGTATGGGTCATGGTGAACAGG
AGCATTTTGTCAattgtgctgacgtcagcatttatTAAACAAGAAACTCG
ATATCTcattttttgtgtctttttttataattatttatTTGACTGAAACT
TAGTATAATTTAAAATCTATTTATAATAAATACCTTGGATGtgactaaaa
ataattattgattCATATTTCTTTCATCATTTACCATATGGCCACAAGAG
TGTAACGTGGTTCAATGAACATTCCATTTCTGCAAGGTCAAATGCCCGAT
ATAATCGTTTGGAACAATTCTTAGCAAATTTCAATGCTTCAACTCTTTGT
TGACTTTCCCCGTGACGTGTGTGAAATTTCAAGCTTCGTGATCCCATTTC
CCTAACATAATGAAGACTGACAGAGGCATTTCTTGGAACTCGCAATAAAT
TACTTCTTGTAGAGTACAATATTACACCTGAAATAAAGAGCATATTTTAT
TGTGATCTTTTATTACattgaaatttaat Run BLAST on NCBI protein sequence of TCONS_00007013-protein >TCONS_00007013-protein ID=TCONS_00007013-protein|Name=TCONS_00007013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MNSFLVLTLLVVTMMTSSVFGHGYMRSPPARNSMWRFGFRQNGANYNDNQ
LWCGGRRTQIKNGGRCGVCGDAAHLRNQPHMDGGRYGNRIIGKTYRRGQN
FELDVLLTASHLGYFEFRIGDFSNRDTSGDKEGKLNGVLLRQVNGQTKYP
IRTSGRNVHKIHLKLPSHLTCERCVIQWWYKTGNSWGCDAKGCGMGHGEQ
EHFVNCADVSIY Run BLAST on NCBI transcript from alignment at sc0000073:104839..108431+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007013 ID=TCONS_00007013|Name=TCONS_00007013|organism=Clytia hemisphaerica|type=transcript|length=3593bp|location=Sequence derived from alignment at sc0000073:104839..108431+ (Clytia hemisphaerica)
ATAAAATTTAACGCGTAAGTCACTTTGCAACTTTCCTAGGCCCACTTTGT
AATTTTCAAATGCAAATATTATGAAATTTGATTAGCGTAGAGTGATATAT
AAGGAGGGATCAAACATCTTCTAAATTACTTGAATTTGTCAAAAAGAact
caaaacttaaaaacacttttaatcttgttattttctcatcaataaaaaaa
tgaattcgTTCCTCGTTTTAACTTTACTTGTTGTCaccatgatgacgtca
tcagttttcgGTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCAT
GTGGAGATTCGGCTTCCGGCAAAATGGAGCAAATTATAACGATAATCAAC
TATGGTGTGGAGGTAAAATAAAGTCTCAATTACTTTTTACTAAATTAAAA
CCACTGTCATCGAACCAGTATGTGATTTTCTATTCACTCGAAAGTTAAAC
TGAATCAGTCACTTTTGAAACACCCAAAAAACTTTCCCGATAGCGTaaac
gatgttatcgtccgctacagtgatagtaaaggcgagAAAATATGGTGGTA
TTcggaaaaaaaatcggcgggagagtttcgaagactggcaaactctactg
actgtaaactcttttcggcaaagaacccgtttgcaaattttttttcggct
ttggggttatttcttagatagtgatttgtcttagactagtCTACCAATTG
GGTTGCCCAGTCAAAAGCGAGTTTGATACAGAAATAAAATAGCACCCATT
TTTGTTGAGGTGGTCTGAAAATCAACccctcgggtgaaacaaggcatgtc
ccaaatatattttgcgtgacgcgcaccgcttccaattattcctgaacgtt
catatatagctcaaaagaatcatatcaacgagcggatttcgaaaagtgct
gggtcaaaaatttacatcaagccaatctcaagatatcggtcaaaaattga
ttttgacgttataaaatacatcgaaaaaacacgtcataaacataagtaag
attcaaatgacgtcattattgaaaaacagcgataacttcaattttattta
atgcaatcaacaccaaattttgactggagttgtaaattaatgattctgaa
atatttgttcaaaaattttcagaaaatttgaatgacgtcatttgttgtcg
