TCONS_00007008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007008
Unique NameTCONS_00007008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2178

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007008 ID=TCONS_00007008|Name=TCONS_00007008|organism=Clytia hemisphaerica|type=transcript|length=2178bp
AGCAAAGCTGAAAACTAATAATCATTTTGGTTTggaattaaaactttttt
tcagttaGAAATAAGGAACAATAAAAATGCCGACTGTAGGGATAAAGAGA
GATTTGCTCTTCCAAGCATTGGGAAGGGAGTACACTGTTGAAGAATTTGA
AGAGCTTTGTTTTGACTATGGCCTAGAATTGGATGAAGTGAcatcagaaa
agacaatgatTTCCAAAGAGAAAGGAGAAGGAAAAGCATCAGAAGCCTCT
GAAGAAATCATCTATAAGATTGATGTTCCTGCTAATCGatatGATTTGCT
TTGTCTGGAAGGATTGACACGCAGTTTATTGGTTTTTCAAGAAAAGATGA
AGATTCCACATTTCAAGACAATTTTACCAACAAACCCACAAAAACTTATC
ATTGACAAACCTACAGCAGAGGTTCGCCAGTATGCAGTTGCAGCCGTCCT
AAGGAATATTACGTTCACTCAGGATTCATACAACAGTTTCATTGATTTAC
AAGACAAACTTCATCACAACATTTGTCGCCGTCGGACGCTAGTTTCCATG
GGAACACACGATTTAGATACCATTCAAGGACCATTCACATACACCGCTAA
ACCGCCATCAGAGATTATTTTCAAAGCATTgaatcaaacaaaagaaatga
cTGCTGTTGAACTCATGCAACATTATAAGacGGATAGTCATCTGAAGAAC
TTCTTGCACATCATAGAAGACAAACCTGTGTATCCAGTCATTTATGATGC
TAATGGAATCGTTCTCTCCATGCCACCTATTATTAATGGTGACCATTCCA
AAATTACCTTAAACACAAAGAACGTCTTCATCGAAATCACTGCAACTGAT
TTGCATAAGGCGAAAGTTGTTCTGGACATTTTGACCACTGCATTCAGTTG
TTATTGCGCTGATAAATTCTCCGTTGAAATTTGTGATGTCATTTCTGCTG
ATGGCACGACTAACCAAACACCAgaatTGGCATACCGCGAAGAAGTTATC
TATCCTGAATACGCGTGCAAAACTATCGGAGCAAGATTGAAAGGTGACAA
GATGGCGAAACTGTTGacgaaaatgtttttgaaaagcgAAGTGTTGAAAG
ATGGTCGTTTGAGATGTATTGTACCGCCTTGTAGAGctgATGTTATTCAT
GCTTGTGACATTTACGAAGATATCGCCATCGCTTATGGATACAACAACAT
AGAAGAACGTATCCCAAGAACGAGCACCATCGCTCATCAGCTTCCCATCA
ATAAATTGAGTGACTTGATCCGAATGGAGATCGCATTCGCAGGTTTCACT
GAAGCTCTTACTTTCTCCTTGTGCTCACGCGAAGACGTTGCAGAAAAGTT
GAATCGTCCAGACGGTACTAAAAATGCCGTCCATATTTCCAACCCCAAAA
CAGCGGAATTCCAGATCGCTCGAACGACATTGCTCCCTGGCTTACTAAAG
ACGATTGCCAACAACAAAAACATGCCTCTTCCTTTGAAATTGTTCGAGCT
CTCTGATGTCGTTCTCATTGATGATCAAAAAGACGTCGGTGCACGTAACG
AACGTCGGTTATGTGCAGTGAATTGCAGTAAAACACCAGGCTTCGAAGTC
ATCCACGGCTTATTGGATCGCCTGATGACGGTATTAAATAAAACACCGAC
TGCAGATAAAGTGAAAAATCCGAATGAAGGATATCGCATCTCCAAAGGAC
AAGATCCAACATTCTTTCCGGGCCGTTCTGCGGATATTTTGTTCAACGGA
AAAGTCATCGGACAAATGGGAGTTGTTCACCCGGAAGTACTCGGAAAATT
CGAGATCACAAACCCATGTGCTGCTCTAGAAATTAATTTAGAAGTTTTTC
TATAGACAAATAtctatttttataattttagttCTGTCTATTGCATTTTT
ACGCGAATTATTTTATTAACTCTATGAATGAATGAACGGACAGATGACAT
ATAAGTGAACGGtatttatttatcaaaataaacaacGAACGGAGACCTGG
TTTTCCTCTTCTCACTTCATTTTTGAAAGAATCTTAAGGTCTTAAGGGTA
tgcttttaaaagaaattgggTGATTCTACttcatatccatacaggggCGT
GAACGAACATTTTCAGGTTGTAATCGGaaaagaagaatttccaggggtaa
ATGACTGATTTTAATTCGTCCATCCTCC
Run BLAST on NCBI

transcript from alignment at sc0000073:85751..97028+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007008 ID=TCONS_00007008|Name=TCONS_00007008|organism=Clytia hemisphaerica|type=transcript|length=11278bp|location=Sequence derived from alignment at sc0000073:85751..97028+ (Clytia hemisphaerica)
