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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006995 ID=TCONS_00006995|Name=TCONS_00006995|organism=Clytia hemisphaerica|type=transcript|length=1669bp
GGTAagtaatataaaaaaagaacaaataaaaataaaatccgGGAAAAAGA
CAATGGTTGTTCGAAGATTTTGTGATCTAAATGTTCAAGAATCGTCTAGT
TATGTTGACAACTTGGAGAATATCAAACAGCTGGTTTCCCTTGGTTACAC
TGTTGTTGCTTTGAACCGCCATTATGGATTGCCTAAGAAAGAGAAGGAGA
AGAATAAGCGAAGCCCAAATGAGATCAGTACGGCTGAAGAGGCTAAAAAG
TTTGTCGCTCAGGCTAAACAGTTGCACGATAGGCTGAAAGCTGATATAGA
AAAACTGCGTTCGAACCAAGTTGgtcaatcaaaatcaaacacGGAAAACG
ATTTAGTGATACCGGAGAAATTTCAACTACTCTCTCGTTTGACTTTCGAT
TTGGATCATGTTGACCAGTTGAGTTATTTACGTTCCCATAGCAATAAAAC
TATAATGGCTGCTTTTGACGTCATAGCTGTAAACCCGAAatgtgaaaaat
gtttcagatcCCTTATGGAAGGGAAACTGGATTTCGATATTGTTTCTTTT
ACAATGGCTGATCGATTACCGTTCCGGTTGGATCATCATCAGGTCGGGCT
GGGTACGAGTAAAGGCCTCGTTTTCGAGATAGCATATACTACGGCTATCA
AAAGTCAGTCACTGCGTAAGTATGTGTTCTCCAATTCACAAAATTTGACG
TCCAAAACAAAACACGGGAAAGGGATTATAATCACCAGCGGTGGAGagtc
aaaaatggattttcgCGCTCCACCTGATGTggcaaatttgtcaaatttgt
ttGGTTTGAAAGGTTCTTTTGGTCTTGATGCTGTCAGTAATACAGCCATG
AAAGCGGTTACTCATGCTCTTCTACGCAGAGACACGTTCAAAGGTGCAGT
CAAGGTTGAATATGTTGGTGAAAACACATGTGAAGGagagataaaaaatg
aagaagggtcacccaaaaagaaaatgaaagtatAAATGCAAATCTTCGAT
TCGCTGGACTGTTCAAAATCTGAGGtgttagctctagtttagacggtcgA
CTTTCTGCCATGCTTATTCTAATTGTTATAGCAACAAAAAGTCGGCATAA
AATTAGCAGCTAAagtctttgcttgaaaaagattgaaacaatttattgca
ttgacgtcaaacgAGGGCAACGCATCAAGTCAAAATTTATAATTAGAgaa
ggcagggcagaaagtcgttCCTATAAACTAGAATCGTATCAAAGTCTATA
CCGATGGGCTTCTAAGCTCGTTTACCATTAAGAGCGCATTTCTTGATAAG
CTTAGTTTACTTATTTACATAGCTTTGATTTTGTGGtttctaagaatttt
tatcTTTCTAGATGCTTTATACTAGGAATTCATGTTtcctttttcactaa
aaatgttgttttcgATATTATGACTAGATTTTCTCAATAATATTAATCga
gttaatttctttttaattttttaaaatccGATACCATATATTAgggcaac
gatgtaaaaataatagataaccaacttgccttgattctcaaaaaacatcc
gtgttacggttgtagaaatattaatgacattttgcatcgtaaaaagtgca
attaaataaaaacttgcttcatttgcaaccttctattggacagaatcgat
cacgtgatgtatatttttc Run BLAST on NCBI protein sequence of TCONS_00006995-protein >TCONS_00006995-protein ID=TCONS_00006995-protein|Name=TCONS_00006995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
VSNIKKEQIKIKSGKKTMVVRRFCDLNVQESSSYVDNLENIKQLVSLGYT
VVALNRHYGLPKKEKEKNKRSPNEISTAEEAKKFVAQAKQLHDRLKADIE
KLRSNQVGQSKSNTENDLVIPEKFQLLSRLTFDLDHVDQLSYLRSHSNKT
IMAAFDVIAVNPKCEKCFRSLMEGKLDFDIVSFTMADRLPFRLDHHQVGL
GTSKGLVFEIAYTTAIKSQSLRKYVFSNSQNLTSKTKHGKGIIITSGGES
KMDFRAPPDVANLSNLFGLKGSFGLDAVSNTAMKAVTHALLRRDTFKGAV
KVEYVGENTCEGEIKNEEGSPKKKMKV Run BLAST on NCBI transcript from alignment at sc0000072:424568..426236 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006995 ID=TCONS_00006995|Name=TCONS_00006995|organism=Clytia hemisphaerica|type=transcript|length=1669bp|location=Sequence derived from alignment at sc0000072:424568..426236 (Clytia hemisphaerica)