ggaaaaattaaaatacgtcaaaaaatgctgacgtcatcgtgaattttcaa
ttttttttatgaaatattttagaatcgttaattAACATCtcccgtcaaaa
ttttgctttgattgtagtaagttaatcggaattatcgccttttttcaata
atgacgtcatttaaattgtctttttgacgtgttttttcgatgtattttat
aacgtcaaaatcacttttcgaaatcctctcgttgatacgattcttttgag
ctatatatgaaagttaatgaataatggaagcggtgtgcgtcacgcaaaat
atatttgggacatgccttgtttcacccgagccGATCACTAAATTGTAAAT
AGTTTTTCACCGCTTATCACTAGCTGGAAGTGATAGCTCAGAAAAAATTT
AGAGATTTGTGAAAGAAAATCTGGAATCCTTAATTTTTCATCAACATATC
gttttgataacatttttggaaaagtgTCGAAAAAACCGGATTTCTAAATT
TTCCAATATGAAAACGGTCCGTATATTTTTGTAAAGGCTCAGCTCTAATG
GCTAAAAAGCGAAATAATAGATATTGTTTACTGAGGCAAGGGATATCTTT
AGTTATCTGTATATATTTTAACCACAGGACGCCGAACACAAATCAAAAAC
GGAGGACGTTGTGGCGTTTGCGGAGATGCCGCACATCTCAGAAATCAACC
ACATATGTAAGTCTGACCTCACAAACTTTTCCCAAGTAATTTCCAGGAGT
AACGGAGGTGTGACCACAGATCCCTGTAAATCCCGACGGCCTAGACGGAG
CTGTAAGGTTTTCCATGCAAAAAAAACGTtaatattgcaaaaaatattat
tgttgCTCTTGTTTACGAAATTacattgtaatgtcacgtgacctagatGG
GATTTTCTATCTAACCACACGGCACACTTTTTTTTTAGCCAAAGTTATCT
ATCTAGCACTTCGCGTTTTATAAATTTGTGGGAGTAGTTTGTATTTGTGC
GTAAAGTATTTGTACCAAAAACCCAATTATGTTTGATCTGTGTGAAaatg
gacgaaccttttcaaggcaaaaagagattcttggaaatgtgtggaaGCCC
CTTGGAAAGtgacaaaactttcaaaaataccCTTGGTTGGAAAAATTCAT
TTCCTACCTTAAAAGTGAGGGTGGGCGAACTACAActagtcttttacccc
ctggaaattcttctccgattgccccctggaaatgttcggaATGGCCCAAT
ACAATGTAACGTTAGACTGAGACAACAGACAACTGTCTTCGGCAAACGAA
ATTagaataaaaatagaaatcatCAATTCTCGACGTTTATATTCTTCAGG
GATGGAGGTCGTTATGGAAACCGAATCATTGGCAAAACTTACAGACGTGG
ACAAAACTTTGAACTCGACGTCTTATTGACTGCAAGCCATTTGGGATACT
TCGAATTCCGTATCGGAGATTTCAGCAACAGGGATACTTCCGGTGACAAA
GAGGGAAAATTAAACGGAGTCCTTTTACGCCAAgtgagtttttgtttttg
ccGTGTGTGAAACCTATCATTTTTTCATACAAAGGCTGTTGTAAAAAGTC
AATTTAAAGACCAGAGAAATCTGGATTCGGTTCGGTTAGCTTTAGTTAGA
GGAAAGAGTAGGTAAACAAAAGAAAGGCTCTGTAATTCTCTGAAATAGCT
CGTGATAAGCACGTTCGGCTCAAATTCGAGAAATTTAGTGTGAATGCAAA
AAGTGAATTGTCTCAAACTGCCCGCTTTTCTATTCAAAGGTTAACGGACA
AACGAAATACCCAATCCGAACCAGCGGACGTAATGTACACAAAATCCACT
TGAAATTACCTTCCCACTTGACCTGTGAACGTTGTGTGATTCAATGGTGG
TACAAAACTGGCAACTCTTGGGGATGTGATGCTAAAGGCTGTGGTATGGG
TCATGGTGAACAGGAGCATTTTGTCAattgtgctgacgtcagcatttatT
AAACAAGAAACTCGATATCTcattttttgtgtctttttttataattattt
atTTGACTGAAACTTAGTATAATTTAAAATCTATTTATAATAAATACCTT
GGATGtgactaaaaataattattgattCATATTTCTTTCATCATTTACCA
TATGGCCACAAGAGTGTAACGTGGTTCAATGAACATTCCATTTCTGCAAG
GTCAAATGCCCGATATAATCGTTTGGAACAATTCTTAGCAAATTTCAATG
CTTCAACTCTTTGTTGACTTTCCCCGTGACGTGTGTGAAATTTCAAGCTT
CGTGATCCCATTTCCCTAACATAATGAAGACTGACAGAGGCATTTCTTGG
AACTCGCAATAAATTACTTCTTGTAGAGTACAATATTACACCTGAAATAA