AGCAAAGCTGAAAACTAATAATCATTTTGGTTTggaattaaaactttttt tcagttaGAAATAAGGAACAATAAAAATGCCGACTGTAGGGATAAAGAGA GATTTGCTCTTCCAAGCATTGGGAAGGGAGTACAGTAAGTTTTCATTata tattgcaaactttttcttgcttttagATTTTGAACATCACTCTAAAAGCT TATTATTCTGATTTAGTCCAATTATTGAACTTCTTTTTGTGTCCAAATTC TGAACAGATATTAGCCATTAACCCAACATTATAATGTTTTAAccaaattt tagtaaaaatgtTACCATAATCTAAAAGATTGAAAGATAAATTTTCTTCC CTTTTTAccctttttatctttttttgtccatttcagTCTATTTTAACATA TGGAACTTTACTATTAATTTCTCTGCTTTAAATGTGCACTGTGTTTTGCT ATCATgtagaaaccactctcaaggaaaTTACTGTAATTACGCTGACATGG TTCTCACATGATAGCAAAACACAGTGCACAATGCCAAAAAAGAGTGCACA ACTAAGAGGCATGACTCCTACTATTTACTCTCTTTTTAGCTGTTGAAGAA TTTGAAGAGCTTTGTTTTGACTATGGCCTAGAATTGGATGAAGTGGTAAG AAaagaattaaatattttttttgatcttCCCAGATGTATTTTCTGTTTAA GGATAGATAGcaaagctctatctagtgttttatatatgaTATTGGTAATC TTTGCTGAATAAGATGAATACTCACACAAAGttacagggctgcaaataag cgtcggtCATCNaacttttaagagtgtttctaagttaacttttatcaact tgctttcttcgtaacttccaaaggtgtttctaagatcacttttatcgaat caatttctctgttaaANggctgcaaataagcgtcggtcatcggtcaatgt ccgactgaaaaagccatttgaccgactgaaaatcttttgtgtcggtcatg atgtccgaaAGAAAAAACGAATAAACCAATAActgagagttgaaaataaa tctcttaaCACACTtgtctcttacttagcctattcctttaatactcgctt cctttgtagctttcagggtgtttctaagttaacNatacactgaatgaccg acaggattttgagtttgaccgacaggatttcatttctgtcggacatgatg tccaattgactaaaaatatttatttgcagccctgaaGTTATTGTTATTAA TGataattataattattttaaatcaatgaaatacaacttttattcaattt ttcttgtgtATTCATTTATATTGACAATAGAcatcagaaaagacaatgat TTCCAAAGAGAAAGGAGAAGGAAAAGCATCAGAAGCCTCTGAAGAAATCA TCTATAAGATTGATGTTCCTGCTAATCGGTAAAACAAGCAAAGTGTTCAG TTTTTATCccttttataaatttatttcaaacaaTATTTATCAtcgaattt ctttttaatcTGTTTTTGAATTATCAGATGtttcgattttttgttttttt tagatatGATTTGCTTTGTCTGGAAGGATTGACACGCAGTTTATTGGTTT TTCAAGAAAAGTAAGGATCAAACAAAGAACCTTGATTTTTCATAGGGAAG AATGTTTCTAACTGAGAAAGAACTAACTTTTTAGCCACCAAGTAGTCCCT TTATATTACATGATAGAACCGATGAGAAAACTGTGTCTTTGAGGCAGTCA GCTGTAGATGCCAGCAATATTCATTTACTGCagaatttttgctattttta aaactcaatttaATTATATTACTTCATTTTTCAGGATGAAGATTCCACAT TTCAAGACAATTTTACCAACAAACCCACAAAAACTTATCATTGACAAACC TGTAAGAAAATCCCTAAAACAACGATTAAATTATCAATATGTTACTGTAA TAAAGCATTAACTTTTCCTCATTTTAACATTTCTTCTGGTTTTTTGGATG ACTGACTAGTTTCTAGAAAGAAGATCAGTTTGAATTCAGGAAAGGTGTGT TTTCCTAGGGGTTTCCGCACCAAACcttgaaaaacttaaaaatgaacTCT CAACCAACCTTGAAAAAGCATGATTCTCATAACATGTTTATGTCTTGTTT TGGCTCAGATATTTGGGCtgtgtttttttctatttttgtttgcttgCAAT CATCTTtatgttttgtaataaaaaagttGCAAATAGTCTCTCTTGATCAA TCTGAGTTATGAAAATCTTGTAAAGGATCTTCTACACTGTCAAAGACCTT AAAAATCTCCTACATTTTGGTGAAAAAACCtctaaaatcttgaaaatggg GAGACACCATGTTGTattgtttatctttttctgtATTCAGACAGCAGAGG TTCGCCAGTATGCAGTTGCAGCCGTCCTAAGGAATATTACGTTCACTCAG GTCAGTAAACACACAGttttttgttatcatttttgttAATGTTGTTTTAA AGAACATACGTGATCTATAAAATTATCTGATTTatacactttttcgaccg tagccaccaattgtcGCGCAGGCATTTTTTTCCGCCTTATccccctaaaa ccgtcccagtccttttttcgcacgtatggacaatagaaaaatgtgccaaa aaaggattggatcgagtttagggggatgatTAAATatttaagtggcacgc gcctgaccgcgcgactacgatcgaaaaggtgtattgtatgTCTTGACTTG CATTCAGAGTCTTAATAATATTAGGCATTCTCGTACTCAagatggaaaaa agtttttgtacgTTTacatcaaaatattaaaaaaacttcTGCATCAAAAC AGAAGCTTGTACATAAACTATTAAAAGCATTGATTAACAAACAAATAATT