gaaaaatatacatcacgtgatcgattctgtccaatagaaggttgcaaatg
aagcaagtttttatttaattgcactttttacgatgcaaaatgtcattaat
atttctacaaccgtaacacggatgttttttgagaatcaaggcaagttggt
tatctattatttttacatcgttgcccTAATATATGGTATCggattttaaa
aaattaaaaagaaattaactcGATTAATATTATTGAGAAAATCTAGTCAT
AATATcgaaaacaacatttttagtgaaaaaggaAACATGAATTCCTAGTA
TAAAGCATCTAGAAAgataaaaattcttagaaaCCACAAAATCAAAGCTA
TGTAAATAAGTAAACTAAGCTTATCAAGAAATGCGCTCTTAATGGTAAAC
GAGCTTAGAAGCCCATCGGTATAGACTTTGATACGATTCTAGTTTATAGG
aacgactttctgccctgccttcTCTAATTATAAATTTTGACTTGATGCGT
TGCCCTcgtttgacgtcaatgcaataaattgtttcaatctttttcaagca
aagactTTAGCTGCTAATTTTATGCCGACTTTTTGTTGCTATAACAATTA
GAATAAGCATGGCAGAAAGTcgaccgtctaaactagagctaacaCCTCAG
ATTTTGAACAGTCCAGCGAATCGAAGATTTGCATTTatactttcattttc
tttttgggtgacccttcttcattttttatctctCCTTCACATGTGTTTTC
ACCAACATATTCAACCTTGACTGCACCTTTGAACGTGTCTCTGCGTAGAA
GAGCATGAGTAACCGCTTTCATGGCTGTATTACTGACAGCATCAAGACCA
AAAGAACCTTTCAAACCaaacaaatttgacaaatttgccACATCAGGTGG
AGCGcgaaaatccatttttgactCTCCACCGCTGGTGATTATAATCCCTT
TCCCGTGTTTTGTTTTGGACGTCAAATTTTGTGAATTGGAGAACACATAC
TTACGCAGTGACTGACTTTTGATAGCCGTAGTATATGCTATCTCGAAAAC
GAGGCCTTTACTCGTACCCAGCCCGACCTGATGATGATCCAACCGGAACG
GTAATCGATCAGCCATTGTAAAAGAAACAATATCGAAATCCAGTTTCCCT
TCCATAAGGgatctgaaacatttttcacatTTCGGGTTTACAGCTATGAC
GTCAAAAGCAGCCATTATAGTTTTATTGCTATGGGAACGTAAATAACTCA
ACTGGTCAACATGATCCAAATCGAAAGTCAAACGAGAGAGTAGTTGAAAT
TTCTCCGGTATCACTAAATCGTTTTCCgtgtttgattttgattgacCAAC
TTGGTTCGAACGCAGTTTTTCTATATCAGCTTTCAGCCTATCGTGCAACT
GTTTAGCCTGAGCGACAAACTTTTTAGCCTCTTCAGCCGTACTGATCTCA
TTTGGGCTTCGCTTATTCTTCTCCTTCTCTTTCTTAGGCAATCCATAATG
GCGGTTCAAAGCAACAACAGTGTAACCAAGGGAAACCAGCTGTTTGATAT
TCTCCAAGTTGTCAACATAACTAGACGATTCTTGAACATTTAGATCACAA
AATCTTCGAACAACCATTGTCTTTTTCCcggattttatttttatttgttc
tttttttatattactTACC Coding sequence (CDS) from alignment at sc0000072:424568..426236 >TCONS_00006995 ID=TCONS_00006995|Name=TCONS_00006995|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0000072:424568..426236 (Clytia hemisphaerica)
TTatactttcattttctttttgggtgacccttcttcattttttatctctC
CTTCACATGTGTTTTCACCAACATATTCAACCTTGACTGCACCTTTGAAC
GTGTCTCTGCGTAGAAGAGCATGAGTAACCGCTTTCATGGCTGTATTACT
GACAGCATCAAGACCAAAAGAACCTTTCAAACCaaacaaatttgacaaat
ttgccACATCAGGTGGAGCGcgaaaatccatttttgactCTCCACCGCTG
GTGATTATAATCCCTTTCCCGTGTTTTGTTTTGGACGTCAAATTTTGTGA
ATTGGAGAACACATACTTACGCAGTGACTGACTTTTGATAGCCGTAGTAT
ATGCTATCTCGAAAACGAGGCCTTTACTCGTACCCAGCCCGACCTGATGA
TGATCCAACCGGAACGGTAATCGATCAGCCATTGTAAAAGAAACAATATC
GAAATCCAGTTTCCCTTCCATAAGGgatctgaaacatttttcacatTTCG