AGAGCATATTTTATTGTGATCTTTTATTACattgaaatttaat Coding sequence (CDS) from alignment at sc0000073:104839..108431+ >TCONS_00007013 ID=TCONS_00007013|Name=TCONS_00007013|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at sc0000073:104839..108431+ (Clytia hemisphaerica)
atgaattcgTTCCTCGTTTTAACTTTACTTGTTGTCaccatgatgacgtc
atcagttttcgGTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCA
TGTGGAGATTCGGCTTCCGGCAAAATGGAGCAAATTATAACGATAATCAA
CTATGGTGTGGAGGACGCCGAACACAAATCAAAAACGGAGGACGTTGTGG
CGTTTGCGGAGATGCCGCACATCTCAGAAATCAACCACATATGGATGGAG
GTCGTTATGGAAACCGAATCATTGGCAAAACTTACAGACGTGGACAAAAC
TTTGAACTCGACGTCTTATTGACTGCAAGCCATTTGGGATACTTCGAATT
CCGTATCGGAGATTTCAGCAACAGGGATACTTCCGGTGACAAAGAGGGAA
AATTAAACGGAGTCCTTTTACGCCAAGTTAACGGACAAACGAAATACCCA
ATCCGAACCAGCGGACGTAATGTACACAAAATCCACTTGAAATTACCTTC
CCACTTGACCTGTGAACGTTGTGTGATTCAATGGTGGTACAAAACTGGCA
ACTCTTGGGGATGTGATGCTAAAGGCTGTGGTATGGGTCATGGTGAACAG
GAGCATTTTGTCAattgtgctgacgtcagcatttatTAAatgaattcgTT
CCTCGTTTTAACTTTACTTGTTGTCaccatgatgacgtcatcagttttcg
GTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCATGTGGAGATTC
GGCTTCCGGCAAAATGGAGCAAATTATAACGATAATCAACTATGGTGTGG
AGGACGCCGAACACAAATCAAAAACGGAGGACGTTGTGGCGTTTGCGGAG
ATGCCGCACATCTCAGAAATCAACCACATATGGATGGAGGTCGTTATGGA
AACCGAATCATTGGCAAAACTTACAGACGTGGACAAAACTTTGAACTCGA
CGTCTTATTGACTGCAAGCCATTTGGGATACTTCGAATTCCGTATCGGAG
ATTTCAGCAACAGGGATACTTCCGGTGACAAAGAGGGAAAATTAAACGGA
GTCCTTTTACGCCAAGTTAACGGACAAACGAAATACCCAATCCGAACCAG
CGGACGTAATGTACACAAAATCCACTTGAAATTACCTTCCCACTTGACCT
GTGAACGTTGTGTGATTCAATGGTGGTACAAAACTGGCAACTCTTGGGGA
TGTGATGCTAAAGGCTGTGGTATGGGTCATGGTGAACAGGAGCATTTTGT
CAattgtgctgacgtcagcatttatTAAatgaattcgTTCCTCGTTTTAA
CTTTACTTGTTGTCaccatgatgacgtcatcagttttcgGTCACGGTTAC
ATGAGAAGTCCACCAGCCAGAAACAGCATGTGGAGATTCGGCTTCCGGCA
AAATGGAGCAAATTATAACGATAATCAACTATGGTGTGGAGGACGCCGAA
CACAAATCAAAAACGGAGGACGTTGTGGCGTTTGCGGAGATGCCGCACAT
CTCAGAAATCAACCACATATGGATGGAGGTCGTTATGGAAACCGAATCAT
TGGCAAAACTTACAGACGTGGACAAAACTTTGAACTCGACGTCTTATTGA
CTGCAAGCCATTTGGGATACTTCGAATTCCGTATCGGAGATTTCAGCAAC
AGGGATACTTCCGGTGACAAAGAGGGAAAATTAAACGGAGTCCTTTTACG
CCAAGTTAACGGACAAACGAAATACCCAATCCGAACCAGCGGACGTAATG
TACACAAAATCCACTTGAAATTACCTTCCCACTTGACCTGTGAACGTTGT
GTGATTCAATGGTGGTACAAAACTGGCAACTCTTGGGGATGTGATGCTAA
AGGCTGTGGTATGGGTCATGGTGAACAGGAGCATTTTGTCAattgtgctg
acgtcagcatttatTAAatgaattcgTTCCTCGTTTTAACTTTACTTGTT
GTCaccatgatgacgtcatcagttttcgGTCACGGTTACATGAGAAGTCC
ACCAGCCAGAAACAGCATGTGGAGATTCGGCTTCCGGCAAAATGGAGCAA
ATTATAACGATAATCAACTATGGTGTGGAGGACGCCGAACACAAATCAAA