AAAGGCAAAAACACTGGCTTCTTCACTTGTTGATTATGTCACTTGTTGAT TATGTCACTTTTTGAAATTGCAGGATTCATACAACAGTTTCATTGATTTA CAAGACAAACTTCATCACAACATTTGTCGCCGTCGGACGCTAGTTTCCAT GGGAACACACGATTTAGATACCATTCAAGGACCATTCACATACACCGCTA AACCGCCATCAGAGATTATTTTCAAAGCATTgaatcaaacaaaagaaatg acTGCTGTTGAACTCATGCAACATTATAAGGTAACTTATTTTGCTTGGCT TTTTAGATCATACTATGATTTGTTTACTAGCTAACTTCACCTAAATCTAA TTTAAAATATCAGCAATCATAGCATAGTAATTAAAGTCtatttttttcac taaatggAACATATATTTGATCTAAAAATGGTAGTGGAGCCATggcaaat caaaaatattttcagcttccTCAAATGAAAATGTCAATCACTTTATATTC ATTGTGTTCCATTCTTAACTTGTCGCTGCTCACATAAAATATGtttattt ataaattttgattaaGCCTGATTCATAAGTCAATTTAGGGTTTCATCAAA TTAAAATGCCTTCACGTTATAATTTTTACTCAAGATTAATTCACTCATAA TGTCATTTAGCATCTCAAATGTGCCGacatctttttattttattttagac GGATAGTCATCTGAAGAACTTCTTGCACATCATAGAAGACAAACCTGTGT ATCCAGTCATTTATGATGCTAATGGAATCGTTCTCTCCATGCCACCTATT ATTAATGGTATTTTAAAGTTTACAAAACTACTAAATTCTGAATCTAGAGA ACATTATGAAAGAGTTACAAACAGCTATAGTGAAGTTTAACTTTTCCAGG GAACATCTTTTACACTCTCATAACGATACTAATTTGCTAATTTGTATTGT TTTAGACATATGGTATAGTagattataaaatatttcaatattttaatgta atattttaatattttaatatattgTTTGGATGTAAATGGTTTAGGAATAA GTTTGCAACTAATCAAGGTTAGACGAATCGATGATGTTAGAGTGCTCGAT GGGTAACCAGAGCCATATAATTATCAAGAAAAGTTATCAACAATTGTTTG ACGGATTGAAAGATAACTTTTCTTGATAAGTTTGCAACTAGAAATGATTT TCACTAACACGACATTTCGTTTTCCATCTTTAGGTGACCATTCCAAAATT ACCTTAAACACAAAGAACGTCTTCATCGAAATCACTGCAACTGATTTGCA TAAGGTAATATATTTGATAATGAGTTGCTTCGTCGTTTTAAAGTGGATAG AATTTCGCGATTTTCCTTgtgaatataatttaaaaatCCGAATccgaaat gaaagaaatttggtgaataaaaggccaattttcgaaatttggtccacgcg aaattttagattcttgattcgcgaaaaaaaaGTCTAAACATGAATTAATC CACTTTTAAGGTACTCAAACCCTGAATACTTTTGATTCCGAAAAACAGCT TTCGCTGAAAAGACTTATCTTTGTCTGATTTAATTtcacattttaatttt ttcattattttccaGGCGAAAGTTGTTCTGGACATTTTGACCACTGCATT CAGTTGTTATTGCGCTGATAAATTCTCGTAAGTGGAAATGTATCACCATC ACACCATTGTTTGTTCTTGTTAACAAATCAGTAGTATTGGTTACTATgtc ttttatatttattttaaatttcagGGTTGTACTTTTAGCATAGCGAGTTG tccaaaaaaagtttccataaatttcaaattttgaagtagTGCGTCCTATT TGTGCTATCGAATTGAAATTTCGTATGGCTAAACTTTGACTTCtggaaat ttcaatttcagaaACTGATATTTGGTAAAGTTATGAGGTTATTCTGAATC TAAAATTTCAACTTGAATAAACTGAACAAAAGCACCTTTGAAACTTCTGA AATTTTATGCAATGAATGAACTTTCCTTCCATTCAGCGTTGAAATTTGTG ATGTCATTTCTGCTGATGGCACGACTAACCAAACACCAGTAAGTGTACCT TATGCTTGTCTTGATAAGAACCTTGAAACTAAGAATCGCCAGGATTTTGA AAAACAGTGATTCGTATTCTATCAGATTCTCTTTCTATTTCATATTTATA AAAACCTTAACCGGAGATGCGAAGTCAGTAAGGATAAGGAACGTTTTgtc ttcttttcattttcaggaatTGGCATACCGCGAAGAAGTTATCTATCCTG AATACGCGTGCAAAACTATCGGAGCAAGGTTTGGTTTGAATGGTTTCGGT GTAGAATCTACTAGTTTCGAATTACTTTAAGTCTAGGGTTACACTTGGAT CAATTAGCAAAGCACTATAGaggtttttatgttttgttaagCTATGtaac ttccgccattatggaagtaAACGTTCGATTTGTGTAAGGAATTGCCTCTA CGGATttgaacgtttgcttccataatggcggaaattacgtaacttaaaaA TACATGAAAACCTCTAAAGTTGCACAATTCTGAATAGGCTCTTACGGAAA CTCGGTTTGTTTCTGAGATTGAAATCAACCTTTAAATGTTGTTGGTTTTC TAGATTGAAAGGTGACAAGATGGCGAAACTGTTGacgaaaatgtttttga aaagcgAAGTGTTGAAAGATGGTCGTTTGAGATGTATTGTACCGCCTTGT AGAGctggtttgtttttgtttgttttttatacgGAATGACTAAGTATTCT