GGTTTACAGCTATGACGTCAAAAGCAGCCATTATAGTTTTATTGCTATGG
GAACGTAAATAACTCAACTGGTCAACATGATCCAAATCGAAAGTCAAACG
AGAGAGTAGTTGAAATTTCTCCGGTATCACTAAATCGTTTTCCgtgtttg
attttgattgacCAACTTGGTTCGAACGCAGTTTTTCTATATCAGCTTTC
AGCCTATCGTGCAACTGTTTAGCCTGAGCGACAAACTTTTTAGCCTCTTC
AGCCGTACTGATCTCATTTGGGCTTCGCTTATTCTTCTCCTTCTCTTTCT
TAGGCAATCCATAATGGCGGTTCAAAGCAACAACAGTGTAACCAAGGGAA
ACCAGCTGTTTGATATTCTCCAAGTTGTCAACATAACTAGACGATTCTTG
AACATTTAGATCACAAAATCTTCGAACAACCATTGTCTTTTTCCcggatt
ttatttttatttgttctttttttatattactTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006995-exon-sc0000072-1491911889:424568..426236 | TCONS_00006995-exon-sc0000072-1491911889:424568..426236 | Clytia hemisphaerica | exon |
| TCONS_00006995-exon-sc0000072-1510915933:424568..426236 | TCONS_00006995-exon-sc0000072-1510915933:424568..426236 | Clytia hemisphaerica | exon |
| TCONS_00006995-exon-sc0000072-1575043694:424568..426236 | TCONS_00006995-exon-sc0000072-1575043694:424568..426236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:424568..426236 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002738 | RNase_P_p30 |
| IPR016195 | Pol/histidinol_Pase-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004540 | ribonuclease activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008033 | tRNA processing |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008033 |
tRNA processing |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004540 |
ribonuclease activity |
Blast
BLAST of TCONS_00006995 vs. Swiss-Prot (Human)
Match: RPP30 (Ribonuclease P protein subunit p30 OS=Homo sapiens GN=RPP30 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 8.451e-29 Identity = 86/278 (30.94%), Postives = 132/278 (47.48%), Query Frame = 2
Query: 68 FCDLNVQESSSYVDNLENIKQLVS----LGYTVVALNRHYGLPKKEKEKNKRSPNEISTAEEAKKFVAQAKQLHDRLKADIEKLRSNQVGQSKSNTENDLVIPEKFQLLSRLTFDLDHVDQLSYLRSHSNKTIMAAFDVIAVNPKCEKCFRSLMEGKLDFDIVSFTMADRLPFRLDHHQVGLGTSKGLVFEIAYTTAIKSQSLRKYVFSNSQNLTSKTKHGKGIIITSGGESKMDFRAPPDVANLSNLFGLKGSFGLDAVSNTAMKAVTHALLRRDTF 889
F DL+++ S +L+ ++ LV LGY+VVA+N KEK++ P +S E + + Q KS ++L+RLT + + LR+ S++ + +DV+AV PK EK F + LD D+V T+ ++LPF + + +GL FE+ Y+ AIK ++R+Y S++ NL K GK +II+S E ++ R P DVANL LFGL S AVS A+ H R+ F
Sbjct: 4 FADLDLRAGS----DLKALRGLVETAAHLGYSVVAINHIVDF--KEKKQEIEKPVAVS-----------------------ELFTTLPIVQGKSR---------PIKILTRLTIIVSDPSHCNVLRATSSRARL--YDVVAVFPKTEKLFH-IACTHLDVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICK-GKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAF 239
The following BLAST results are available for this feature:
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