AACGGAGGACGTTGTGGCGTTTGCGGAGATGCCGCACATCTCAGAAATCA
ACCACATATGGATGGAGGTCGTTATGGAAACCGAATCATTGGCAAAACTT
ACAGACGTGGACAAAACTTTGAACTCGACGTCTTATTGACTGCAAGCCAT
TTGGGATACTTCGAATTCCGTATCGGAGATTTCAGCAACAGGGATACTTC
CGGTGACAAAGAGGGAAAATTAAACGGAGTCCTTTTACGCCAAGTTAACG
GACAAACGAAATACCCAATCCGAACCAGCGGACGTAATGTACACAAAATC
CACTTGAAATTACCTTCCCACTTGACCTGTGAACGTTGTGTGATTCAATG
GTGGTACAAAACTGGCAACTCTTGGGGATGTGATGCTAAAGGCTGTGGTA
TGGGTCATGGTGAACAGGAGCATTTTGTCAattgtgctgacgtcagcatt
tatTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007013-exon-sc0000073-1491911889:104839..105200 | TCONS_00007013-exon-sc0000073-1491911889:104839..105200 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1510915933:104839..105200 | TCONS_00007013-exon-sc0000073-1510915933:104839..105200 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1575043694:104839..105200 | TCONS_00007013-exon-sc0000073-1575043694:104839..105200 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1491911889:106616..106694 | TCONS_00007013-exon-sc0000073-1491911889:106616..106694 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1510915933:106616..106694 | TCONS_00007013-exon-sc0000073-1510915933:106616..106694 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1575043694:106616..106694 | TCONS_00007013-exon-sc0000073-1575043694:106616..106694 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1491911889:107338..107521 | TCONS_00007013-exon-sc0000073-1491911889:107338..107521 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1510915933:107338..107521 | TCONS_00007013-exon-sc0000073-1510915933:107338..107521 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1575043694:107338..107521 | TCONS_00007013-exon-sc0000073-1575043694:107338..107521 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1491911889:107778..108431 | TCONS_00007013-exon-sc0000073-1491911889:107778..108431 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1510915933:107778..108431 | TCONS_00007013-exon-sc0000073-1510915933:107778..108431 | Clytia hemisphaerica | exon |
| TCONS_00007013-exon-sc0000073-1575043694:107778..108431 | TCONS_00007013-exon-sc0000073-1575043694:107778..108431 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:104839..108431 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004302 | Cellulose/chitin-bd_N |
Blast
The following BLAST results are available for this feature:
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