ACATTAATTTTGAAAGATGAGCAAACAGTTTGATAAATGTATAGTTTAGA TTGGCCCTAAAGTTACTTGATTTTGTGTTgataaaattattattatacTC CTTTCCCGAGATGTTTCGACTTTTTTATTACAATATGCTTGAGTAAGTGT TTTATtttggtaaaataaaaatatgtaaaaaaatacaaaacaaataaaaa aaggattATTTAAAAAGCTCCTTCTggtttttgagtaattttggataaaa cttttatttttgacaataGAATTAAATGAAAACGAGGCCGGCCTGTATGT TTCGATTTTTATGAGACATTTGACCACGAATAAACATAgccatattcatg atatgcaccattgcaatgtcttccattccacccaatagctaattggttga aagtgacgtattgactgattttacgtcacttacaaccaatgagctattgg gtggaatggaagacaatGTATACAGTGATAGAgcttttgagctcaaattt ccagGATTGATTCGTCTCTATAATACAAACATACAAATTTTGAtgtgatt tgaaaacatttaaaaaatagcCACATCTCGGGTAGGTGTATTGACTCTTA CCtttaaatgttttctttttttcactaGATGTTATTCATGCTTGTGACAT TTACGAANaatgttttctctttttcaCTAGATGTTATTCATGCTTGTGAC ATTTACGAAGATATCGCCATCGCTTATGGATACAACAACATAGAAGAACG TATCCCAAGAACGAGCACCATCGCTCATCAGGTAAACGTCTTTTTTGGCT CGGGATGGGCACTATCCGCTCACCAGGTAGGTGGCACACATTGGGAATGA AGAAAAGATctaattttcgtgaattttgtgATACAGTTGaggctctctaa ttcgatctttaaggggaattggattttcatcgaataagggagcttatcga ataagagagtgtcgaattagagaggttCAACTGTATATGatatattatga cctttttaattttcacaaatGAAATACTTTTCACAAGGAACAGATGGGAG AATTATTCACATAATCGCaagattttaattgttctaaAGGATTATATATG TCACCAACTTCATAATCTGAATTTCTGAGGACAGGAAACGAGTCCAGTCA ATAAACGAGATCGGTGTTAAATATTTGTTTCCTTTTCCCAGCTTCCCATC AATAAATTGAGTGACTTGATCCGAATGGAGATCGCATTCGCAGGTTTCAC TGAAGCTCTTACTTTCTCCTTGGTAAGTACAGCTTTATTTCTCACTCAAG TCCACGTGAAGTTTTCGAGATAAGTTGTTCACTGCCATTTACAAACgaat tttttgctgattcaagaaatttaaatttacttGGCTTTGATTCTTAGATA ACAGTCAGTAAACGAGATCGCTGTTGTTAAGCTTTTCTTCTTTATCATAT AACATATTTTTAACCCGatttatttttgttgttctAGTGCTCACGCGAAG ACGTTGCAGAAAAGTTGAATCGTCCAGACGGTACTAAAAATGCCGTCCAT ATTTCCAACCCCAAAACAGCGGAATTCCAGGTAAAAAGATCTCGCTTCGA ATTTAATCGAGAAAGATAAATAGTTTTTCCttgttttctgaattttcatg TTATCGGGTAACTATTTTAGCGGGCAgcaattttctttgattgttttCAC TTAAAACAGAGAAATGGGATGGAATAGAAAAAGTGCTTCTCTGATTACCC GAAGTGTTCTGATCGTGTCTATTGAAAACTCCTNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNGTTTCTATATGCTGTGTTTATAAAA GTGGTTTTatgtttttcctttttgatccattactttttaaactttcagta tccagtaacaaattttacactaacttgtagtctgaaaaattctcatcaca atgataccaaaatattcctaaaaaatttgatagaaattcatcaaagacag atttgatttcttattttcgtgcactttagcttttaatctaattatgcggt catgatgccgttatatcattagaatcgctagaaaattctgagcaagaaaa tataggtatcttttggtataaaagaggtctcccaaaatataagcccctaa agtttacgcataatttaacctgaaacaaaagaatttcgtcataccactct aattatacaacttttttaaagcaacaacaaacGAAATCCATTAGCTCGaa acaaactcccttaagggcaaaggacctggtatatgacgagccgtttgtcT ATTGTTctgaagaagctgtttttccatctctttacattcctctgcttCAA AGTAACATGAAAAATTTGACTCCGCTGAAGTGATTTCCCCCTCACACAAT CACTGCCCTTTacatatccctggaccaagctatatccgccatctttgatc gaagtttttttagaattagtacccgtaaagaagccattgcaatgttaaaa attaacgtctaacggtgCTACATCATCAGAATCTTTCGAGGGAAAGTata tctagcgctctcgatgcatttacactattgagtagtgccgccattagggt accacttttcaaaaactccgatcaaagattttgcttggccgagATTGaaa aacttggtccagggtatataaaggacAATGCCCACAATAAACAGTATATT GCATttaaattatcaaaattcaatCTATACGCTCTTCCTTTTATTAGATC GCTCGAACGACATTGCTCCCTGGCTTACTAAAGACGATTGCCAACAACAA AAACATGCCTCTTCCTTTGAAATTGTTCGAGCTCTCTGATGTCGTTCTCA