TCONS_00006996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006996
Unique NameTCONS_00006996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006996 ID=TCONS_00006996|Name=TCONS_00006996|organism=Clytia hemisphaerica|type=transcript|length=837bp
CATAATTTGACTTGCCACCCTACCATTTGCTCACACGGCATTTATACAAA
CCCCCTCCCTCCCGCGCCGtgtgataataataataataacatatatttta
agtggcatgctccgaaaaaattttaagcttttaggCAGCTGATGAACTGT
TTCTACAAAGAGCCACTATGAACAGAACAAGAACTGGGAAAATCGAACAA
AACAGGAAGACTTAAATTTAATTATCTAACGAAAAAAAATGAGTGAGCGC
AAATTTTGAGAGATTATTTTATtgattctgctttgtcagcataagaaGCG
CGCCATTGTATCCTTAAAGCAAGCATCAGTAACATTACgttgaaatatag
aaaattattattaacaaatcaatttttttctgacaaTAATTCTAATTTTT
GATagttttgttcatttttcatactttaatttattttttagaaatatttg
taGAGGAATTTTAGATAATTTTAGTTAGATTCAATTTATATGGAGAAGAT
TTCTAGGCACAATAGTATTATTTAAAGATATAAGAATATACATAAGGGAG
tagatatttttacaaaatttttcctCGGAGAAAAGTTTATGGTAATTTTA
TGGTTCGCCAATTTTTTAATGATGCCGTGTATCCGCTGACTTTTATATAC
CTAGAgccaagctatatccaccatctttgatcggagtttttggAAAAGTA
GTAGAAAGACTAACGGTAGCACTACGCGATGTTGGTCGATTTAAAGTTCA
ATGAAATTTTCCGTTTAAATTTTTTACACTCAtgttgagtagtgctacca
ttagggtaccactttctcCTTGACCGGGATCGAGAGA
Run BLAST on NCBI

transcript from alignment at sc0000072:426538..427374

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006996 ID=TCONS_00006996|Name=TCONS_00006996|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at sc0000072:426538..427374 (Clytia hemisphaerica)
TCTCTCGATCCCGGTCAAGgagaaagtggtaccctaatggtagcactact
caacaTGAGTGTAAAAAATTTAAACGGAAAATTTCATTGAACTTTAAATC
GACCAACATCGCGTAGTGCTACCGTTAGTCTTTCTACTACTTTTccaaaa
actccgatcaaagatggtggatatagcttggcTCTAGGTATATAAAAGTC
AGCGGATACACGGCATCATTAAAAAATTGGCGAACCATAAAATTACCATA
AACTTTTCTCCGaggaaaaattttgtaaaaatatctaCTCCCTTATGTAT
ATTCTTATATCTTTAAATAATACTATTGTGCCTAGAAATCTTCTCCATAT
AAATTGAATCTAACTAAAATTATCTAAAATTCCTCtacaaatatttctaa
aaaataaattaaagtatgaaaaatgaacaaaactATCAAAAATTAGAATT
AttgtcagaaaaaaattgatttgttaataataattttctatatttcaacG
TAATGTTACTGATGCTTGCTTTAAGGATACAATGGCGCGCttcttatgct
gacaaagcagaatcaATAAAATAATCTCTCAAAATTTGCGCTCACTCATT
TTTTTTCGTTAGATAATTAAATTTAAGTCTTCCTGTTTTGTTCGATTTTC
CCAGTTCTTGTTCTGTTCATAGTGGCTCTTTGTAGAAACAGTTCATCAGC
TGcctaaaagcttaaaattttttcggagcatgccacttaaaatatatgtt
attattattattatcacaCGGCGCGGGAGGGAGGGGGTTTGTATAAATGC
CGTGTGAGCAAATGGTAGGGTGGCAAGTCAAATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003916XLOC_003916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006996-exon-sc0000072-1491911889:426538..427374TCONS_00006996-exon-sc0000072-1491911889:426538..427374Clytia hemisphaericaexon
TCONS_00006996-exon-sc0000072-1510915933:426538..427374TCONS_00006996-exon-sc0000072-1510915933:426538..427374Clytia hemisphaericaexon
TCONS_00006996-exon-sc0000072-1575043694:426538..427374TCONS_00006996-exon-sc0000072-1575043694:426538..427374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:426538..427374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.621425	0.440718	0.319823	0.375476	1.14276	0.66222	1.74314	1.42792	0.761692	1.00245	1.65982	0.489114	0.826581	0.897431	1.37938	1.68684	1.10264	1.17364	0.180161	0.942626	1.36552	1.5186	2.13754	1.82556	1.51636	2.81489	3.33093	3.38951	3.07245	2.29984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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