TTGATGATCAAAAAGGTTTGTTCCGTTCAACCCTCATCTCATTTGCTTAA TCATTCCTTCGGATTAAAGTTATTGTTGTCTTATTTCAATAACCATACTG CTCTGGTCGTTTTTGACATGCACATTGTCTAAAAATAACAACGTTAAAAC ACTgtctttgatttgaaatttgacTCTTATCTtaaggctggtctccactt ttgcgcgaaatgagcgaaaactttttaacgttttcgacaggttattggtc ggttgaaaaatgatgCGATTCCATTGGGcaaatctgacgtaacggtttaG AAAAGTTGAACTTCTTTATTGTTTCGCTCGAAACTTTTTAATGATGTAAG CTTTTCTGCAGGCAAAAACGAttgacaaaaagttttcgctcgtTTTCGCG CTTTAGCCTTTATTTGGAAAAACTGGTTCTCAAAAATATGACGAATGCTG CAGAGACAACTGTTTTAATTTCTTTGTCATCTTTTCACATAGACGTCGGT GCACGTAACGAACGTCGGTTATGTGCAGTGAATTGCAGTAAAACACCAGG CTTCGAAGTCATCCACGGCTTATTGGATCGCCTGATGACGGTATTAAATA AAACACCGACTGCAGATAAAGTGAAAAATCCGAATGAAGGATATCGCATC TCCAAAGGACAAGGTGAGTGGAAACTTTCTGTTTTCTCTAAGAAAACatg gcaattatgaaaaattcactatggtcagagcccttaaataagTTTAACAG TCTAAGTAACTAACAGTCTAAGTTCGTCCAATTTTTGGTTTCCGTCTGAT CGTGAGAggagtttttttaaatgactcaCTAAACCTAAGCTTTATTGACA ATTCCCGCCCAAATTTACAAAACCTGGTTGCAACACTTGTTTAAGTTTAT TGACCCATATTCATATttgaagtttatcgtggcttgaatcacgagattta cgtttggctacgtttcaagagtttcttctcccatcatcgggcaaaGCGAG GATGTCTTTCCCGGCTAACTCTGTTTTCTCTCGCTCTACCGGTtggttta agggctctgaccatagtccaaaaattgattttggtatttgaacataaaag ttatatttcaggttccttaacacttttaacaaagaattgcctttataaaN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttacaaaaagtgct tagttttaatgggtaattaacttttttgtttcaaaatttctttacactgt ccgcaaagaattgaactattttaaattttgcggaaaatttttctaaaaag atgtgtcaaaagttatgaccgtttttttaagcaaaatccagatgaaaaat tgatgaaaaaccactattttgaagatttcgagacaaagaagcatttacaa aaattttccgcaaaaattaaaatagttcaattgttcggtaaaagatacaa cttgtactgcgaaaaattttttaaaatgttcttttcttcgccgaaactaa gctcttcaaagttgaaatactcttcctcgcaaaagtcttcattttcttct ttatcaaattttttcaatgcaatttttgaattttcagattcaggaatagt ttgccTAACAggaaatgtataacatgccatagttttgttagttacatcag tcagaaaacacattttaaacacggcaattatgaaaaattcactatggtca gagcccttaagtagtTCATCATACGTTCATAAACAAACTACACAATGGTG CTTAACCGAAACTTTTAATAGCTTTGACTACTGTATATATTAGATAATGG TTGGTAAACTTGACTTGACACAAACCCCTCTAATGCGCTGATTGGTGATC ATTTTTTCGAGGTCCTCACATCCGATTCTGACCTTAGTTTTAATTTATTA TAGATCCAACATTCTTTCCGGGCCGTTCTGCGGATATTTTGTTCAACGGA AAAGTCATCGGACAAATGGGAGTTGTTCACCCGGAAGTACTCGGAAAATT CGAGATCACAAACCCATGTGCTGCTCTAGAAATTAATTTAGAAGTTTTTC TATAGACAAATAtctatttttataattttagttCTGTCTATTGCATTTTT ACGCGAATTATTTTATTAACTCTATGAATGAATGAACGGACAGATGACAT ATAAGTGAACGGtatttatttatcaaaataaacaacGAACGGAGACCTGG TTTTCCTCTTCTCACTTCATTTTTGAAAGAATCTTAAGGTCTTAAGGGTA tgcttttaaaagaaattgggTGATTCTACttcatatccatacaggggCGT GAACGAACATTTTCAGGTTGTAATCGGaaaagaagaatttccaggggtaa ATGACTGATTTTAATTCGTCCATCCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003923XLOC_003923Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007008-exon-sc0000073-1491911889:85751..85884TCONS_00007008-exon-sc0000073-1491911889:85751..85884Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:85751..85884TCONS_00007008-exon-sc0000073-1510915933:85751..85884Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:85751..85884TCONS_00007008-exon-sc0000073-1575043694:85751..85884Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:86340..86395TCONS_00007008-exon-sc0000073-1491911889:86340..86395Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:86340..86395TCONS_00007008-exon-sc0000073-1510915933:86340..86395Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:86340..86395TCONS_00007008-exon-sc0000073-1575043694:86340..86395Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:87081..87178TCONS_00007008-exon-sc0000073-1491911889:87081..87178Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:87081..87178TCONS_00007008-exon-sc0000073-1510915933:87081..87178Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:87081..87178TCONS_00007008-exon-sc0000073-1575043694:87081..87178Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:87304..87360TCONS_00007008-exon-sc0000073-1491911889:87304..87360Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:87304..87360TCONS_00007008-exon-sc0000073-1510915933:87304..87360Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:87304..87360TCONS_00007008-exon-sc0000073-1575043694:87304..87360Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:87585..87651TCONS_00007008-exon-sc0000073-1491911889:87585..87651Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:87585..87651TCONS_00007008-exon-sc0000073-1510915933:87585..87651Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:87585..87651TCONS_00007008-exon-sc0000073-1575043694:87585..87651Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:88141..88200TCONS_00007008-exon-sc0000073-1491911889:88141..88200Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:88141..88200TCONS_00007008-exon-sc0000073-1510915933:88141..88200Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:88141..88200TCONS_00007008-exon-sc0000073-1575043694:88141..88200Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:88724..88930TCONS_00007008-exon-sc0000073-1491911889:88724..88930Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:88724..88930TCONS_00007008-exon-sc0000073-1510915933:88724..88930Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:88724..88930TCONS_00007008-exon-sc0000073-1575043694:88724..88930Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:89349..89457TCONS_00007008-exon-sc0000073-1491911889:89349..89457Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:89349..89457TCONS_00007008-exon-sc0000073-1510915933:89349..89457Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:89349..89457TCONS_00007008-exon-sc0000073-1575043694:89349..89457Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:89884..89954TCONS_00007008-exon-sc0000073-1491911889:89884..89954Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:89884..89954TCONS_00007008-exon-sc0000073-1510915933:89884..89954Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:89884..89954TCONS_00007008-exon-sc0000073-1575043694:89884..89954Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:90266..90327TCONS_00007008-exon-sc0000073-1491911889:90266..90327Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:90266..90327TCONS_00007008-exon-sc0000073-1510915933:90266..90327Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:90266..90327TCONS_00007008-exon-sc0000073-1575043694:90266..90327Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:90687..90738TCONS_00007008-exon-sc0000073-1491911889:90687..90738Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:90687..90738TCONS_00007008-exon-sc0000073-1510915933:90687..90738Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:90687..90738TCONS_00007008-exon-sc0000073-1575043694:90687..90738Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:90917..90978TCONS_00007008-exon-sc0000073-1491911889:90917..90978Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:90917..90978TCONS_00007008-exon-sc0000073-1510915933:90917..90978Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:90917..90978TCONS_00007008-exon-sc0000073-1575043694:90917..90978Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:91304..91407TCONS_00007008-exon-sc0000073-1491911889:91304..91407Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:91304..91407TCONS_00007008-exon-sc0000073-1510915933:91304..91407Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:91304..91407TCONS_00007008-exon-sc0000073-1575043694:91304..91407Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:92131..92231TCONS_00007008-exon-sc0000073-1491911889:92131..92231Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:92131..92231TCONS_00007008-exon-sc0000073-1510915933:92131..92231Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:92131..92231TCONS_00007008-exon-sc0000073-1575043694:92131..92231Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:92642..92722TCONS_00007008-exon-sc0000073-1491911889:92642..92722Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:92642..92722TCONS_00007008-exon-sc0000073-1510915933:92642..92722Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:92642..92722TCONS_00007008-exon-sc0000073-1575043694:92642..92722Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:92938..93030TCONS_00007008-exon-sc0000073-1491911889:92938..93030Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:92938..93030TCONS_00007008-exon-sc0000073-1510915933:92938..93030Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:92938..93030TCONS_00007008-exon-sc0000073-1575043694:92938..93030Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:94348..94465TCONS_00007008-exon-sc0000073-1491911889:94348..94465Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:94348..94465TCONS_00007008-exon-sc0000073-1510915933:94348..94465Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:94348..94465TCONS_00007008-exon-sc0000073-1575043694:94348..94465Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:94943..95113TCONS_00007008-exon-sc0000073-1491911889:94943..95113Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:94943..95113TCONS_00007008-exon-sc0000073-1510915933:94943..95113Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:94943..95113TCONS_00007008-exon-sc0000073-1575043694:94943..95113Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1491911889:96554..97028TCONS_00007008-exon-sc0000073-1491911889:96554..97028Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1510915933:96554..97028TCONS_00007008-exon-sc0000073-1510915933:96554..97028Clytia hemisphaericaexon
TCONS_00007008-exon-sc0000073-1575043694:96554..97028TCONS_00007008-exon-sc0000073-1575043694:96554..97028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:85751..97028 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.4057 32.2771 8.78266 6.04766 27.3601 22.4652 49.5272 52.5909 40.1453 47.5918 34.7115 28.596 32.0374 30.9813 36.3979 40.389 44.616 40.33 13.0916 17.9685 26.4625 25.3518 40.9673 36.9259 31.1072 34.5304 20.4075 15.1744 30.2381 30.1762
Blast
BLAST of TCONS_00007008 vs. Swiss-Prot (Human)
Match: SYFB (Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3)

HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 372/594 (62.63%), Postives = 476/594 (80.13%), Query Frame = 2
Query:   77 MPTVGIKRDLLFQALGREYTVEEFEELCFDYGLELDEVTSEKTMISKEKGEGKASEASEEIIYKIDVPANRYDLLCLEGLTRSLLVFQEKMKIPHFKTILPTNP-QKLIIDKPTAEVRQYAVAAVLRNITFTQDSYNSFIDLQDKLHHNICRRRTLVSMGTHDLDTIQGPFTYTAKPPSEIIFKALNQTKEMTAVELMQHYKTDSHLKNFLHIIEDKPVYPVIYDANGIVLSMPPIINGDHSKITLNTKNVFIEITATDLHKAKVVLDILTTAFSCYCADKFSVEICDVISADGTTNQTPELAYREEVIYPEYACKTIGARLKGDKMAKLLTKMFLKSEVLKDG-RLRCIVPPCRADVIHACDIYEDIAIAYGYNNIEERIPRTSTIAHQLPINKLSDLIRMEIAFAGFTEALTFSLCSREDVAEKLNRPDGTKNAVHISNPKTAEFQIARTTLLPGLLKTIANNKNMPLPLKLFELSDVVLIDDQKDVGARNERRLCAVNCSKTPGFEVIHGLLDRLMTVLNKTPTADKVKNPNEGYRISKGQDPTFFPGRSADILFNGKVIGQMGVVHPEVLGKFEITNPCAALEINLEVFL 1852
            MPTV +KRDLLFQALGR YT EEF+ELCF++GLELDE+TSEK +ISKE+G  KA+ AS+ ++YKIDVPANRYDLLCLEGL R L VF+E++K P +K ++P    QKLII + TA++R +AVAAVLRNI FT+D Y+SFI+LQ+KLH NICR+R LV++GTHDLDT+ GPFTYTAK PS+I FK LN+TKE TA ELM  YKTD+HLK++LHIIE+KP+YPVIYD+NG+VLSMPPIINGDHS+IT+NT+N+FIE T TD  KAK+VLDI+ T FS YC ++F+VE  +V+  +G ++  PELAYR+E++  +   K +G R   + +AKLLT+M+LKSEV+ DG ++   +PP RAD+IHACDI ED AIAYGYNNI+  +P+T TIA+Q P+NKL++L+R ++A AGFTEALTF+LCS+ED+A+KL        AVHISNPKTAEFQ+ARTTLLPGLLKTIA N+ MPLPLKLFE+SD+V+ D   DVGA+N R LCAV  +K PGFE+IHGLLDR+M +L+  P  DK      GY I   + P FFPGR A+I   G+ +G++GV+HP+V+ KFE+T PC++LEIN+  FL
Sbjct:    1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDK-----GGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 589          
The following BLAST results are available for this feature:
BLAST of TCONS_00007008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYFB0.000e+062.63Phenylalanine--tRNA ligase beta subunit OS=Homo sa... [more]
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